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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ──────────── v0.3.1
Installed LaTeXStrings ───────────────── v1.1.0
Installed Parameters ─────────────────── v0.12.0
Installed Conda ──────────────────────── v1.4.1
Installed FFTW ───────────────────────── v1.2.0
Installed CausalityToolsBase ─────────── v0.7.4
Installed Distributions ──────────────── v0.22.6
Installed PerronFrobenius ────────────── v0.6.0
Installed VersionParsing ─────────────── v1.2.0
Installed LeftChildRightSiblingTrees ─── v0.1.2
Installed TreeViews ──────────────────── v0.3.0
Installed Simplices ──────────────────── v0.5.0
Installed Roots ──────────────────────── v1.0.0
Installed FunctionWrappers ───────────── v1.1.1
Installed OffsetArrays ───────────────── v1.0.3
Installed PDMats ─────────────────────── v0.9.12
Installed LoggingExtras ──────────────── v0.4.0
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed AxisAlgorithms ─────────────── v1.0.0
Installed LombScargle ────────────────── v0.5.0
Installed QuadGK ─────────────────────── v2.3.1
Installed AbstractTrees ──────────────── v0.3.2
Installed Distances ──────────────────── v0.8.2
Installed DiffResults ────────────────── v1.0.2
Installed StatsFuns ──────────────────── v0.9.4
Installed DocStringExtensions ────────── v0.8.1
Installed RecursiveFactorization ─────── v0.1.0
Installed StaticArrays ───────────────── v0.12.1
Installed ZygoteRules ────────────────── v0.2.0
Installed Combinatorics ──────────────── v1.0.0
Installed CommonSubexpressions ───────── v0.2.0
Installed StatsBase ──────────────────── v0.32.2
Installed JSON ───────────────────────── v0.21.0
Installed IntervalArithmetic ─────────── v0.16.1
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed NaNMath ────────────────────── v0.3.3
Installed CompilerSupportLibraries_jll ─ v0.3.0+0
Installed DynamicalSystemsBase ───────── v1.5.3
Installed IterTools ──────────────────── v1.3.0
Installed DataStructures ─────────────── v0.17.10
Installed ChaosTools ─────────────────── v1.9.0
Installed Interpolations ─────────────── v0.12.5
Installed Calculus ───────────────────── v0.5.1
Installed SetRounding ────────────────── v0.2.0
Installed Reexport ───────────────────── v0.2.0
Installed ProgressMeter ──────────────── v1.2.0
Installed Rmath ──────────────────────── v0.6.1
Installed ErrorfreeArithmetic ────────── v0.5.0
Installed RecipesBase ────────────────── v0.8.0
Installed DSP ────────────────────────── v0.6.3
Installed StateSpaceReconstruction ───── v0.4.2
Installed SimpleDiffEq ───────────────── v1.1.0
Installed Parsers ────────────────────── v0.3.12
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed DataAPI ────────────────────── v1.1.0
Installed AbstractFFTs ───────────────── v0.5.0
Installed SpecialFunctions ───────────── v0.9.0
Installed IterativeSolvers ───────────── v0.8.1
Installed Polynomials ────────────────── v0.6.1
Installed ChainRulesCore ─────────────── v0.7.1
Installed Measurements ───────────────── v2.1.1
Installed Missings ───────────────────── v0.4.3
Installed WoodburyMatrices ───────────── v0.5.1
Installed FFTW_jll ───────────────────── v3.3.9+4
Installed DelayEmbeddings ────────────── v1.3.1
Installed Requires ───────────────────── v1.0.1
Installed ProgressLogging ────────────── v0.1.2
Installed MuladdMacro ────────────────── v0.2.2
Installed NearestNeighbors ───────────── v0.4.4
Installed FastRounding ───────────────── v0.3.1
