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1.5.0-DEV-6a9a92683d.log
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1.5.0-DEV-6a9a92683d.log
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Julia Version 1.5.0-DEV.299
Commit 6a9a92683d (2020-02-20 07:47 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IniFile ────────────── v0.5.0
Installed Combinatorics ──────── v1.0.0
Installed CodecZlib ──────────── v0.6.0
Installed OrderedCollections ─── v1.1.0
Installed BinaryProvider ─────── v0.5.8
Installed Clustering ─────────── v0.13.3
Installed StatsBase ──────────── v0.32.1
Installed ProgressMeter ──────── v1.2.0
Installed SortingAlgorithms ──── v0.3.1
Installed RecipesBase ────────── v0.8.0
Installed TranscodingStreams ─── v0.9.5
Installed NamedArrays ────────── v0.9.3
Installed PairwiseListMatrices ─ v0.7.0
Installed NearestNeighbors ───── v0.4.4
Installed GZip ───────────────── v0.5.1
Installed Polynomials ────────── v0.5.3
Installed HTTP ───────────────── v0.8.8
Installed FastaIO ────────────── v1.0.0
Installed MIToS ──────────────── v2.4.0
Installed Missings ───────────── v0.4.3
Installed AutoHashEquals ─────── v0.2.0
Installed Formatting ─────────── v0.4.1
Installed StaticArrays ───────── v0.12.1
Installed InvertedIndices ────── v1.0.0
Installed DataAPI ────────────── v1.1.0
Installed Requires ───────────── v1.0.1
Installed LightXML ───────────── v0.8.1
Installed Distances ──────────── v0.8.2
Installed DataStructures ─────── v0.17.9
Installed TextWrap ───────────── v1.0.1
Installed ArgParse ───────────── v1.0.1
Installed MbedTLS ────────────── v0.7.0
Updating `~/.julia/environments/v1.5/Project.toml`
[51bafb47] + MIToS v2.4.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[c7e460c6] + ArgParse v1.0.1
[15f4f7f2] + AutoHashEquals v0.2.0
[b99e7846] + BinaryProvider v0.5.8
[aaaa29a8] + Clustering v0.13.3
[944b1d66] + CodecZlib v0.6.0
[861a8166] + Combinatorics v1.0.0
[9a962f9c] + DataAPI v1.1.0
[864edb3b] + DataStructures v0.17.9
[b4f34e82] + Distances v0.8.2
[a0c94c4b] + FastaIO v1.0.0
[59287772] + Formatting v0.4.1
[92fee26a] + GZip v0.5.1
[cd3eb016] + HTTP v0.8.8
[83e8ac13] + IniFile v0.5.0
[41ab1584] + InvertedIndices v1.0.0
[9c8b4983] + LightXML v0.8.1
[51bafb47] + MIToS v2.4.0
[739be429] + MbedTLS v0.7.0
[e1d29d7a] + Missings v0.4.3
[86f7a689] + NamedArrays v0.9.3
[b8a86587] + NearestNeighbors v0.4.4
[bac558e1] + OrderedCollections v1.1.0
[f9da4da7] + PairwiseListMatrices v0.7.0
[f27b6e38] + Polynomials v0.5.3
[92933f4c] + ProgressMeter v1.2.0
[3cdcf5f2] + RecipesBase v0.8.0
[ae029012] + Requires v1.0.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[2913bbd2] + StatsBase v0.32.1
[b718987f] + TextWrap v1.0.1
[3bb67fe8] + TranscodingStreams v0.9.5
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building LightXML ─→ `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Testing MIToS
#=#=# ######################################################################## 100.0%
Status `/tmp/jl_EMjWJE/Manifest.toml`
[c7e460c6] ArgParse v1.0.1
[15f4f7f2] AutoHashEquals v0.2.0
[b99e7846] BinaryProvider v0.5.8
[336ed68f] CSV v0.5.24
[324d7699] CategoricalArrays v0.7.7
[aaaa29a8] Clustering v0.13.3
[944b1d66] CodecZlib v0.6.0
[861a8166] Combinatorics v1.0.0
[34da2185] Compat v3.5.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[b4f34e82] Distances v0.8.2
[a0c94c4b] FastaIO v1.0.0
[48062228] FilePathsBase v0.7.0
[59287772] Formatting v0.4.1
[92fee26a] GZip v0.5.1
[cd3eb016] HTTP v0.8.8
[83e8ac13] IniFile v0.5.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[9c8b4983] LightXML v0.8.1
[51bafb47] MIToS v2.4.0
[739be429] MbedTLS v0.7.0
[e1d29d7a] Missings v0.4.3
[86f7a689] NamedArrays v0.9.3
[b8a86587] NearestNeighbors v0.4.4
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[f9da4da7] PairwiseListMatrices v0.7.0
[69de0a69] Parsers v0.3.11
[f27b6e38] Polynomials v0.5.3
[2dfb63ee] PooledArrays v0.5.3
[92933f4c] ProgressMeter v1.2.0
[f535d66d] ROCAnalysis v0.3.1
[3cdcf5f2] RecipesBase v0.8.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.10.0
[90137ffa] StaticArrays v0.12.1
[2913bbd2] StatsBase v0.32.1
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.1
[b718987f] TextWrap v1.0.1
[3bb67fe8] TranscodingStreams v0.9.5
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
Test Summary: | Pass Total
Utils | 31 31
Test Summary: | Pass Total
MSA | 25945 25945
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:531
Cloning git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l Fetching: [> ] 0.0 %[2K[?25h Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[2K[?25hInformation: Error During Test at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:46
Got exception outside of a @test
LoadError: could not find project file in package at https://github.com/carlobaldassi/GaussDCA.jl
Stacktrace:
[1] pkgerror(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:629
[3] (::Pkg.Types.var"#54#55"{Pkg.Types.Context,Pkg.Types.PackageSpec})(::LibGit2.GitRepo) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:602
[4] with(::Pkg.Types.var"#54#55"{Pkg.Types.Context,Pkg.Types.PackageSpec}, ::LibGit2.GitRepo) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/LibGit2/src/types.jl:1125
[5] handle_repo_add!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:562
[6] handle_repos_add!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:620
[7] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:139
[8] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:112
[9] #add#27 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:109 [inlined]
[10] add at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:109 [inlined]
[11] #add#23 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:106 [inlined]
[12] add(::Pkg.Types.PackageSpec) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:106
[13] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/Information/Externals.jl:4
[14] include(::String) at ./client.jl:441
[15] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:53
[16] top-level scope at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[17] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:47
[18] include(::String) at ./client.jl:441
[19] top-level scope at none:6
[20] eval(::Module, ::Any) at ./boot.jl:331
[21] exec_options(::Base.JLOptions) at ./client.jl:264
[22] _start() at ./client.jl:490
in expression starting at /home/pkgeval/.julia/packages/MIToS/Hha81/test/Information/Externals.jl:3
Test Summary: | Pass Error Total
Information | 741 1 742
ContingencyTables | 430 430
Counters | 191 191
Information Measures | 49 49
Iterations | 6 6
CorrectedMutualInformation | 55 55
Pairwise Gap Percentage | 10 10
ERROR: LoadError: Some tests did not pass: 741 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:46
ERROR: Package MIToS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13