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1.5.0-DEV-6a9a92683d.log
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1.5.0-DEV-6a9a92683d.log
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Julia Version 1.5.0-DEV.299
Commit 6a9a92683d (2020-02-20 07:47 UTC)
Platform Info:
OS: Linux (x86_64-pc-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed IniFile ───────────────────── v0.5.0
Installed Codecs ────────────────────── v0.5.0
Installed Bio ───────────────────────── v1.0.0
Installed Compat ────────────────────── v2.2.0
Installed CodecZlib ─────────────────── v0.6.0
Installed ColorTypes ────────────────── v0.9.1
Installed IterTools ─────────────────── v1.3.0
Installed BinaryProvider ────────────── v0.5.8
Installed URIParser ─────────────────── v0.4.0
Installed Combinatorics ─────────────── v0.7.0
Installed JLD2 ──────────────────────── v0.1.11
Installed MetaGraphs ────────────────── v0.6.5
Installed OrderedCollections ────────── v1.1.0
Installed EzXML ─────────────────────── v0.9.5
Installed JSON ──────────────────────── v0.21.0
Installed LightGraphs ───────────────── v1.3.0
Installed YAML ──────────────────────── v0.3.2
Installed MMTF ──────────────────────── v0.1.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed Inflate ───────────────────── v0.1.1
Installed Tables ────────────────────── v1.0.1
Installed BioCore ───────────────────── v2.0.5
Installed BioSymbols ────────────────── v3.1.0
Installed PooledArrays ──────────────── v0.5.3
Installed BioAlignments ─────────────── v1.0.1
Installed MsgPack ───────────────────── v0.2.0
Installed TableTraits ───────────────── v1.0.0
Installed Twiddle ───────────────────── v1.1.1
Installed SortingAlgorithms ─────────── v0.3.1
Installed RecipesBase ───────────────── v0.7.0
Installed BioTools ──────────────────── v1.0.0
Installed DataValueInterfaces ───────── v1.0.0
Installed SimpleTraits ──────────────── v0.9.1
Installed Libz ──────────────────────── v1.0.1
Installed Gumbo ─────────────────────── v0.7.0
Installed TranscodingStreams ────────── v0.9.5
Installed Automa ────────────────────── v0.8.0
Installed HTTP ──────────────────────── v0.8.8
Installed CategoricalArrays ─────────── v0.7.7
Installed BioSequences ──────────────── v1.1.0
Installed Format ────────────────────── v1.1.0
Installed Polynomials ───────────────── v0.6.0
Installed Reexport ──────────────────── v0.2.0
Installed BufferedStreams ───────────── v1.0.0
Installed StaticArrays ──────────────── v0.12.1
Installed FixedPointNumbers ─────────── v0.7.1
Installed BioStructures ─────────────── v0.9.2
Installed BioServices ───────────────── v0.3.2
Installed GeneticVariation ──────────── v0.4.0
Installed IndexableBitVectors ───────── v1.0.0
Installed FileIO ────────────────────── v1.2.2
Installed Missings ──────────────────── v0.4.3
Installed DataStructures ────────────── v0.17.9
Installed Parsers ───────────────────── v0.3.11
Installed InvertedIndices ───────────── v1.0.0
Installed DataAPI ───────────────────── v1.1.0
Installed AbstractTrees ─────────────── v0.3.2
Installed DataFrames ────────────────── v0.20.2
Installed ArnoldiMethod ─────────────── v0.0.4
Installed BGZFStreams ───────────────── v0.3.0
Installed MacroTools ────────────────── v0.5.4
Installed IntervalTrees ─────────────── v1.0.0
Installed GenomicFeatures ───────────── v1.0.4
Installed MbedTLS ───────────────────── v0.7.0
Installed XMLDict ───────────────────── v0.4.0
Updating `~/.julia/environments/v1.5/Project.toml`
[3637df68] + Bio v1.0.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[1520ce14] + AbstractTrees v0.3.2
[ec485272] + ArnoldiMethod v0.0.4
[67c07d97] + Automa v0.8.0
[28d598bf] + BGZFStreams v0.3.0
[b99e7846] + BinaryProvider v0.5.8
[3637df68] + Bio v1.0.0
[00701ae9] + BioAlignments v1.0.1
[37cfa864] + BioCore v2.0.5
[7e6ae17a] + BioSequences v1.1.0
[a0d4ced5] + BioServices v0.3.2
[de9282ab] + BioStructures v0.9.2
[3c28c6f8] + BioSymbols v3.1.0
[fa51a905] + BioTools v1.0.0
