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1.5.0-DEV-6a9a92683d.log
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Julia Version 1.5.0-DEV.299
Commit 6a9a92683d (2020-02-20 07:47 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed MKL_jll ───────────────────── v2019.0.117+2
Installed Compat ────────────────────── v3.5.0
Installed Contour ───────────────────── v0.5.1
Installed MicrobiomePlots ───────────── v0.1.0
Installed ColorTypes ────────────────── v0.9.1
Installed ForwardDiff ───────────────── v0.10.9
Installed Observables ───────────────── v0.2.3
Installed BinaryProvider ────────────── v0.5.8
Installed Measures ──────────────────── v0.3.1
Installed WoodburyMatrices ──────────── v0.5.0
Installed PlotThemes ────────────────── v1.0.1
Installed OrderedCollections ────────── v1.1.0
Installed StatsFuns ─────────────────── v0.9.4
Installed Microbiome ────────────────── v0.4.0
Installed Clustering ────────────────── v0.13.3
Installed JSON ──────────────────────── v0.21.0
Installed Interpolations ────────────── v0.12.5
Installed AbstractFFTs ──────────────── v0.5.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed OffsetArrays ──────────────── v1.0.2
Installed Tables ────────────────────── v1.0.1
Installed StatsBase ─────────────────── v0.32.1
Installed LineSearches ──────────────── v7.0.1
Installed GeometryTypes ─────────────── v0.7.7
Installed StatPlots ─────────────────── v0.9.2
Installed PooledArrays ──────────────── v0.5.3
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed Ratios ────────────────────── v0.4.0
Installed Arpack ────────────────────── v0.4.0
Installed NLSolversBase ─────────────── v7.6.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed RecipesBase ───────────────── v0.7.0
Installed TableTraits ───────────────── v1.0.0
Installed PDMats ────────────────────── v0.9.11
Installed NearestNeighbors ──────────── v0.4.4
Installed Distributions ─────────────── v0.22.4
Installed DiffRules ─────────────────── v1.0.1
Installed DataValueInterfaces ───────── v1.0.0
Installed KernelDensity ─────────────── v0.5.1
Installed AxisAlgorithms ────────────── v1.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed OpenBLAS_jll ──────────────── v0.3.7+5
Installed FFMPEG ────────────────────── v0.2.4
Installed Parameters ────────────────── v0.12.0
Installed QuadGK ────────────────────── v2.3.1
Installed GR ────────────────────────── v0.46.0
Installed Colors ────────────────────── v0.11.2
Installed Showoff ───────────────────── v0.3.1
Installed Arpack_jll ────────────────── v3.5.0+2
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed Widgets ───────────────────── v0.6.2
Installed Plots ─────────────────────── v0.27.1
Installed EcoBase ───────────────────── v0.1.1
Installed CategoricalArrays ─────────── v0.7.7
Installed RandomBooleanMatrices ─────── v0.1.1
Installed SpatialEcology ────────────── v0.9.0
Installed IterableTables ────────────── v1.0.0
Installed DataValues ────────────────── v0.4.13
Installed ArrayInterface ────────────── v2.4.1
Installed DataFramesMeta ────────────── v0.5.0
Installed Reexport ──────────────────── v0.2.0
Installed FixedPointNumbers ─────────── v0.7.1
Installed PlotUtils ─────────────────── v0.6.3
Installed DiffResults ───────────────── v1.0.2
Installed TableTraitsUtils ──────────── v1.0.1
Installed StaticArrays ──────────────── v0.12.1
Installed Optim ─────────────────────── v0.20.1
Installed Missings ──────────────────── v0.4.3
Installed Parsers ───────────────────── v0.3.11
Installed FFTW ──────────────────────── v1.2.0
Installed InvertedIndices ───────────── v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed Distances ─────────────────── v0.8.2
Installed Rmath ─────────────────────── v0.6.0
Installed SpecialFunctions ──────────── v0.10.0
Installed DataStructures ────────────── v0.17.9
Installed DataFrames ────────────────── v0.20.2
Installed FiniteDiff ────────────────── v2.2.1
Installed PositiveFactorizations ────── v0.2.3
Installed FillArrays ────────────────── v0.8.4
Installed RandomNumbers ─────────────── v1.4.0
Installed Requires ──────────────────── v1.0.1
Installed CommonSubexpressions ──────── v0.2.0
#=#=# ######################################################################## 100.0%
0.7%######################################################################## 100.0%
#=#=# ########## 14.5%################################## 48.1%############################################################### 88.2%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
##### 7.0%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[bed85cf4] + MicrobiomePlots v0.1.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.4.1
[13072b0f] + AxisAlgorithms v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[324d7699] + CategoricalArrays v0.7.7
[aaaa29a8] + Clustering v0.13.3
[3da002f7] + ColorTypes v0.9.1
[5ae59095] + Colors v0.11.2
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v3.5.0
[d38c429a] + Contour v0.5.1
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.2
[1313f7d8] + DataFramesMeta v0.5.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[e7dc6d0d] + DataValues v0.4.13
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.22.4
[a58aae7d] + EcoBase v0.1.1
[c87230d0] + FFMPEG v0.2.4
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[1a297f60] + FillArrays v0.8.4
