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1.5.0-DEV-6a9a92683d.log
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Julia Version 1.5.0-DEV.299
Commit 6a9a92683d (2020-02-20 07:47 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed CrossMappings ─────────────── v0.3.4
Installed IntelOpenMP_jll ───────────── v2018.0.3+0
Installed Compat ────────────────────── v2.2.0
Installed MKL_jll ───────────────────── v2019.0.117+2
Installed IterTools ─────────────────── v1.3.0
Installed DynamicalSystemsBase ──────── v1.5.2
Installed UncertainData ─────────────── v0.10.3
Installed CausalityTools ────────────── v0.9.9
Installed ZygoteRules ───────────────── v0.2.0
Installed Conda ─────────────────────── v1.4.1
Installed PyCall ────────────────────── v1.91.3
Installed BinaryProvider ────────────── v0.5.8
Installed ForwardDiff ───────────────── v0.10.9
Installed DiffEqBase ────────────────── v6.16.0
Installed Combinatorics ─────────────── v0.7.0
Installed WoodburyMatrices ──────────── v0.5.0
Installed FunctionWrappers ──────────── v1.0.0
Installed HypothesisTests ───────────── v0.8.0
Installed DocStringExtensions ───────── v0.8.1
Installed ChaosTools ────────────────── v1.9.0
Installed Wavelets ──────────────────── v0.8.0
Installed StatsFuns ─────────────────── v0.9.4
Installed JSON ──────────────────────── v0.21.0
Installed OrderedCollections ────────── v1.1.0
Installed RecursiveFactorization ────── v0.1.0
Installed AbstractFFTs ──────────────── v0.5.0
Installed Simplices ─────────────────── v0.4.1
Installed OffsetArrays ──────────────── v1.0.2
Installed LineSearches ──────────────── v7.0.1
Installed TimeseriesSurrogates ──────── v0.5.1
Installed StatsBase ─────────────────── v0.32.1
Installed Interpolations ────────────── v0.12.5
Installed PooledArrays ──────────────── v0.5.3
Installed DelayEmbeddings ───────────── v1.3.1
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CRlibm ────────────────────── v0.8.0
Installed Measurements ──────────────── v2.2.0
Installed Tables ────────────────────── v1.0.1
Installed Distributions ─────────────── v0.21.12
Installed StateSpaceReconstruction ──── v0.4.2
Installed FFTW_jll ──────────────────── v3.3.9+3
Installed FastRounding ──────────────── v0.3.1
Installed Ratios ────────────────────── v0.4.0
Installed SortingAlgorithms ─────────── v0.3.1
Installed Arpack ────────────────────── v0.4.0
Installed NLSolversBase ─────────────── v7.6.1
Installed TreeViews ─────────────────── v0.3.0
Installed Roots ─────────────────────── v0.8.4
Installed TableTraits ───────────────── v1.0.0
Installed RecipesBase ───────────────── v0.7.0
Installed NearestNeighbors ──────────── v0.4.4
Installed PDMats ────────────────────── v0.9.11
Installed SetRounding ───────────────── v0.2.0
Installed DiffRules ─────────────────── v1.0.1
Installed DataValueInterfaces ───────── v1.0.0
Installed KernelDensity ─────────────── v0.5.1
Installed InplaceOps ────────────────── v0.3.0
Installed AxisAlgorithms ────────────── v1.0.0
Installed NaNMath ───────────────────── v0.3.3
Installed Unitful ───────────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed QuadGK ────────────────────── v2.3.1
Installed DSP ───────────────────────── v0.6.3
Installed IterativeSolvers ──────────── v0.8.1
Installed StatsModels ───────────────── v0.6.6
Installed SimpleDiffEq ──────────────── v1.1.0
Installed Arpack_jll ────────────────── v3.5.0+2
Installed OpenBLAS_jll ──────────────── v0.3.7+5
Installed OpenSpecFun_jll ───────────── v0.5.3+1
Installed ConstructionBase ──────────── v1.0.0
Installed LaTeXStrings ──────────────── v1.0.3
Installed Bootstrap ─────────────────── v2.2.0
Installed VersionParsing ────────────── v1.2.0
Installed CategoricalArrays ─────────── v0.7.7
Installed ErrorfreeArithmetic ───────── v0.5.0
Installed PerronFrobenius ───────────── v0.6.0
Installed ArrayInterface ────────────── v2.4.1
