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1.5.0-DEV-7206b56e94.log
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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed VersionParsing ────────────── v1.2.0
Installed LeftChildRightSiblingTrees ── v0.1.2
Installed TreeViews ─────────────────── v0.3.0
Installed SciPyDiffEq ───────────────── v0.2.0
Installed FunctionWrappers ──────────── v1.1.1
Installed Conda ─────────────────────── v1.4.1
Installed Roots ─────────────────────── v1.0.0
Installed Parameters ────────────────── v0.12.0
Installed LoggingExtras ─────────────── v0.4.0
Installed RecursiveFactorization ────── v0.1.0
Installed AbstractTrees ─────────────── v0.3.2
Installed ZygoteRules ───────────────── v0.2.0
Installed Reexport ──────────────────── v0.2.0
Installed ProgressMeter ─────────────── v1.2.0
Installed StaticArrays ──────────────── v0.12.1
Installed DocStringExtensions ───────── v0.8.1
Installed RecipesBase ───────────────── v0.8.0
Installed JSON ──────────────────────── v0.21.0
Installed DataStructures ────────────── v0.17.10
Installed Parsers ───────────────────── v0.3.12
Installed Requires ──────────────────── v1.0.1
Installed MuladdMacro ───────────────── v0.2.2
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed RecursiveArrayTools ───────── v2.1.0
Installed ProgressLogging ───────────── v0.1.2
Installed ChainRulesCore ────────────── v0.7.1
Installed IterativeSolvers ──────────── v0.8.1
Installed TerminalLoggers ───────────── v0.1.1
Installed ConsoleProgressMonitor ────── v0.1.2
Installed ArrayInterface ────────────── v2.5.1
Installed TableTraits ───────────────── v1.0.0
Installed OrderedCollections ────────── v1.1.0
Installed MacroTools ────────────────── v0.5.4
Installed PyCall ────────────────────── v1.91.4
Installed DiffEqBase ────────────────── v6.24.0
Updating `~/.julia/environments/v1.5/Project.toml`
505e40e9 + SciPyDiffEq v0.2.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
1520ce14 + AbstractTrees v0.3.2
4fba245c + ArrayInterface v2.5.1
d360d2e6 + ChainRulesCore v0.7.1
8f4d0f93 + Conda v1.4.1
88cd18e8 + ConsoleProgressMonitor v0.1.2
864edb3b + DataStructures v0.17.10
2b5f629d + DiffEqBase v6.24.0
ffbed154 + DocStringExtensions v0.8.1
069b7b12 + FunctionWrappers v1.1.1
42fd0dbc + IterativeSolvers v0.8.1
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
1d6d02ad + LeftChildRightSiblingTrees v0.1.2
e6f89c97 + LoggingExtras v0.4.0
1914dd2f + MacroTools v0.5.4
46d2c3a1 + MuladdMacro v0.2.2
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
33c8b6b6 + ProgressLogging v0.1.2
92933f4c + ProgressMeter v1.2.0
438e738f + PyCall v1.91.4
3cdcf5f2 + RecipesBase v0.8.0
731186ca + RecursiveArrayTools v2.1.0
f2c3362d + RecursiveFactorization v0.1.0
189a3867 + Reexport v0.2.0
ae029012 + Requires v1.0.1
f2b01f46 + Roots v1.0.0
505e40e9 + SciPyDiffEq v0.2.0
90137ffa + StaticArrays v0.12.1
3783bdb8 + TableTraits v1.0.0
5d786b92 + TerminalLoggers v0.1.1
a2a6695c + TreeViews v0.3.0
81def892 + VersionParsing v1.2.0
700de1a5 + ZygoteRules v0.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Testing SciPyDiffEq
Status `/tmp/jl_xjR7Yn/Project.toml`
2b5f629d DiffEqBase v6.24.0
438e738f PyCall v1.91.4
189a3867 Reexport v0.2.0
505e40e9 SciPyDiffEq v0.2.0
8dfed614 Test
Status `/tmp/jl_xjR7Yn/Manifest.toml`
1520ce14 AbstractTrees v0.3.2
4fba245c ArrayInterface v2.5.1
d360d2e6 ChainRulesCore v0.7.1
8f4d0f93 Conda v1.4.1
88cd18e8 ConsoleProgressMonitor v0.1.2
864edb3b DataStructures v0.17.10
2b5f629d DiffEqBase v6.24.0
ffbed154 DocStringExtensions v0.8.1
069b7b12 FunctionWrappers v1.1.1
42fd0dbc IterativeSolvers v0.8.1
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
1d6d02ad LeftChildRightSiblingTrees v0.1.2
e6f89c97 LoggingExtras v0.4.0
1914dd2f MacroTools v0.5.4
46d2c3a1 MuladdMacro v0.2.2
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
33c8b6b6 ProgressLogging v0.1.2
92933f4c ProgressMeter v1.2.0
438e738f PyCall v1.91.4
3cdcf5f2 RecipesBase v0.8.0
731186ca RecursiveArrayTools v2.1.0
f2c3362d RecursiveFactorization v0.1.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
f2b01f46 Roots v1.0.0
505e40e9 SciPyDiffEq v0.2.0
90137ffa StaticArrays v0.12.1
3783bdb8 TableTraits v1.0.0
5d786b92 TerminalLoggers v0.1.1
a2a6695c TreeViews v0.3.0
81def892 VersionParsing v1.2.0
700de1a5 ZygoteRules v0.2.0
2a0f44e3 Base64
ade2ca70 Dates
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package scipy.integrate could not be found by pyimport. Usually this means
that you did not install scipy.integrate in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the scipy.integrate module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the scipy.integrate module, you can use `pyimport_conda("scipy.integrate", PKG)`,
where PKG is the Anaconda package the contains the module scipy.integrate,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
[3] __init__() at /home/pkgeval/.julia/packages/SciPyDiffEq/VrG9g/src/SciPyDiffEq.jl:18
[4] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[5] _require_from_serialized(::String) at ./loading.jl:748
[6] _require(::Base.PkgId) at ./loading.jl:1039
[7] require(::Base.PkgId) at ./loading.jl:927
[8] require(::Module, ::Symbol) at ./loading.jl:922
[9] include(::String) at ./client.jl:441
[10] top-level scope at none:6
during initialization of module SciPyDiffEq
in expression starting at /home/pkgeval/.julia/packages/SciPyDiffEq/VrG9g/test/runtests.jl:1
ERROR: Package SciPyDiffEq errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13