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1.5.0-DEV-7206b56e94.log
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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed VersionParsing ─────────────── v1.2.0
Installed FixedPointNumbers ──────────── v0.8.0
Installed CodecZlib ──────────────────── v0.6.0
Installed QHull ──────────────────────── v0.2.0
Installed Conda ──────────────────────── v1.4.1
Installed BenchmarkTools ─────────────── v0.5.0
Installed StaticArrays ───────────────── v0.12.1
Installed Polyhedra ──────────────────── v0.6.1
Installed DiffResults ────────────────── v1.0.2
Installed MbedTLS_jll ────────────────── v2.16.0+1
Installed CommonSubexpressions ───────── v0.2.0
Installed NaNMath ────────────────────── v0.3.3
Installed GeometryTypes ──────────────── v0.7.6
Installed MutableArithmetics ─────────── v0.2.7
Installed JSON ───────────────────────── v0.21.0
Installed DataStructures ─────────────── v0.17.10
Installed ColorTypes ─────────────────── v0.10.0
Installed IterTools ──────────────────── v1.3.0
Installed Calculus ───────────────────── v0.5.1
Installed CompilerSupportLibraries_jll ─ v0.3.0+0
Installed Parsers ────────────────────── v0.3.12
Installed RecipesBase ────────────────── v0.8.0
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed SpecialFunctions ───────────── v0.10.0
Installed IniFile ────────────────────── v0.5.0
Installed JSONSchema ─────────────────── v0.2.0
Installed MacroTools ─────────────────── v0.5.4
Installed BinaryProvider ─────────────── v0.5.8
Installed HTTP ───────────────────────── v0.8.12
Installed ForwardDiff ────────────────── v0.10.9
Installed JuMP ───────────────────────── v0.21.1
Installed MathOptInterface ───────────── v0.9.12
Installed CodecBzip2 ─────────────────── v0.6.0
Installed DiffRules ──────────────────── v1.0.1
Installed OrderedCollections ─────────── v1.1.0
Installed TranscodingStreams ─────────── v0.9.5
Installed MbedTLS ────────────────────── v1.0.1
Installed ParameterJuMP ──────────────── v0.2.0
Installed PyCall ─────────────────────── v1.91.4
#=#=# ################################### 48.7%######################################################################## 100.0%
#=#=# ## 3.5%######## 11.6%############### 21.0%######################### 35.3%################################ 45.6%################################################# 68.3%############################################################ 83.7%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
a8468747 + QHull v0.2.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
6e4b80f9 + BenchmarkTools v0.5.0
b99e7846 + BinaryProvider v0.5.8
49dc2e85 + Calculus v0.5.1
523fee87 + CodecBzip2 v0.6.0
944b1d66 + CodecZlib v0.6.0
3da002f7 + ColorTypes v0.10.0
bbf7d656 + CommonSubexpressions v0.2.0
e66e0078 + CompilerSupportLibraries_jll v0.3.0+0
8f4d0f93 + Conda v1.4.1
864edb3b + DataStructures v0.17.10
163ba53b + DiffResults v1.0.2
b552c78f + DiffRules v1.0.1
53c48c17 + FixedPointNumbers v0.8.0
f6369f11 + ForwardDiff v0.10.9
4d00f742 + GeometryTypes v0.7.6
cd3eb016 + HTTP v0.8.12
83e8ac13 + IniFile v0.5.0
c8e1da08 + IterTools v1.3.0
682c06a0 + JSON v0.21.0
7d188eb4 + JSONSchema v0.2.0
4076af6c + JuMP v0.21.1
1914dd2f + MacroTools v0.5.4
b8f27783 + MathOptInterface v0.9.12
739be429 + MbedTLS v1.0.1
c8ffd9c3 + MbedTLS_jll v2.16.0+1
d8a4904e + MutableArithmetics v0.2.7
77ba4419 + NaNMath v0.3.3
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
774612a8 + ParameterJuMP v0.2.0
69de0a69 + Parsers v0.3.12
67491407 + Polyhedra v0.6.1
438e738f + PyCall v1.91.4
a8468747 + QHull v0.2.0
3cdcf5f2 + RecipesBase v0.8.0
276daf66 + SpecialFunctions v0.10.0
90137ffa + StaticArrays v0.12.1
3bb67fe8 + TranscodingStreams v0.9.5
81def892 + VersionParsing v1.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building Conda ─────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building CodecZlib ─→ `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building PyCall ────→ `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Building CodecBzip2 → `~/.julia/packages/CodecBzip2/T5yr7/deps/build.log`
