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1.5.0-DEV-6a9a92683d.log
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Julia Version 1.5.0-DEV.299
Commit 6a9a92683d (2020-02-20 07:47 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Combinatorics ─────────────── v1.0.0
Installed URIParser ─────────────────── v0.4.0
Installed CodecZlib ─────────────────── v0.6.0
Installed Compat ────────────────────── v2.2.0
Installed JLD2 ──────────────────────── v0.1.11
Installed ExoplanetsSysSim ──────────── v1.0.1
Installed BinDeps ───────────────────── v1.0.0
Installed BinaryProvider ────────────── v0.5.8
Installed CMakeWrapper ──────────────── v0.2.3
Installed OrderedCollections ────────── v1.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed StatsFuns ─────────────────── v0.9.4
Installed HypothesisTests ───────────── v0.9.0
Installed Tables ────────────────────── v1.0.1
Installed JSON ──────────────────────── v0.21.0
Installed StatsBase ─────────────────── v0.32.1
Installed PooledArrays ──────────────── v0.5.3
Installed TableTraits ───────────────── v1.0.0
Installed Arpack ────────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed JLD ───────────────────────── v0.9.2
Installed Roots ─────────────────────── v0.8.4
Installed PDMats ────────────────────── v0.9.11
Installed DataValueInterfaces ───────── v1.0.0
Installed RecipesBase ───────────────── v0.8.0
Installed Distributions ─────────────── v0.21.12
Installed Parameters ────────────────── v0.12.0
Installed TranscodingStreams ────────── v0.9.5
Installed OpenBLAS_jll ──────────────── v0.3.7+5
Installed LegacyStrings ─────────────── v0.4.1
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed QuadGK ────────────────────── v2.3.1
Installed Arpack_jll ────────────────── v3.5.0+2
Installed Blosc ─────────────────────── v0.5.1
Installed CategoricalArrays ─────────── v0.7.7
Installed Reexport ──────────────────── v0.2.0
Installed Missings ──────────────────── v0.4.3
Installed Polynomials ───────────────── v0.5.3
Installed CMake ─────────────────────── v1.2.0
Installed SpecialFunctions ──────────── v0.9.0
Installed DataStructures ────────────── v0.17.9
Installed FileIO ────────────────────── v1.2.2
Installed CSV ───────────────────────── v0.5.24
Installed DataFrames ────────────────── v0.20.2
Installed DataAPI ───────────────────── v1.1.0
Installed InvertedIndices ───────────── v1.0.0
Installed FillArrays ────────────────── v0.8.4
Installed Parsers ───────────────────── v0.3.11
Installed Rmath ─────────────────────── v0.6.0
Installed FilePathsBase ─────────────── v0.7.0
Installed HDF5 ──────────────────────── v0.12.5
Installed WeakRefStrings ────────────── v0.6.2
Installed CORBITS ───────────────────── v1.0.1
#=#=# # 2.7%######### 13.4%################## 25.9%############################# 41.6%########################################## 58.8%########################################################### 83.0%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[e0ba718c] + ExoplanetsSysSim v1.0.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[9e28174c] + BinDeps v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[a74b3585] + Blosc v0.5.1
[631607c0] + CMake v1.2.0
[d5fb7624] + CMakeWrapper v0.2.3
[19bfd68b] + CORBITS v1.0.1
[336ed68f] + CSV v0.5.24
[324d7699] + CategoricalArrays v0.7.7
[944b1d66] + CodecZlib v0.6.0
[861a8166] + Combinatorics v1.0.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[31c24e10] + Distributions v0.21.12
[e0ba718c] + ExoplanetsSysSim v1.0.1
[5789e2e9] + FileIO v1.2.2
[48062228] + FilePathsBase v0.7.0
[1a297f60] + FillArrays v0.8.4
[f67ccb44] + HDF5 v0.12.5
[09f84164] + HypothesisTests v0.9.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[4138dd39] + JLD v0.9.2
[033835bb] + JLD2 v0.1.11
[682c06a0] + JSON v0.21.0
[1b4a561d] + LegacyStrings v0.4.1
[e1d29d7a] + Missings v0.4.3
[4536629a] + OpenBLAS_jll v0.3.7+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.11
[f27b6e38] + Polynomials v0.5.3
[2dfb63ee] + PooledArrays v0.5.3
[1fd47b50] + QuadGK v2.3.1
[3cdcf5f2] + RecipesBase v0.8.0
[189a3867] + Reexport v0.2.0
[79098fc4] + Rmath v0.6.0
[f2b01f46] + Roots v0.8.4
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[2913bbd2] + StatsBase v0.32.1
[4c63d2b9] + StatsFuns v0.9.4
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.1
[3bb67fe8] + TranscodingStreams v0.9.5
[30578b45] + URIParser v0.4.0
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ───────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Building CMake ───────────→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc ───────────→ `~/.julia/packages/Blosc/lzFr0/deps/build.log`
Building HDF5 ────────────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building CORBITS ─────────→ `~/.julia/packages/CORBITS/2Gbsd/deps/build.log`
┌ Error: Error building `CORBITS`:
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/math_misc.cpp -o lib/math_misc.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/point3D.cpp -o lib/point3D.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/transit.cpp -o lib/transit.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/occultations.cpp -o lib/occultations.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/c_interface.cpp -o lib/c_interface.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat data/koi_input.cpp -o data/koi_input.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat stat/stat_dist.cpp -o stat/stat_dist.o