Installed RecursiveArrayTools ────────── v2.1.0
Installed IntelOpenMP_jll ────────────── v2018.0.3+0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed TerminalLoggers ────────────── v0.1.1
Installed DiffEqBase ─────────────────── v6.24.0
Installed Ratios ─────────────────────── v0.4.0
Installed MKL_jll ────────────────────── v2019.0.117+2
Installed ConsoleProgressMonitor ─────── v0.1.2
Installed Arpack ─────────────────────── v0.4.0
Installed CRlibm ─────────────────────── v0.8.0
Installed ArrayInterface ─────────────── v2.5.1
Installed MacroTools ─────────────────── v0.5.4
Installed PyCall ─────────────────────── v1.91.4
Installed InplaceOps ─────────────────── v0.3.0
Installed ForwardDiff ────────────────── v0.10.9
Installed DiffRules ──────────────────── v1.0.1
Installed OrderedCollections ─────────── v1.1.0
Installed TableTraits ────────────────── v1.0.0
Installed FillArrays ─────────────────── v0.8.5
######### 13.7%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ####### 9.9%############################## 42.7%################################################################ 88.9%######################################################################## 100.0%
#=#=# ######## 11.9%########################################### 60.6%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
0.7%######################################################################## 100.0%
# 2.3%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
260eed61 + PerronFrobenius v0.6.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
621f4979 + AbstractFFTs v0.5.0
1520ce14 + AbstractTrees v0.3.2
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
4fba245c + ArrayInterface v2.5.1
13072b0f + AxisAlgorithms v1.0.0
96374032 + CRlibm v0.8.0
49dc2e85 + Calculus v0.5.1
b1f25513 + CausalityToolsBase v0.7.4
d360d2e6 + ChainRulesCore v0.7.1
608a59af + ChaosTools v1.9.0
861a8166 + Combinatorics v1.0.0
bbf7d656 + CommonSubexpressions v0.2.0
e66e0078 + CompilerSupportLibraries_jll v0.3.0+0
8f4d0f93 + Conda v1.4.1
88cd18e8 + ConsoleProgressMonitor v0.1.2
717857b8 + DSP v0.6.3
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
5732040d + DelayEmbeddings v1.3.1
2b5f629d + DiffEqBase v6.24.0
163ba53b + DiffResults v1.0.2
b552c78f + DiffRules v1.0.1
b4f34e82 + Distances v0.8.2
31c24e10 + Distributions v0.22.6
ffbed154 + DocStringExtensions v0.8.1
6e36e845 + DynamicalSystemsBase v1.5.3
90fa49ef + ErrorfreeArithmetic v0.5.0
7a1cc6ca + FFTW v1.2.0
f5851436 + FFTW_jll v3.3.9+4
fa42c844 + FastRounding v0.3.1
1a297f60 + FillArrays v0.8.5
f6369f11 + ForwardDiff v0.10.9
069b7b12 + FunctionWrappers v1.1.1
505f98c9 + InplaceOps v0.3.0
1d5cc7b8 + IntelOpenMP_jll v2018.0.3+0
a98d9a8b + Interpolations v0.12.5
d1acc4aa + IntervalArithmetic v0.16.1
c8e1da08 + IterTools v1.3.0
42fd0dbc + IterativeSolvers v0.8.1
82899510 + IteratorInterfaceExtensions v1.0.0
682c06a0 + JSON v0.21.0
b964fa9f + LaTeXStrings v1.1.0
1d6d02ad + LeftChildRightSiblingTrees v0.1.2
e6f89c97 + LoggingExtras v0.4.0
fc60dff9 + LombScargle v0.5.0
856f044c + MKL_jll v2019.0.117+2
1914dd2f + MacroTools v0.5.4
eff96d63 + Measurements v2.1.1
e1d29d7a + Missings v0.4.3
46d2c3a1 + MuladdMacro v0.2.2
77ba4419 + NaNMath v0.3.3
b8a86587 + NearestNeighbors v0.4.4
6fe1bfb0 + OffsetArrays v1.0.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
260eed61 + PerronFrobenius v0.6.0
f27b6e38 + Polynomials v0.6.1
33c8b6b6 + ProgressLogging v0.1.2
92933f4c + ProgressMeter v1.2.0
438e738f + PyCall v1.91.4
