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1.5.0-DEV-7206b56e94.log
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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Parsers ──────────── v0.3.12
Installed CxxWrap ──────────── v0.9.0
Installed BinDeps ──────────── v1.0.0
Installed CMake ────────────── v1.2.0
Installed MacroTools ───────── v0.5.4
Installed BinaryProvider ───── v0.5.8
Installed AbstractAlgebra ──── v0.8.1
Installed Polymake ─────────── v0.3.1
Installed URIParser ────────── v0.4.0
Installed JSON ─────────────── v0.21.0
Installed OrderedCollections ─ v1.1.0
Installed DataStructures ───── v0.17.10
Installed Nemo ─────────────── v0.16.4
Updating `~/.julia/environments/v1.5/Project.toml`
d720cf60 + Polymake v0.3.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
c3fe647b + AbstractAlgebra v0.8.1
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
631607c0 + CMake v1.2.0
1f15a43c + CxxWrap v0.9.0
864edb3b + DataStructures v0.17.10
682c06a0 + JSON v0.21.0
1914dd2f + MacroTools v0.5.4
2edaba10 + Nemo v0.16.4
bac558e1 + OrderedCollections v1.1.0
69de0a69 + Parsers v0.3.12
d720cf60 + Polymake v0.3.1
30578b45 + URIParser v0.4.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building Nemo ────→ `~/.julia/packages/Nemo/xJHVO/deps/build.log`
Building CxxWrap ─→ `~/.julia/packages/CxxWrap/lDNAy/deps/build.log`
Building CMake ───→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Polymake → `~/.julia/packages/Polymake/JQdC8/deps/build.log`
┌ Error: Error building `Polymake`:
│
│ signal (11): Segmentation fault
│ in expression starting at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/StdLib.jl:16
│ sig_match_simple at /workspace/srcdir/src/typemap.c:128 [inlined]
│ jl_typemap_entry_assoc_exact at /workspace/srcdir/src/typemap.c:664
│ jl_typemap_assoc_exact at /workspace/srcdir/src/julia_internal.h:1065 [inlined]
│ jl_lookup_generic_ at /workspace/srcdir/src/gf.c:2280 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2332
│ build_function_expression at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:544
│ wrap_functions at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:629
│ _jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ wrapfunctions at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:652
│ wrapmodule at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:672
│ unknown function (ip: 0x7fdb878d3200)
│ _jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
│ do_call at /workspace/srcdir/src/interpreter.c:369
│ eval_value at /workspace/srcdir/src/interpreter.c:458
│ eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
│ eval_body at /workspace/srcdir/src/interpreter.c:821
│ jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
│ jl_eval_module_expr at /workspace/srcdir/src/toplevel.c:180
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:639
│ jl_parse_eval_all at /workspace/srcdir/src/ast.c:910
│ jl_load_rewrite at /workspace/srcdir/src/toplevel.c:874
│ include at ./Base.jl:380
│ include at ./Base.jl:368 [inlined]
│ include at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:1
│ _jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
│ do_call at /workspace/srcdir/src/interpreter.c:369
│ eval_value at /workspace/srcdir/src/interpreter.c:458
│ eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
│ eval_body at /workspace/srcdir/src/interpreter.c:821
│ jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
│ jl_eval_module_expr at /workspace/srcdir/src/toplevel.c:180
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:639
│ jl_parse_eval_all at /workspace/srcdir/src/ast.c:910
│ jl_load_rewrite at /workspace/srcdir/src/toplevel.c:874
│ include at ./Base.jl:380
│ include at ./Base.jl:368
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
│ do_call at /workspace/srcdir/src/interpreter.c:369
│ eval_value at /workspace/srcdir/src/interpreter.c:458
│ eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
│ eval_body at /workspace/srcdir/src/interpreter.c:821
│ eval_body at /workspace/srcdir/src/interpreter.c:744
│ jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
│ jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:843
│ eval at ./boot.jl:331 [inlined]
│ eval at ./client.jl:451
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ top-level scope at ./none:3
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:807
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:763
│ jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:843
│ eval at ./boot.jl:331
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ exec_options at ./client.jl:264
│ _start at ./client.jl:490
│ jfptr__start_44182.clone_1 at /opt/julia/lib/julia/sys.so (unknown line)
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/ui/../src/julia.h:1685 [inlined]
│ true_main at /workspace/srcdir/ui/repl.c:96
│ main at /workspace/srcdir/ui/repl.c:217
│ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
│ unknown function (ip: 0x4015e4)
│ Allocations: 14591030 (Pool: 14588177; Big: 2853); GC: 16
│ ERROR: LoadError: Failed to precompile CxxWrap [1f15a43c-97ca-5a2a-ae31-89f07a497df4] to /home/pkgeval/.julia/compiled/v1.5/CxxWrap/WGIJU_rfNgO.ji.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
│ [3] _require(::Base.PkgId) at ./loading.jl:1029
│ [4] require(::Base.PkgId) at ./loading.jl:927
│ [5] require(::Module, ::Symbol) at ./loading.jl:922
│ [6] include(::String) at ./client.jl:441
