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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed CodecZlib ──────────── v0.7.0
Installed SortingAlgorithms ──── v0.3.1
Installed GZip ───────────────── v0.5.1
Installed TextWrap ───────────── v1.0.1
Installed StaticArrays ───────── v0.12.1
Installed Zlib_jll ───────────── v1.2.11+8
Installed Distances ──────────── v0.8.2
Installed StatsBase ──────────── v0.32.2
Installed Clustering ─────────── v0.13.5
Installed MIToS ──────────────── v2.4.0
Installed Combinatorics ──────── v1.0.0
Installed ProgressMeter ──────── v1.2.0
Installed AutoHashEquals ─────── v0.2.0
Installed MbedTLS_jll ────────── v2.16.0+1
Installed InvertedIndices ────── v1.0.0
Installed LightXML ───────────── v0.8.1
Installed RecipesBase ────────── v0.8.0
Installed DataAPI ────────────── v1.1.0
Installed ArgParse ───────────── v1.1.0
Installed BinaryProvider ─────── v0.5.8
Installed PairwiseListMatrices ─ v0.7.0
Installed DataStructures ─────── v0.17.10
Installed IniFile ────────────── v0.5.0
Installed Missings ───────────── v0.4.3
Installed Polynomials ────────── v0.6.1
Installed HTTP ───────────────── v0.8.12
Installed Requires ───────────── v1.0.1
Installed NamedArrays ────────── v0.9.4
Installed Formatting ─────────── v0.4.1
Installed NearestNeighbors ───── v0.4.4
Installed OrderedCollections ─── v1.1.0
Installed MbedTLS ────────────── v1.0.1
Installed TranscodingStreams ─── v0.9.5
Installed FastaIO ────────────── v1.0.0
#=#=# ######################################################################## 100.0%
#=#=# ############ 17.3%######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
51bafb47 + MIToS v2.4.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
c7e460c6 + ArgParse v1.1.0
15f4f7f2 + AutoHashEquals v0.2.0
b99e7846 + BinaryProvider v0.5.8
aaaa29a8 + Clustering v0.13.5
944b1d66 + CodecZlib v0.7.0
861a8166 + Combinatorics v1.0.0
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
b4f34e82 + Distances v0.8.2
a0c94c4b + FastaIO v1.0.0
59287772 + Formatting v0.4.1
92fee26a + GZip v0.5.1
cd3eb016 + HTTP v0.8.12
83e8ac13 + IniFile v0.5.0
41ab1584 + InvertedIndices v1.0.0
9c8b4983 + LightXML v0.8.1
51bafb47 + MIToS v2.4.0
739be429 + MbedTLS v1.0.1
c8ffd9c3 + MbedTLS_jll v2.16.0+1
e1d29d7a + Missings v0.4.3
86f7a689 + NamedArrays v0.9.4
b8a86587 + NearestNeighbors v0.4.4
bac558e1 + OrderedCollections v1.1.0
f9da4da7 + PairwiseListMatrices v0.7.0
f27b6e38 + Polynomials v0.6.1
92933f4c + ProgressMeter v1.2.0
3cdcf5f2 + RecipesBase v0.8.0
ae029012 + Requires v1.0.1
a2af1166 + SortingAlgorithms v0.3.1
90137ffa + StaticArrays v0.12.1
2913bbd2 + StatsBase v0.32.2
b718987f + TextWrap v1.0.1
3bb67fe8 + TranscodingStreams v0.9.5
83775a58 + Zlib_jll v1.2.11+8
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building LightXML → `~/.julia/packages/LightXML/W8FVT/deps/build.log`
Testing MIToS
#=#=# ##O#- # ##O=# # ### 4.3%########## 14.1%################# 23.8%############################ 39.8%######################################### 58.3%########################################################### 82.7%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Status `/tmp/jl_Gw1ntr/Project.toml`
c7e460c6 ArgParse v1.1.0
15f4f7f2 AutoHashEquals v0.2.0
aaaa29a8 Clustering v0.13.5
944b1d66 CodecZlib v0.7.0
864edb3b DataStructures v0.17.10
a0c94c4b FastaIO v1.0.0
59287772 Formatting v0.4.1
cd3eb016 HTTP v0.8.12
9c8b4983 LightXML v0.8.1
51bafb47 MIToS v2.4.0
86f7a689 NamedArrays v0.9.4
f9da4da7 PairwiseListMatrices v0.7.0
92933f4c ProgressMeter v1.2.0
f535d66d ROCAnalysis v0.3.1
3cdcf5f2 RecipesBase v0.8.0
ae029012 Requires v1.0.1
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
3bb67fe8 TranscodingStreams v0.9.5
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
37e2e46d LinearAlgebra
44cfe95a Pkg
9a3f8284 Random
9e88b42a Serialization
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_Gw1ntr/Manifest.toml`
c7e460c6 ArgParse v1.1.0
15f4f7f2 AutoHashEquals v0.2.0
b99e7846 BinaryProvider v0.5.8
336ed68f CSV v0.5.26