Testing QHull
Status `/tmp/jl_nMUdMH/Project.toml`
861a8166 Combinatorics v1.0.0
60bf3e95 GLPK v0.12.1
4d00f742 GeometryTypes v0.7.6
4076af6c JuMP v0.21.1
67491407 Polyhedra v0.6.1
438e738f PyCall v1.91.4
a8468747 QHull v0.2.0
3cdcf5f2 RecipesBase v0.8.0
90137ffa StaticArrays v0.12.1
8dfed614 Test
Status `/tmp/jl_nMUdMH/Manifest.toml`
6e4b80f9 BenchmarkTools v0.5.0
b99e7846 BinaryProvider v0.5.8
49dc2e85 Calculus v0.5.1
523fee87 CodecBzip2 v0.6.0
944b1d66 CodecZlib v0.6.0
3da002f7 ColorTypes v0.10.0
861a8166 Combinatorics v1.0.0
bbf7d656 CommonSubexpressions v0.2.0
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
8f4d0f93 Conda v1.4.1
864edb3b DataStructures v0.17.10
163ba53b DiffResults v1.0.2
b552c78f DiffRules v1.0.1
53c48c17 FixedPointNumbers v0.8.0
f6369f11 ForwardDiff v0.10.9
60bf3e95 GLPK v0.12.1
4d00f742 GeometryTypes v0.7.6
cd3eb016 HTTP v0.8.12
83e8ac13 IniFile v0.5.0
c8e1da08 IterTools v1.3.0
682c06a0 JSON v0.21.0
7d188eb4 JSONSchema v0.2.0
4076af6c JuMP v0.21.1
1914dd2f MacroTools v0.5.4
b8f27783 MathOptInterface v0.9.12
739be429 MbedTLS v1.0.1
c8ffd9c3 MbedTLS_jll v2.16.0+1
d8a4904e MutableArithmetics v0.2.7
77ba4419 NaNMath v0.3.3
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
774612a8 ParameterJuMP v0.2.0
69de0a69 Parsers v0.3.12
67491407 Polyhedra v0.6.1
f27b6e38 Polynomials v0.6.1
438e738f PyCall v1.91.4
a8468747 QHull v0.2.0
3cdcf5f2 RecipesBase v0.8.0
276daf66 SpecialFunctions v0.10.0
90137ffa StaticArrays v0.12.1
3bb67fe8 TranscodingStreams v0.9.5
81def892 VersionParsing v1.2.0
2a0f44e3 Base64
ade2ca70 Dates
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
ERROR: LoadError: InitError: PyError (PyImport_ImportModule
The Python package scipy.spatial could not be found by pyimport. Usually this means
that you did not install scipy.spatial in the Python version being used by PyCall.
PyCall is currently configured to use the Python version at:
/usr/bin/python3
and you should use whatever mechanism you usually use (apt-get, pip, conda,
etcetera) to install the Python package containing the scipy.spatial module.
One alternative is to re-configure PyCall to use a different Python
version on your system: set ENV["PYTHON"] to the path/name of the python
executable you want to use, run Pkg.build("PyCall"), and re-launch Julia.
Another alternative is to configure PyCall to use a Julia-specific Python
distribution via the Conda.jl package (which installs a private Anaconda
Python distribution), which has the advantage that packages can be installed
and kept up-to-date via Julia. As explained in the PyCall documentation,
set ENV["PYTHON"]="", run Pkg.build("PyCall"), and re-launch Julia. Then,
To install the scipy.spatial module, you can use `pyimport_conda("scipy.spatial", PKG)`,
where PKG is the Anaconda package the contains the module scipy.spatial,
or alternatively you can use the Conda package directly (via
`using Conda` followed by `Conda.add` etcetera).
) <class 'ModuleNotFoundError'>
ModuleNotFoundError("No module named 'scipy'",)
Stacktrace:
[1] pyimport(::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:536
[2] pyimport_conda(::String, ::String, ::String) at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:694
[3] pyimport_conda at /home/pkgeval/.julia/packages/PyCall/zqDXB/src/PyCall.jl:693 [inlined]
[4] __init__() at /home/pkgeval/.julia/packages/QHull/ck7jQ/src/QHull.jl:16
[5] _include_from_serialized(::String, ::Array{Any,1}) at ./loading.jl:697
[6] _require_from_serialized(::String) at ./loading.jl:748
[7] _require(::Base.PkgId) at ./loading.jl:1039
[8] require(::Base.PkgId) at ./loading.jl:927
[9] require(::Module, ::Symbol) at ./loading.jl:922
[10] include(::String) at ./client.jl:441
[11] top-level scope at none:6
during initialization of module QHull
in expression starting at /home/pkgeval/.julia/packages/QHull/ck7jQ/test/runtests.jl:2
ERROR: Package QHull errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13