1fd47b50 + QuadGK v2.3.1
c84ed2f1 + Ratios v0.4.0
3cdcf5f2 + RecipesBase v0.8.0
731186ca + RecursiveArrayTools v2.1.0
f2c3362d + RecursiveFactorization v0.1.0
189a3867 + Reexport v0.2.0
ae029012 + Requires v1.0.1
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
f2b01f46 + Roots v1.0.0
3cc68bcd + SetRounding v0.2.0
05bca326 + SimpleDiffEq v1.1.0
d5428e67 + Simplices v0.5.0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.9.0
1441a9f6 + StateSpaceReconstruction v0.4.2
90137ffa + StaticArrays v0.12.1
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
3783bdb8 + TableTraits v1.0.0
5d786b92 + TerminalLoggers v0.1.1
a2a6695c + TreeViews v0.3.0
81def892 + VersionParsing v1.2.0
efce3f68 + WoodburyMatrices v0.5.1
700de1a5 + ZygoteRules v0.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building FFTW ──→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Building CRlibm → `~/.julia/packages/CRlibm/NFCH5/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Testing PerronFrobenius
Status `/tmp/jl_SKxGhQ/Project.toml`
b1f25513 CausalityToolsBase v0.7.4
8f4d0f93 Conda v1.4.1
5732040d DelayEmbeddings v1.3.1
505f98c9 InplaceOps v0.3.0
d1acc4aa IntervalArithmetic v0.16.1
b964fa9f LaTeXStrings v1.1.0
260eed61 PerronFrobenius v0.6.0
438e738f PyCall v1.91.4
3cdcf5f2 RecipesBase v0.8.0
189a3867 Reexport v0.2.0
d5428e67 Simplices v0.5.0
1441a9f6 StateSpaceReconstruction v0.4.2
90137ffa StaticArrays v0.12.1
8ba89e20 Distributed
37e2e46d LinearAlgebra
de0858da Printf
1a1011a3 SharedArrays
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_SKxGhQ/Manifest.toml`
621f4979 AbstractFFTs v0.5.0
1520ce14 AbstractTrees v0.3.2
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
4fba245c ArrayInterface v2.5.1
13072b0f AxisAlgorithms v1.0.0
96374032 CRlibm v0.8.0
49dc2e85 Calculus v0.5.1
b1f25513 CausalityToolsBase v0.7.4
d360d2e6 ChainRulesCore v0.7.1
608a59af ChaosTools v1.9.0
861a8166 Combinatorics v1.0.0
bbf7d656 CommonSubexpressions v0.2.0
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
8f4d0f93 Conda v1.4.1
88cd18e8 ConsoleProgressMonitor v0.1.2
717857b8 DSP v0.6.3
9a962f9c DataAPI v1.1.0
864edb3b DataStructures v0.17.10
5732040d DelayEmbeddings v1.3.1
2b5f629d DiffEqBase v6.24.0
163ba53b DiffResults v1.0.2
b552c78f DiffRules v1.0.1
b4f34e82 Distances v0.8.2
31c24e10 Distributions v0.22.6
ffbed154 DocStringExtensions v0.8.1
6e36e845 DynamicalSystemsBase v1.5.3
90fa49ef ErrorfreeArithmetic v0.5.0
7a1cc6ca FFTW v1.2.0
f5851436 FFTW_jll v3.3.9+4
fa42c844 FastRounding v0.3.1
1a297f60 FillArrays v0.8.5
f6369f11 ForwardDiff v0.10.9
069b7b12 FunctionWrappers v1.1.1
505f98c9 InplaceOps v0.3.0
1d5cc7b8 IntelOpenMP_jll v2018.0.3+0
a98d9a8b Interpolations v0.12.5
d1acc4aa IntervalArithmetic v0.16.1
c8e1da08 IterTools v1.3.0
42fd0dbc IterativeSolvers v0.8.1
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
b964fa9f LaTeXStrings v1.1.0
1d6d02ad LeftChildRightSiblingTrees v0.1.2
e6f89c97 LoggingExtras v0.4.0
fc60dff9 LombScargle v0.5.0
856f044c MKL_jll v2019.0.117+2
1914dd2f MacroTools v0.5.4
eff96d63 Measurements v2.1.1
e1d29d7a Missings v0.4.3
46d2c3a1 MuladdMacro v0.2.2
77ba4419 NaNMath v0.3.3
b8a86587 NearestNeighbors v0.4.4
6fe1bfb0 OffsetArrays v1.0.3
4536629a OpenBLAS_jll v0.3.7+7
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
260eed61 PerronFrobenius v0.6.0
f27b6e38 Polynomials v0.6.1
33c8b6b6 ProgressLogging v0.1.2
92933f4c ProgressMeter v1.2.0
438e738f PyCall v1.91.4