Installed MuladdMacro ───────────────── v0.2.2
Installed Reexport ──────────────────── v0.2.0
Installed DiffResults ───────────────── v1.0.2
Installed Polynomials ───────────────── v0.6.0
Installed StaticArrays ──────────────── v0.11.1
Installed TransferEntropy ───────────── v0.5.6
Installed Optim ─────────────────────── v0.20.1
Installed Documenter ────────────────── v0.24.5
Installed UnicodePlots ──────────────── v1.2.0
Installed Missings ──────────────────── v0.4.3
Installed FFTW ──────────────────────── v1.2.0
Installed ShiftedArrays ─────────────── v1.0.0
Installed LombScargle ───────────────── v0.5.0
Installed Sass ──────────────────────── v0.1.0
Installed SpecialFunctions ──────────── v0.9.0
Installed InvertedIndices ───────────── v1.0.0
Installed Distances ─────────────────── v0.8.2
Installed Parsers ───────────────────── v0.3.11
Installed FiniteDiff ────────────────── v2.2.1
Installed DataStructures ────────────── v0.17.9
Installed ChainRulesCore ────────────── v0.6.1
Installed RecurrenceAnalysis ────────── v1.1.1
Installed DataFrames ────────────────── v0.20.2
Installed DataAPI ───────────────────── v1.1.0
Installed Rmath ─────────────────────── v0.6.0
Installed DocumenterTools ───────────── v0.1.4
Installed CommonSubexpressions ──────── v0.2.0
Installed Requires ──────────────────── v1.0.1
Installed PositiveFactorizations ────── v0.2.3
Installed FillArrays ────────────────── v0.8.4
Installed RecursiveArrayTools ───────── v2.1.0
Installed Calculus ──────────────────── v0.5.1
Installed CausalityToolsBase ────────── v0.7.2
Installed Crayons ───────────────────── v4.0.1
Installed MacroTools ────────────────── v0.5.4
Installed DynamicalSystems ──────────── v1.3.0
Installed IntervalArithmetic ────────── v0.16.1
#=#=# ################################################ 66.7%######################################################################## 100.0%
#=#=# 0.7%############### 21.9%####################################### 55.5%################################################################### 93.5%######################################################################## 100.0%
#=#=# # 2.1%#### 6.1%######## 11.4%############# 18.6%################## 26.4%########################## 36.2%#################################### 50.7%################################################ 67.6%################################################################ 89.2%######################################################################## 100.0%
#=#=# ############################################### 65.6%######################################################################## 100.0%
#=#=# ############################## 42.5%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
[5520caf5] + CausalityTools v0.9.9
Updating `~/.julia/environments/v1.5/Manifest.toml`
[621f4979] + AbstractFFTs v0.5.0
[7d9fca2a] + Arpack v0.4.0
[68821587] + Arpack_jll v3.5.0+2
[4fba245c] + ArrayInterface v2.4.1
[13072b0f] + AxisAlgorithms v1.0.0
[b99e7846] + BinaryProvider v0.5.8
[e28b5b4c] + Bootstrap v2.2.0
[96374032] + CRlibm v0.8.0
[49dc2e85] + Calculus v0.5.1
[324d7699] + CategoricalArrays v0.7.7
[5520caf5] + CausalityTools v0.9.9
[b1f25513] + CausalityToolsBase v0.7.2
[d360d2e6] + ChainRulesCore v0.6.1
[608a59af] + ChaosTools v1.9.0
[861a8166] + Combinatorics v0.7.0
[bbf7d656] + CommonSubexpressions v0.2.0
[34da2185] + Compat v2.2.0
[8f4d0f93] + Conda v1.4.1
[187b0558] + ConstructionBase v1.0.0
[a8cc5b0e] + Crayons v4.0.1
[7011085d] + CrossMappings v0.3.4
[717857b8] + DSP v0.6.3
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[5732040d] + DelayEmbeddings v1.3.1
[2b5f629d] + DiffEqBase v6.16.0
[163ba53b] + DiffResults v1.0.2
[b552c78f] + DiffRules v1.0.1
[b4f34e82] + Distances v0.8.2
[31c24e10] + Distributions v0.21.12
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.5
[35a29f4d] + DocumenterTools v0.1.4
