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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ────── v0.3.1
Installed Parameters ───────────── v0.12.0
Installed FFTW ─────────────────── v1.2.0
Installed LineSearches ─────────── v7.0.1
Installed OffsetArrays ─────────── v1.0.3
Installed Clustering ───────────── v0.13.5
Installed Distributions ────────── v0.23.0
Installed Kpax3 ────────────────── v0.5.2
Installed PDMats ───────────────── v0.9.12
Installed KernelDensity ────────── v0.5.1
Installed Rmath_jll ────────────── v0.2.2+0
Installed Arpack_jll ───────────── v3.5.0+2
Installed AxisAlgorithms ───────── v1.0.0
Installed CodecZlib ────────────── v0.7.0
Installed BinDeps ──────────────── v1.0.0
Installed QuadGK ───────────────── v2.3.1
Installed Distances ────────────── v0.8.2
Installed JLD2 ─────────────────── v0.1.3
Installed DiffResults ──────────── v1.0.2
Installed StatsFuns ────────────── v0.9.4
Installed StatsBase ────────────── v0.32.2
Installed StaticArrays ─────────── v0.12.1
Installed Optim ────────────────── v0.20.4
Installed Zlib_jll ─────────────── v1.2.11+8
Installed OpenBLAS_jll ─────────── v0.3.7+7
Installed Reexport ─────────────── v0.2.0
Installed NaNMath ──────────────── v0.3.3
Installed CommonSubexpressions ─── v0.2.0
Installed Rmath ────────────────── v0.6.1
Installed RecipesBase ──────────── v0.8.0
Installed DataStructures ───────── v0.17.10
Installed SpecialFunctions ─────── v0.8.0
Installed Interpolations ───────── v0.12.5
Installed DataAPI ──────────────── v1.1.0
Installed PositiveFactorizations ─ v0.2.3
Installed Missings ─────────────── v0.4.3
Installed WoodburyMatrices ─────── v0.5.1
Installed FFTW_jll ─────────────── v3.3.9+4
Installed AbstractFFTs ─────────── v0.5.0
Installed BinaryProvider ───────── v0.5.8
Installed FileIO ───────────────── v1.2.3
Installed Requires ─────────────── v1.0.1
Installed MKL_jll ──────────────── v2019.0.117+2
Installed IntelOpenMP_jll ──────── v2018.0.3+0
Installed FiniteDiff ───────────── v2.2.1
Installed URIParser ────────────── v0.4.0
Installed NearestNeighbors ─────── v0.4.4
Installed Ratios ───────────────── v0.4.0
Installed ArrayInterface ───────── v2.5.1
Installed Arpack ───────────────── v0.4.0
Installed Compat ───────────────── v3.8.0
Installed FillArrays ───────────── v0.8.5
Installed DiffRules ────────────── v1.0.1
Installed ForwardDiff ──────────── v0.10.9
Installed TranscodingStreams ───── v0.9.5
Installed OrderedCollections ───── v1.1.0
Installed NLSolversBase ────────── v7.6.1
#=#=# ######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# # 2.1%#### 6.4%######## 12.0%############## 19.6%##################### 29.7%############################# 41.4%######################################### 57.3%####################################################### 77.5%######################################################################## 100.0%
#=#=# ####### 10.2%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
ad72c4b6 + Kpax3 v0.5.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
621f4979 + AbstractFFTs v0.5.0
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
4fba245c + ArrayInterface v2.5.1
13072b0f + AxisAlgorithms v1.0.0
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
aaaa29a8 + Clustering v0.13.5
944b1d66 + CodecZlib v0.7.0
bbf7d656 + CommonSubexpressions v0.2.0
34da2185 + Compat v3.8.0
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
163ba53b + DiffResults v1.0.2
b552c78f + DiffRules v1.0.1
b4f34e82 + Distances v0.8.2
31c24e10 + Distributions v0.23.0
7a1cc6ca + FFTW v1.2.0
f5851436 + FFTW_jll v3.3.9+4
5789e2e9 + FileIO v1.2.3
1a297f60 + FillArrays v0.8.5
6a86dc24 + FiniteDiff v2.2.1
f6369f11 + ForwardDiff v0.10.9
1d5cc7b8 + IntelOpenMP_jll v2018.0.3+0
a98d9a8b + Interpolations v0.12.5
033835bb + JLD2 v0.1.3
5ab0869b + KernelDensity v0.5.1
ad72c4b6 + Kpax3 v0.5.2
d3d80556 + LineSearches v7.0.1
856f044c + MKL_jll v2019.0.117+2
e1d29d7a + Missings v0.4.3
d41bc354 + NLSolversBase v7.6.1
77ba4419 + NaNMath v0.3.3
b8a86587 + NearestNeighbors v0.4.4
6fe1bfb0 + OffsetArrays v1.0.3
4536629a + OpenBLAS_jll v0.3.7+7
429524aa + Optim v0.20.4
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
d96e819e + Parameters v0.12.0
85a6dd25 + PositiveFactorizations v0.2.3
1fd47b50 + QuadGK v2.3.1
c84ed2f1 + Ratios v0.4.0
3cdcf5f2 + RecipesBase v0.8.0
189a3867 + Reexport v0.2.0
ae029012 + Requires v1.0.1
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.8.0
90137ffa + StaticArrays v0.12.1
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
3bb67fe8 + TranscodingStreams v0.9.5
30578b45 + URIParser v0.4.0
efce3f68 + WoodburyMatrices v0.5.1
83775a58 + Zlib_jll v1.2.11+8
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building FFTW ────────────→ `~/.julia/packages/FFTW/qqcBj/deps/build.log`
Building SpecialFunctions → `~/.julia/packages/SpecialFunctions/ne2iw/deps/build.log`
Testing Kpax3
#=#=# ######################################################################## 100.0%