[e1450e63] + BufferedStreams v1.0.0
[324d7699] + CategoricalArrays v0.7.7
[944b1d66] + CodecZlib v0.6.0
[19ecbf4d] + Codecs v0.5.0
[3da002f7] + ColorTypes v0.9.1
[861a8166] + Combinatorics v0.7.0
[34da2185] + Compat v2.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.2
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[8f5d6c58] + EzXML v0.9.5
[5789e2e9] + FileIO v1.2.2
[53c48c17] + FixedPointNumbers v0.7.1
[1fa38f19] + Format v1.1.0
[9bc6ac9d] + GeneticVariation v0.4.0
[899a7d2d] + GenomicFeatures v1.0.4
[708ec375] + Gumbo v0.7.0
[cd3eb016] + HTTP v0.8.8
[1cb3b9ac] + IndexableBitVectors v1.0.0
[d25df0c9] + Inflate v0.1.1
[83e8ac13] + IniFile v0.5.0
[524e6230] + IntervalTrees v1.0.0
[41ab1584] + InvertedIndices v1.0.0
[c8e1da08] + IterTools v1.3.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[033835bb] + JLD2 v0.1.11
[682c06a0] + JSON v0.21.0
[2ec943e9] + Libz v1.0.1
[093fc24a] + LightGraphs v1.3.0
[259c3a9c] + MMTF v0.1.0
[1914dd2f] + MacroTools v0.5.4
[739be429] + MbedTLS v0.7.0
[626554b9] + MetaGraphs v0.6.5
[e1d29d7a] + Missings v0.4.3
[99f44e22] + MsgPack v0.2.0
[bac558e1] + OrderedCollections v1.1.0
[69de0a69] + Parsers v0.3.11
[f27b6e38] + Polynomials v0.6.0
[2dfb63ee] + PooledArrays v0.5.3
[3cdcf5f2] + RecipesBase v0.7.0
[189a3867] + Reexport v0.2.0
[699a6c99] + SimpleTraits v0.9.1
[a2af1166] + SortingAlgorithms v0.3.1
[90137ffa] + StaticArrays v0.12.1
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v1.0.1
[3bb67fe8] + TranscodingStreams v0.9.5
[7200193e] + Twiddle v1.1.1
[30578b45] + URIParser v0.4.0
[228000da] + XMLDict v0.4.0
[ddb6d928] + YAML v0.3.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[9abbd945] + Profile
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building EzXML ────→ `~/.julia/packages/EzXML/QtGgF/deps/build.log`
Building Gumbo ────→ `~/.julia/packages/Gumbo/OhZJu/deps/build.log`
Building MbedTLS ──→ `~/.julia/packages/MbedTLS/a1JFn/deps/build.log`
Testing Bio
┌ Error: Pkg.Resolve.ResolverError("empty intersection between [email protected] and project compatibility 0.4", nothing)
└ @ Pkg.Operations /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1365
Status `/tmp/jl_mWPKza/Manifest.toml`
[1520ce14] AbstractTrees v0.3.2
[67c07d97] Automa v0.8.0
[28d598bf] BGZFStreams v0.3.0
[b99e7846] BinaryProvider v0.5.8
[3637df68] Bio v1.0.0
[00701ae9] BioAlignments v1.0.1
[37cfa864] BioCore v2.0.5
[7e6ae17a] BioSequences v1.1.0
[a0d4ced5] BioServices v0.3.2
[de9282ab] BioStructures v0.4.0
[3c28c6f8] BioSymbols v3.1.0
[fa51a905] BioTools v1.0.0
[e1450e63] BufferedStreams v1.0.0
[944b1d66] CodecZlib v0.6.0
[19ecbf4d] Codecs v0.5.0
[3da002f7] ColorTypes v0.9.1
[861a8166] Combinatorics v0.7.0
[34da2185] Compat v2.2.0
[864edb3b] DataStructures v0.17.9
[8f5d6c58] EzXML v0.9.5
[53c48c17] FixedPointNumbers v0.7.1
[1fa38f19] Format v0.8.0
[9bc6ac9d] GeneticVariation v0.4.0
[899a7d2d] GenomicFeatures v1.0.4
[708ec375] Gumbo v0.7.0
[cd3eb016] HTTP v0.8.8
[1cb3b9ac] IndexableBitVectors v1.0.0
[83e8ac13] IniFile v0.5.0
[524e6230] IntervalTrees v1.0.0
[c8e1da08] IterTools v1.3.0
[682c06a0] JSON v0.21.0
[2ec943e9] Libz v1.0.1
[739be429] MbedTLS v0.7.0
[bac558e1] OrderedCollections v1.1.0
[69de0a69] Parsers v0.3.11
[f27b6e38] Polynomials v0.5.3
[3cdcf5f2] RecipesBase v0.8.0
[3bb67fe8] TranscodingStreams v0.9.5
[7200193e] Twiddle v1.1.1
[30578b45] URIParser v0.4.0
[228000da] XMLDict v0.4.0
[ddb6d928] YAML v0.3.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[9abbd945] Profile
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
ERROR: LoadError: syntax: missing separator in array expression
Stacktrace:
[1] top-level scope at /home/pkgeval/.julia/packages/Bio/ROwA7/test/runtests.jl:9
[2] include(::String) at ./client.jl:441
[3] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/Bio/ROwA7/test/runtests.jl:9
ERROR: Package Bio errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /buildworker/worker/package_linux64/build/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13