[61744808] + DynamicalSystems v1.3.0
[6e36e845] + DynamicalSystemsBase v1.5.2
[90fa49ef] + ErrorfreeArithmetic v0.5.0
[7a1cc6ca] + FFTW v1.2.0
[f5851436] + FFTW_jll v3.3.9+3
[fa42c844] + FastRounding v0.3.1
[1a297f60] + FillArrays v0.8.4
[6a86dc24] + FiniteDiff v2.2.1
[f6369f11] + ForwardDiff v0.10.9
[069b7b12] + FunctionWrappers v1.0.0
[09f84164] + HypothesisTests v0.8.0
[505f98c9] + InplaceOps v0.3.0
[1d5cc7b8] + IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] + Interpolations v0.12.5
[d1acc4aa] + IntervalArithmetic v0.16.1
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[42fd0dbc] + IterativeSolvers v0.8.1
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[5ab0869b] + KernelDensity v0.5.1
[b964fa9f] + LaTeXStrings v1.0.3
[d3d80556] + LineSearches v7.0.1
[fc60dff9] + LombScargle v0.5.0
[856f044c] + MKL_jll v2019.0.117+2
[1914dd2f] + MacroTools v0.5.4
[eff96d63] + Measurements v2.2.0
[e1d29d7a] + Missings v0.4.3
[46d2c3a1] + MuladdMacro v0.2.2
[d41bc354] + NLSolversBase v7.6.1
[77ba4419] + NaNMath v0.3.3
[b8a86587] + NearestNeighbors v0.4.4
[6fe1bfb0] + OffsetArrays v1.0.2
[4536629a] + OpenBLAS_jll v0.3.7+5
[efe28fd5] + OpenSpecFun_jll v0.5.3+1
[429524aa] + Optim v0.20.1
[bac558e1] + OrderedCollections v1.1.0
[90014a1f] + PDMats v0.9.11
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.11
[260eed61] + PerronFrobenius v0.6.0
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.3
[85a6dd25] + PositiveFactorizations v0.2.3
[438e738f] + PyCall v1.91.3
[1fd47b50] + QuadGK v2.3.1
[c84ed2f1] + Ratios v0.4.0
[3cdcf5f2] + RecipesBase v0.7.0
[639c3291] + RecurrenceAnalysis v1.1.1
[731186ca] + RecursiveArrayTools v2.1.0
[f2c3362d] + RecursiveFactorization v0.1.0
[189a3867] + Reexport v0.2.0
[ae029012] + Requires v1.0.1
[79098fc4] + Rmath v0.6.0
[f2b01f46] + Roots v0.8.4
[322a6be2] + Sass v0.1.0
[3cc68bcd] + SetRounding v0.2.0
[1277b4bf] + ShiftedArrays v1.0.0
[05bca326] + SimpleDiffEq v1.1.0
[d5428e67] + Simplices v0.4.1
[a2af1166] + SortingAlgorithms v0.3.1
[276daf66] + SpecialFunctions v0.9.0
[1441a9f6] + StateSpaceReconstruction v0.4.2
[90137ffa] + StaticArrays v0.11.1
[2913bbd2] + StatsBase v0.32.1
[4c63d2b9] + StatsFuns v0.9.4
[3eaba693] + StatsModels v0.6.6
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.1
[c804724b] + TimeseriesSurrogates v0.5.1
[ea221983] + TransferEntropy v0.5.6
[a2a6695c] + TreeViews v0.3.0
[dcd9ba68] + UncertainData v0.10.3
[b8865327] + UnicodePlots v1.2.0
[1986cc42] + Unitful v1.0.0
[81def892] + VersionParsing v1.2.0
[29a6e085] + Wavelets v0.8.0
[efce3f68] + WoodburyMatrices v0.5.0
[700de1a5] + ZygoteRules v0.2.0
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[7b1f6079] + FileWatching
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[4607b0f0] + SuiteSparse
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building Rmath ─────────→ `~/.julia/packages/Rmath/BoBag/deps/build.log`
Building FFTW ──────────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Building Conda ─────────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall ────────→ `~/.julia/packages/PyCall/kAhnQ/deps/build.log`
Building CRlibm ────────→ `~/.julia/packages/CRlibm/NFCH5/deps/build.log`
Building Sass ──────────→ `~/.julia/packages/Sass/EZMlY/deps/build.log`
Building CausalityTools → `~/.julia/packages/CausalityTools/bvmzv/deps/build.log`
Testing CausalityTools
Status `/tmp/jl_5cuh8b/Manifest.toml`
[621f4979] AbstractFFTs v0.5.0
[7d9fca2a] Arpack v0.4.0
[68821587] Arpack_jll v3.5.0+2
[4fba245c] ArrayInterface v2.4.1
[13072b0f] AxisAlgorithms v1.0.0
[b99e7846] BinaryProvider v0.5.8
[e28b5b4c] Bootstrap v2.2.0
[96374032] CRlibm v0.8.0
[49dc2e85] Calculus v0.5.1
[324d7699] CategoricalArrays v0.7.7
[5520caf5] CausalityTools v0.9.9
[b1f25513] CausalityToolsBase v0.7.2
[d360d2e6] ChainRulesCore v0.6.1
[608a59af] ChaosTools v1.9.0