│ g++ -shared -olibcorbits.so lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat base/corbits.cpp -o base/corbits.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o base/corbits.o -o base/corbits
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/kepler-11/Kepler-11.cpp -o examples/kepler-11/Kepler-11.o
│ examples/kepler-11/Kepler-11.cpp: In function 'void read_input()':
│ examples/kepler-11/Kepler-11.cpp:27:12: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
│ fscanf (fin, "%d", &n_planets);
│ ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
│ examples/kepler-11/Kepler-11.cpp:32:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
│ fscanf (fin, "%s %d", s, &use[i]);
│ ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/kepler-11/Kepler-11.o -o examples/kepler-11/kepler-11
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/period-dist/period_dist.cpp -o examples/period-dist/period_dist.o
│ examples/period-dist/period_dist.cpp: In function 'void print_results()':
│ examples/period-dist/period_dist.cpp:312:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'std::vector<pdf>::size_type {aka long unsigned int}' [-Wformat=]
│ fprintf (stderr, "Number of pairs of KOIs: %d\n", PDF.size());
│ ~~~~~~~~~~^
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/period-dist/period_dist.o -o examples/period-dist/period-dist
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/mhs-dist/mhs_dist.cpp -o examples/mhs-dist/mhs_dist.o
│ examples/mhs-dist/mhs_dist.cpp: In function 'void print_results()':
│ examples/mhs-dist/mhs_dist.cpp:256:63: warning: format '%d' expects argument of type 'int', but argument 3 has type 'std::vector<pdf>::size_type {aka long unsigned int}' [-Wformat=]
│ fprintf (stderr, "Number of pairs of KOIs: %d\n", PDF.size());
│ ~~~~~~~~~~^
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/mhs-dist/mhs_dist.o -o examples/mhs-dist/mhs-dist
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/solar-system/solsys.cpp -o examples/solar-system/solsys.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/solar-system/solsys.o -o examples/solar-system/solar-system
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/case-trans/case_trans.cpp -o examples/case-trans/case_trans.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/case-trans/case_trans.o -o examples/case-trans/case-trans
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/koi-table/koi_table.cpp -o examples/koi-table/koi_table.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/koi-table/koi_table.o -o examples/koi-table/koi-table
│ data/grab.sh
│ sed: can't read data/koi-data.txt: No such file or directory
│ Makefile:203: recipe for target 'data/koi-data-edit.txt' failed
│ make: *** [data/koi-data-edit.txt] Error 2
│ ERROR: LoadError: failed process: Process(`make`, ProcessExited(2)) [2]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /home/pkgeval/.julia/packages/CORBITS/2Gbsd/deps/build.jl:2
│ [5] include(::String) at ./client.jl:441
│ [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/CORBITS/2Gbsd/deps/build.jl:2
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:892
Building CodecZlib ───────→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building ExoplanetsSysSim → `~/.julia/packages/ExoplanetsSysSim/KrNHq/deps/build.log`
Testing ExoplanetsSysSim
Status `/tmp/jl_iYCELF/Manifest.toml`
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[9e28174c] BinDeps v1.0.0
[b99e7846] BinaryProvider v0.5.8
[a74b3585] Blosc v0.5.1
[631607c0] CMake v1.2.0
[d5fb7624] CMakeWrapper v0.2.3
[19bfd68b] CORBITS v1.0.1
[336ed68f] CSV v0.5.24
[324d7699] CategoricalArrays v0.7.7
[944b1d66] CodecZlib v0.6.0
[861a8166] Combinatorics v1.0.0
[34da2185] Compat v2.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[31c24e10] Distributions v0.21.12
[e0ba718c] ExoplanetsSysSim v1.0.1
[5789e2e9] FileIO v1.2.2
[48062228] FilePathsBase v0.7.0
[1a297f60] FillArrays v0.8.4
[f67ccb44] HDF5 v0.12.5
[09f84164] HypothesisTests v0.9.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[4138dd39] JLD v0.9.2
[033835bb] JLD2 v0.1.11
[682c06a0] JSON v0.21.0
[1b4a561d] LegacyStrings v0.4.1
[e1d29d7a] Missings v0.4.3
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.11
[f27b6e38] Polynomials v0.5.3
[2dfb63ee] PooledArrays v0.5.3
[1fd47b50] QuadGK v2.3.1
[3cdcf5f2] RecipesBase v0.8.0
[189a3867] Reexport v0.2.0
[79098fc4] Rmath v0.6.0
[f2b01f46] Roots v0.8.4
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[2913bbd2] StatsBase v0.32.1
[4c63d2b9] StatsFuns v0.9.4
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.1
[3bb67fe8] TranscodingStreams v0.9.5
[30578b45] URIParser v0.4.0
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[4607b0f0] SuiteSparse
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ERROR: LoadError: ArgumentError: Package Test not found in current path:
- Run `import Pkg; Pkg.add("Test")` to install the Test package.
Stacktrace:
[1] require(::Module, ::Symbol) at ./loading.jl:892
[2] include(::String) at ./client.jl:441
[3] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/ExoplanetsSysSim/KrNHq/test/runtests.jl:1
ERROR: Package ExoplanetsSysSim errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13