[6a86dc24] + FiniteDiff v2.2.1
[53c48c17] + FixedPointNumbers v0.7.1
[f6369f11] + ForwardDiff v0.10.9
[28b8d3ca] + GR v0.46.0
[4d00f742] + GeometryTypes v0.7.7
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.5
[41ab1584] + InvertedIndices v1.0.0
[1c8ee90f] + IterableTables v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[d3d80556] + LineSearches v7.0.1
[856f044c] + MKL_jll v2019.0.117+2
[442fdcdd] + Measures v0.3.1
[3bd8f0ae] + Microbiome v0.4.0
[bed85cf4] + MicrobiomePlots v0.1.0
[e1d29d7a] + Missings v0.4.3
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[510215fc] + Observables v0.2.3
[6fe1bfb0] + OffsetArrays v1.0.2
[4536629a] + OpenBLAS_jll v0.3.7+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.20.1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.11
[ccf2f8ad] + PlotThemes v1.0.1
[995b91a9] + PlotUtils v0.6.3
[91a5bcdd] + Plots v0.27.1
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[1fd47b50] + QuadGK v2.3.1
[9ae346a0] + RandomBooleanMatrices v0.1.1
[e6cf234a] + RandomNumbers v1.4.0
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.0
[992d4aef] + Showoff v0.3.1
[a2af1166] + SortingAlgorithms v0.3.1
[348f2d5d] + SpatialEcology v0.9.0
[276daf66] + SpecialFunctions v0.10.0
[60ddc479] + StatPlots v0.9.2
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.1
[4c63d2b9] + StatsFuns v0.9.4
[3783bdb8] + TableTraits v1.0.0
[382cd787] + TableTraitsUtils v1.0.1
[bd369af6] + Tables v1.0.1
[cc8bc4a8] + Widgets v0.6.2
[efce3f68] + WoodburyMatrices v0.5.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building GR ────→ `~/.julia/packages/GR/NSt7D/deps/build.log`
Building FFMPEG → `~/.julia/packages/FFMPEG/guN1x/deps/build.log`
Building Plots ─→ `~/.julia/packages/Plots/WwFyB/deps/build.log`
Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Building Rmath ─→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Testing MicrobiomePlots
Status `/tmp/jl_fZNsGO/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[4fba245c] ArrayInterface v2.4.1
[13072b0f] AxisAlgorithms v1.0.0
[b99e7846] BinaryProvider v0.5.8
[324d7699] CategoricalArrays v0.7.7
[aaaa29a8] Clustering v0.13.3
[3da002f7] ColorTypes v0.9.1
[5ae59095] Colors v0.11.2
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v3.5.0
[d38c429a] Contour v0.5.1
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.20.2
[1313f7d8] DataFramesMeta v0.5.0
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[e7dc6d0d] DataValues v0.4.13
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.22.4
[a58aae7d] EcoBase v0.1.1
[c87230d0] FFMPEG v0.2.4
[7a1cc6ca] FFTW v1.2.0
[f5851436] FFTW_jll v3.3.9+3
[1a297f60] FillArrays v0.8.4
[6a86dc24] FiniteDiff v2.2.1
[53c48c17] FixedPointNumbers v0.7.1
[f6369f11] ForwardDiff v0.10.9
[28b8d3ca] GR v0.46.0
[4d00f742] GeometryTypes v0.7.7
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.5
[41ab1584] InvertedIndices v1.0.0
[1c8ee90f] IterableTables v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[d3d80556] LineSearches v7.0.1
[856f044c] MKL_jll v2019.0.117+2
[442fdcdd] Measures v0.3.1
[3bd8f0ae] Microbiome v0.4.0
[bed85cf4] MicrobiomePlots v0.1.0
[e1d29d7a] Missings v0.4.3
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[510215fc] Observables v0.2.3
[6fe1bfb0] OffsetArrays v1.0.2
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[429524aa] Optim v0.20.1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.11
[ccf2f8ad] PlotThemes v1.0.1
[995b91a9] PlotUtils v0.6.3
[91a5bcdd] Plots v0.27.1
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[1fd47b50] QuadGK v2.3.1
[9ae346a0] RandomBooleanMatrices v0.1.1
[e6cf234a] RandomNumbers v1.4.0
[c84ed2f1] Ratios v0.4.0
[3cdcf5f2] RecipesBase v0.7.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.0
[992d4aef] Showoff v0.3.1
[a2af1166] SortingAlgorithms v0.3.1
[348f2d5d] SpatialEcology v0.9.0
[276daf66] SpecialFunctions v0.10.0
[60ddc479] StatPlots v0.9.2
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.1
[4c63d2b9] StatsFuns v0.9.4
[3783bdb8] TableTraits v1.0.0
[382cd787] TableTraitsUtils v1.0.1
[bd369af6] Tables v1.0.1
[cc8bc4a8] Widgets v0.6.2
[efce3f68] WoodburyMatrices v0.5.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ERROR: LoadError: LoadError: UndefVarError: specnames not defined
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/Microbiome/fYAI9/src/ecotranslations.jl:6
[2] include(::Function, ::Module, ::String) at ./Base.jl:380
[3] include at ./Base.jl:368 [inlined]
[4] include(::String) at /home/pkgeval/.julia/packages/Microbiome/fYAI9/src/Microbiome.jl:1
[5] top-level scope at /home/pkgeval/.julia/packages/Microbiome/fYAI9/src/Microbiome.jl:54
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:451
[11] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Microbiome/fYAI9/src/ecotranslations.jl:6
in expression starting at /home/pkgeval/.julia/packages/Microbiome/fYAI9/src/Microbiome.jl:54
ERROR: LoadError: Failed to precompile Microbiome [3bd8f0ae-a0f2-5238-a5af-e1b399a4940c] to /home/pkgeval/.julia/compiled/v1.5/Microbiome/YtfOZ_J1VxY.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:441
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/MicrobiomePlots/rHle4/test/runtests.jl:1
ERROR: Package MicrobiomePlots errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13