│ [7] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/Polymake/JQdC8/deps/build.jl:1
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:912
Testing Polymake
Status `/tmp/jl_GR2DeD/Project.toml`
b99e7846 BinaryProvider v0.5.8
631607c0 CMake v1.2.0
1f15a43c CxxWrap v0.9.0
682c06a0 JSON v0.21.0
2edaba10 Nemo v0.16.4
d720cf60 Polymake v0.3.1
8f399da3 Libdl
d6f4376e Markdown
44cfe95a Pkg
3fa0cd96 REPL
2f01184e SparseArrays
8dfed614 Test
Status `/tmp/jl_GR2DeD/Manifest.toml`
c3fe647b AbstractAlgebra v0.8.1
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
631607c0 CMake v1.2.0
1f15a43c CxxWrap v0.9.0
864edb3b DataStructures v0.17.10
682c06a0 JSON v0.21.0
1914dd2f MacroTools v0.5.4
2edaba10 Nemo v0.16.4
bac558e1 OrderedCollections v1.1.0
69de0a69 Parsers v0.3.12
d720cf60 Polymake v0.3.1
30578b45 URIParser v0.4.0
2a0f44e3 Base64
ade2ca70 Dates
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
signal (11): Segmentation fault
in expression starting at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/StdLib.jl:16
jl_field_offset at /workspace/srcdir/src/julia.h:1007 [inlined]
set_nth_field at /workspace/srcdir/src/datatype.c:1063
jl_f_tuple at /workspace/srcdir/src/builtins.c:732
protect_from_gc at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:320
_jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
unknown function (ip: 0x7fc1445b9743)
_ZN5jlcxx15protect_from_gcEP11_jl_value_t at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/deps/usr/lib/libcxxwrap_julia.so (unknown line)
_ZN5jlcxx6Module17add_type_internalINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_13ParameterListIJEEE11_jl_value_tEENS_11TypeWrapperIT_EERKS7_PT1_ at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/deps/usr/lib/libcxxwrap_julia_stl.so (unknown line)
define_cxxwrap_stl_module at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/deps/usr/lib/libcxxwrap_julia_stl.so (unknown line)
register_julia_module at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/deps/usr/lib/libcxxwrap_julia.so (unknown line)
register_julia_module at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:360 [inlined]
readmodule at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:664
wrapmodule at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:670
unknown function (ip: 0x7fc1445e5230)
_jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
do_call at /workspace/srcdir/src/interpreter.c:369
eval_value at /workspace/srcdir/src/interpreter.c:458
eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
eval_body at /workspace/srcdir/src/interpreter.c:821
jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
jl_eval_module_expr at /workspace/srcdir/src/toplevel.c:180
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:639
jl_parse_eval_all at /workspace/srcdir/src/ast.c:910
jl_load_rewrite at /workspace/srcdir/src/toplevel.c:874
include at ./Base.jl:380
include at ./Base.jl:368 [inlined]
include at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:1
_jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
do_call at /workspace/srcdir/src/interpreter.c:369
eval_value at /workspace/srcdir/src/interpreter.c:458
eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
eval_body at /workspace/srcdir/src/interpreter.c:821
jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
jl_eval_module_expr at /workspace/srcdir/src/toplevel.c:180
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:639
jl_parse_eval_all at /workspace/srcdir/src/ast.c:910
jl_load_rewrite at /workspace/srcdir/src/toplevel.c:874
include at ./Base.jl:380
include at ./Base.jl:368
_jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
do_call at /workspace/srcdir/src/interpreter.c:369
eval_value at /workspace/srcdir/src/interpreter.c:458
eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
eval_body at /workspace/srcdir/src/interpreter.c:821
eval_body at /workspace/srcdir/src/interpreter.c:744
jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:843
eval at ./boot.jl:331 [inlined]
eval at ./client.jl:451
_jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
top-level scope at ./none:3
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:807
jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:763
jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:843
eval at ./boot.jl:331
_jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
exec_options at ./client.jl:264
_start at ./client.jl:490
jfptr__start_44182.clone_1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
jl_apply_generic at /workspace/srcdir/src/gf.c:2336
jl_apply at /workspace/srcdir/ui/../src/julia.h:1685 [inlined]
true_main at /workspace/srcdir/ui/repl.c:96
main at /workspace/srcdir/ui/repl.c:217
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4015e4)
Allocations: 5695614 (Pool: 5693992; Big: 1622); GC: 7
ERROR: LoadError: Failed to precompile CxxWrap [1f15a43c-97ca-5a2a-ae31-89f07a497df4] to /home/pkgeval/.julia/compiled/v1.5/CxxWrap/WGIJU_fvexm.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:451
[11] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Polymake/JQdC8/src/Polymake.jl:17
ERROR: LoadError: Failed to precompile Polymake [d720cf60-89b5-51f5-aff5-213f193123e7] to /home/pkgeval/.julia/compiled/v1.5/Polymake/QizyK_fvexm.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:441
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/Polymake/JQdC8/test/runtests.jl:9
ERROR: Package Polymake errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13