[861a8166] Combinatorics v0.7.0
[bbf7d656] CommonSubexpressions v0.2.0
[34da2185] Compat v2.2.0
[8f4d0f93] Conda v1.4.1
[187b0558] ConstructionBase v1.0.0
[a8cc5b0e] Crayons v4.0.1
[7011085d] CrossMappings v0.3.4
[717857b8] DSP v0.6.3
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.20.2
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[5732040d] DelayEmbeddings v1.3.1
[2b5f629d] DiffEqBase v6.16.0
[163ba53b] DiffResults v1.0.2
[b552c78f] DiffRules v1.0.1
[b4f34e82] Distances v0.8.2
[31c24e10] Distributions v0.21.12
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.5
[35a29f4d] DocumenterTools v0.1.4
[61744808] DynamicalSystems v1.3.0
[6e36e845] DynamicalSystemsBase v1.5.2
[90fa49ef] ErrorfreeArithmetic v0.5.0
[7a1cc6ca] FFTW v1.2.0
[f5851436] FFTW_jll v3.3.9+3
[fa42c844] FastRounding v0.3.1
[1a297f60] FillArrays v0.8.4
[6a86dc24] FiniteDiff v2.2.1
[f6369f11] ForwardDiff v0.10.9
[069b7b12] FunctionWrappers v1.0.0
[09f84164] HypothesisTests v0.8.0
[505f98c9] InplaceOps v0.3.0
[1d5cc7b8] IntelOpenMP_jll v2018.0.3+0
[a98d9a8b] Interpolations v0.12.5
[d1acc4aa] IntervalArithmetic v0.16.1
[41ab1584] InvertedIndices v1.0.0
[c8e1da08] IterTools v1.3.0
[42fd0dbc] IterativeSolvers v0.8.1
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[5ab0869b] KernelDensity v0.5.1
[b964fa9f] LaTeXStrings v1.0.3
[d3d80556] LineSearches v7.0.1
[fc60dff9] LombScargle v0.5.0
[856f044c] MKL_jll v2019.0.117+2
[1914dd2f] MacroTools v0.5.4
[eff96d63] Measurements v2.2.0
[e1d29d7a] Missings v0.4.3
[46d2c3a1] MuladdMacro v0.2.2
[d41bc354] NLSolversBase v7.6.1
[77ba4419] NaNMath v0.3.3
[b8a86587] NearestNeighbors v0.4.4
[6fe1bfb0] OffsetArrays v1.0.2
[4536629a] OpenBLAS_jll v0.3.7+5
[efe28fd5] OpenSpecFun_jll v0.5.3+1
[429524aa] Optim v0.20.1
[bac558e1] OrderedCollections v1.1.0
[90014a1f] PDMats v0.9.11
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.11
[260eed61] PerronFrobenius v0.6.0
[f27b6e38] Polynomials v0.6.0
[2dfb63ee] PooledArrays v0.5.3
[85a6dd25] PositiveFactorizations v0.2.3
[438e738f] PyCall v1.91.3
[1fd47b50] QuadGK v2.3.1
[c84ed2f1] Ratios v0.4.0
[3cdcf5f2] RecipesBase v0.7.0
[639c3291] RecurrenceAnalysis v1.1.1
[731186ca] RecursiveArrayTools v2.1.0
[f2c3362d] RecursiveFactorization v0.1.0
[189a3867] Reexport v0.2.0
[ae029012] Requires v1.0.1
[79098fc4] Rmath v0.6.0
[f2b01f46] Roots v0.8.4
[322a6be2] Sass v0.1.0
[3cc68bcd] SetRounding v0.2.0
[1277b4bf] ShiftedArrays v1.0.0
[05bca326] SimpleDiffEq v1.1.0
[d5428e67] Simplices v0.4.1
[a2af1166] SortingAlgorithms v0.3.1
[276daf66] SpecialFunctions v0.9.0
[1441a9f6] StateSpaceReconstruction v0.4.2
[90137ffa] StaticArrays v0.11.1
[2913bbd2] StatsBase v0.32.1
[4c63d2b9] StatsFuns v0.9.4
[3eaba693] StatsModels v0.6.6
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v1.0.1
[c804724b] TimeseriesSurrogates v0.5.1
[ea221983] TransferEntropy v0.5.6
[a2a6695c] TreeViews v0.3.0
[dcd9ba68] UncertainData v0.10.3
[b8865327] UnicodePlots v1.2.0
[1986cc42] Unitful v1.0.0
[81def892] VersionParsing v1.2.0
[29a6e085] Wavelets v0.8.0
[efce3f68] WoodburyMatrices v0.5.0
[700de1a5] ZygoteRules v0.2.0
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[7b1f6079] FileWatching
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
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[2f01184e] SparseArrays
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Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/kAhnQ/deps/build.log`
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.4.1 | py37h0b6359f_0 14.5 MB
------------------------------------------------------------
Total: 14.5 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.4.1-py37h0b6359f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Update message: ChaosTools v1.9
A method to calculate the expansion entropy for discrete and
continuous systems is now included as `expansionentropy`!