324d7699 CategoricalArrays v0.7.7
aaaa29a8 Clustering v0.13.5
944b1d66 CodecZlib v0.7.0
861a8166 Combinatorics v1.0.0
34da2185 Compat v3.8.0
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
b4f34e82 Distances v0.8.2
a0c94c4b FastaIO v1.0.0
48062228 FilePathsBase v0.7.0
59287772 Formatting v0.4.1
92fee26a GZip v0.5.1
cd3eb016 HTTP v0.8.12
83e8ac13 IniFile v0.5.0
41ab1584 InvertedIndices v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
9c8b4983 LightXML v0.8.1
51bafb47 MIToS v2.4.0
739be429 MbedTLS v1.0.1
c8ffd9c3 MbedTLS_jll v2.16.0+1
e1d29d7a Missings v0.4.3
86f7a689 NamedArrays v0.9.4
b8a86587 NearestNeighbors v0.4.4
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
f9da4da7 PairwiseListMatrices v0.7.0
69de0a69 Parsers v0.3.12
f27b6e38 Polynomials v0.6.1
2dfb63ee PooledArrays v0.5.3
92933f4c ProgressMeter v1.2.0
f535d66d ROCAnalysis v0.3.1
3cdcf5f2 RecipesBase v0.8.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v1.0.3
b718987f TextWrap v1.0.1
3bb67fe8 TranscodingStreams v0.9.5
ea10d353 WeakRefStrings v0.6.2
83775a58 Zlib_jll v1.2.11+8
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
Test Summary: | Pass Total
Utils | 31 31
Test Summary: | Pass Total
MSA | 25945 25945
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:530
Cloning git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l Fetching: [> ] 0.0 %[2K[?25h Updating git-repo `https://github.com/carlobaldassi/GaussDCA.jl`
[?25l[2K[?25hInformation: Error During Test at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:46
Got exception outside of a @test
LoadError: could not find project file in package at https://github.com/carlobaldassi/GaussDCA.jl
Stacktrace:
[1] pkgerror(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] resolve_projectfile!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec, ::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:625
[3] (::Pkg.Types.var"#58#59"{Pkg.Types.Context,Pkg.Types.PackageSpec})(::LibGit2.GitRepo) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:598
[4] with(::Pkg.Types.var"#58#59"{Pkg.Types.Context,Pkg.Types.PackageSpec}, ::LibGit2.GitRepo) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/LibGit2/src/types.jl:1125
[5] handle_repo_add!(::Pkg.Types.Context, ::Pkg.Types.PackageSpec) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:558
[6] handle_repos_add!(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:616
[7] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; preserve::Pkg.Types.PreserveLevel, platform::Pkg.BinaryPlatforms.Linux, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:139
[8] add(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:112
[9] #add#27 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:109 [inlined]
[10] add at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:109 [inlined]
[11] #add#23 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:106 [inlined]
[12] add(::Pkg.Types.PackageSpec) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:106
[13] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/Information/Externals.jl:4
[14] include(::String) at ./client.jl:441
[15] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:53
[16] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[17] top-level scope at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:47
[18] include(::String) at ./client.jl:441
[19] top-level scope at none:6
[20] eval(::Module, ::Any) at ./boot.jl:331
[21] exec_options(::Base.JLOptions) at ./client.jl:264
[22] _start() at ./client.jl:490
in expression starting at /home/pkgeval/.julia/packages/MIToS/Hha81/test/Information/Externals.jl:3
Test Summary: | Pass Error Total
Information | 741 1 742
ContingencyTables | 430 430
Counters | 191 191
Information Measures | 49 49
Iterations | 6 6
CorrectedMutualInformation | 55 55
Pairwise Gap Percentage | 10 10
ERROR: LoadError: Some tests did not pass: 741 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/MIToS/Hha81/test/runtests.jl:46
ERROR: Package MIToS errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13