1fd47b50 QuadGK v2.3.1
c84ed2f1 Ratios v0.4.0
3cdcf5f2 RecipesBase v0.8.0
731186ca RecursiveArrayTools v2.1.0
f2c3362d RecursiveFactorization v0.1.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
f2b01f46 Roots v1.0.0
3cc68bcd SetRounding v0.2.0
05bca326 SimpleDiffEq v1.1.0
d5428e67 Simplices v0.5.0
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.9.0
1441a9f6 StateSpaceReconstruction v0.4.2
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
3783bdb8 TableTraits v1.0.0
5d786b92 TerminalLoggers v0.1.1
a2a6695c TreeViews v0.3.0
81def892 VersionParsing v1.2.0
efce3f68 WoodburyMatrices v0.5.1
700de1a5 ZygoteRules v0.2.0
2a0f44e3 Base64
ade2ca70 Dates
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
Building Conda ─→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building PyCall → `~/.julia/packages/PyCall/zqDXB/deps/build.log`
[ Info: Running `conda install -q -y scipy` in root environment
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/pkgeval/.julia/conda/3
added / updated specs:
- scipy
The following packages will be downloaded:
package | build
---------------------------|-----------------
scipy-1.4.1 | py37h0b6359f_0 14.5 MB
------------------------------------------------------------
Total: 14.5 MB
The following NEW packages will be INSTALLED:
scipy pkgs/main/linux-64::scipy-1.4.1-py37h0b6359f_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Update message: ChaosTools v1.9
A method to calculate the expansion entropy for discrete and
continuous systems is now included as `expansionentropy`!
See B. Hunt & E. Ott, ‘Defining Chaos’, Chaos 25.9 (2015).
WARNING: using DelayEmbeddings.AbstractEmbedding in module PerronFrobenius conflicts with an existing identifier.
Test Summary: | Pass Total
RectangularInvariantMeasure, constructor | 8 8
Test Summary: | Pass Total
RectangularInvariantMeasure, different inputs | 6 6
Test Summary: | Pass Total
Grid estimator | 2 2
Test Summary: | Pass Total
Transfer operator from rectangular binnings | 27 27
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = reshape_simplices(::Array{Array{Float64,1},1}, ::DelaunayTriangulation) at reshape_simplices.jl:38
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/reshape_simplices.jl:38
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = transferoperator_triangulation_approx(::Array{Array{Float64,1},1}, ::DelaunayTriangulation; n_sample_pts::Int64, sample_randomly::Bool) at transferoperator_triangulation_approximate.jl:144
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:144
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = transferoperator_triangulation_approx(::Array{Array{Float64,1},1}, ::DelaunayTriangulation; n_sample_pts::Int64, sample_randomly::Bool) at transferoperator_triangulation_approximate.jl:145
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:145
┌ Warning: `Size{S}(a::Array)` is deprecated, use `SizedVector{N}(a)`, `SizedMatrix{N,M}(a)` or `SizedArray{Tuple{S}}(a)` instead
│ caller = transferoperator_triangulation_approx(::Array{Array{Float64,1},1}, ::DelaunayTriangulation; n_sample_pts::Int64, sample_randomly::Bool) at transferoperator_triangulation_approximate.jl:146
└ @ PerronFrobenius.TransferOperators.Estimators ~/.julia/packages/PerronFrobenius/zuJmf/src/TransferOperators/Estimators/triangulation/approximate/transferoperator_triangulation_approximate.jl:146
Test Summary: | Pass Total
Triangulation estimators | 4 4
Testing PerronFrobenius tests passed