See B. Hunt & E. Ott, ‘Defining Chaos’, Chaos 25.9 (2015).
Update message: DynamicalSystems v1.3
A method that estimates the predictability properties of a
dynamical system has been implemented, following the work of:
Wernecke, H., Sándor, B. & Gros, C.
*How to test for partially predictable chaos*.
See the function `predictability`.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
WARNING: using DelayEmbeddings.AbstractEmbedding in module PerronFrobenius conflicts with an existing identifier.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Update message: UncertainData v0.8.0
----------------
New features
----------------
- Added binned resampling methods that uses `BinnedResampling` and
`BinnedMeanResampling` schemes.
WARNING: Method definition (::Type{PyCall.PyObject})(LinearAlgebra.Adjoint{T, S} where S where T) in module PyCall at /home/pkgeval/.julia/packages/PyCall/kAhnQ/src/numpy.jl:227 overwritten in module Delaunay at /home/pkgeval/.julia/packages/Simplices/HqUrD/src/Delaunay.jl:11.
** incremental compilation may be fatally broken for this module **
Update message: CausalityTools v0.9.0
----------------
New functionality
----------------
#### TransferEntropy.jl
- Added [`NearestNeighbourMI`](@ref) transfer entropy estimator.
- Added [`transferentropy(::Any, ::TEVars, ::NearestNeighbourMI)`](@ref) method.
- Transfer entropy estimators now contain a field `b` which gives the base of the logarithm
used during transfer entropy computations, and hence dictates the unit of the transfer
entropy. By default, `b = 2`, which gives the transfer entropy in bits. The keyword `b`
is thus obsolete in all transfer entropy methods that used it before.
#### CausalityTools.jl
- Added [`NearestNeighbourMITest`](@ref) transfer entropy test.
- Added [`NormalisedPredictiveAsymmetryTest`](@ref), for which the predictive asymmetry
is normalised to some fraction of the mean of the raw values of the predictive statistic.
- All subtypes of `CausalityTest` are now mutable. This allows adjusting test
parameters during sensitivity analyses without creating a new test every time.
#### TimeseriesSurrogates.jl
- Plotting functionality is behind a Requires-block. To use the plotting functionality, you
now need to do `using Plots` beforehand.
### Documentation
- Fixed small error in documentation for `DiscreteSystemSetup`.
- Created high-level pages for transfer entropy. Re-did documentation.
- Created high-level pages for cross mappings.
Test Summary: | Pass Total
Discrete example systems | 26 26
Test Summary: | Pass Total
Continuous example systems | 18 18
Test Summary: | Pass Total
High level wrappers | 11 11
Test Summary: | Pass Total
Causality tests on scalar time series | 37 37
Test Summary: | Pass Total
DynamicalSystems.jl integration | 12 12
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Neither `source` nor `target` are uncertain. Not constraining them.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/validate_constraints.jl:43
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
┌ Warning: Performing causality test on uncertain index-value datasets without explicitly providing sequential sampling constraints. Results may be nonsensical, because the values are not sampled according to increasing indices.
└ @ CausalityTools.IntegrationUncertainData ~/.julia/packages/CausalityTools/bvmzv/src/integration_uncertaindata/integration_with_uncertaindata_using_schemes.jl:13
Test Summary: | Pass Total
UncertainData.jl integration | 237 237
Testing CausalityTools tests passed