#=#=# ## 3.8%############## 20.1%############################## 41.9%################################################## 69.7%######################################################################## 100.0%
#=#=# ######### 13.5%############################### 44.4%######################################################### 79.5%######################################################################## 100.0%
#=#=# ##O#- # ################################################ 67.6%######################################################################## 100.0%
#=#=# ######################################################### 79.5%######################################################################## 100.0%
#=#=# ####### 9.8%####################################### 54.5%######################################################################## 100.0%
#=#=# ####################### 33.3%######################################################################## 100.0%
#=#=# ##################################### 51.9%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# #### 6.8%################ 22.2%############################### 43.3%################################################# 69.2%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ##################### 29.5%#################################################################### 95.1%######################################################################## 100.0%
#=#=# ################################ 45.3%######################################################################## 100.0%
#=#=# ################################## 47.9%######################################################################## 100.0%
Status `/tmp/jl_XHzvfu/Project.toml`
aaaa29a8 Clustering v0.13.5
b4f34e82 Distances v0.8.2
5789e2e9 FileIO v1.2.3
033835bb JLD2 v0.1.3
5ab0869b KernelDensity v0.5.1
ad72c4b6 Kpax3 v0.5.2
91a5bcdd Plots v0.29.7
3cdcf5f2 RecipesBase v0.8.0
276daf66 SpecialFunctions v0.8.0
2913bbd2 StatsBase v0.32.2
8bb1440f DelimitedFiles
de0858da Printf
9a3f8284 Random
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_XHzvfu/Manifest.toml`
621f4979 AbstractFFTs v0.5.0
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
4fba245c ArrayInterface v2.5.1
13072b0f AxisAlgorithms v1.0.0
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
6e34b625 Bzip2_jll v1.0.6+1
aaaa29a8 Clustering v0.13.5
944b1d66 CodecZlib v0.7.0
3da002f7 ColorTypes v0.10.0
5ae59095 Colors v0.12.0
bbf7d656 CommonSubexpressions v0.2.0
34da2185 Compat v3.8.0
d38c429a Contour v0.5.2
9a962f9c DataAPI v1.1.0
864edb3b DataStructures v0.17.10
163ba53b DiffResults v1.0.2
b552c78f DiffRules v1.0.1
b4f34e82 Distances v0.8.2
31c24e10 Distributions v0.23.0
c87230d0 FFMPEG v0.3.0
b22a6f82 FFMPEG_jll v4.1.0+2
7a1cc6ca FFTW v1.2.0
f5851436 FFTW_jll v3.3.9+4
5789e2e9 FileIO v1.2.3
1a297f60 FillArrays v0.8.5
6a86dc24 FiniteDiff v2.2.1
53c48c17 FixedPointNumbers v0.8.0
f6369f11 ForwardDiff v0.10.9
d7e528f0 FreeType2_jll v2.10.1+1
559328eb FriBidi_jll v1.0.5+2
28b8d3ca GR v0.47.0
4d00f742 GeometryTypes v0.7.6
1d5cc7b8 IntelOpenMP_jll v2018.0.3+0
a98d9a8b Interpolations v0.12.5
c8e1da08 IterTools v1.3.0
033835bb JLD2 v0.1.3
682c06a0 JSON v0.21.0
5ab0869b KernelDensity v0.5.1
ad72c4b6 Kpax3 v0.5.2
c1c5ebd0 LAME_jll v3.100.0+0
dd192d2f LibVPX_jll v1.8.1+1
d3d80556 LineSearches v7.0.1
856f044c MKL_jll v2019.0.117+2
442fdcdd Measures v0.3.1
e1d29d7a Missings v0.4.3
d41bc354 NLSolversBase v7.6.1
77ba4419 NaNMath v0.3.3
b8a86587 NearestNeighbors v0.4.4
6fe1bfb0 OffsetArrays v1.0.3
e7412a2a Ogg_jll v1.3.3+0
4536629a OpenBLAS_jll v0.3.7+7
458c3c95 OpenSSL_jll v1.1.1+1
429524aa Optim v0.20.4
91d4177d Opus_jll v1.3.1+0
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
ccf2f8ad PlotThemes v1.0.1
995b91a9 PlotUtils v0.6.4
91a5bcdd Plots v0.29.7
85a6dd25 PositiveFactorizations v0.2.3
1fd47b50 QuadGK v2.3.1
c84ed2f1 Ratios v0.4.0
3cdcf5f2 RecipesBase v0.8.0
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
992d4aef Showoff v0.3.1
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.8.0
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
3bb67fe8 TranscodingStreams v0.9.5
30578b45 URIParser v0.4.0
efce3f68 WoodburyMatrices v0.5.1
83775a58 Zlib_jll v1.2.11+8
0ac62f75 libass_jll v0.14.0+0
f638f0a6 libfdk_aac_jll v0.1.6+1
f27f6e37 libvorbis_jll v1.3.6+2
1270edf5 x264_jll v2019.5.25+1
dfaa095f x265_jll v3.0.0+0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
Going through tests in 'data_processing/fasta_data_processing.jl'... PASSED!
Going through tests in 'data_processing/csv_data_processing.jl'... PASSED!
Going through tests in 'distances/simovici_jaroszewicz.jl'... PASSED!
Going through tests in 'distances/jaccard.jl'... PASSED!
Going through tests in 'misc/basic_functions.jl'... PASSED!
Going through tests in 'misc/partition_functions.jl'... PASSED!
Going through tests in 'types/settings.jl'... ┌ Warning: `values(wv::AbstractWeights)` is deprecated, use `convert(Vector, wv)` instead.
│ caller = test_settings_constructor() at settings.jl:82
└ @ Main ~/.julia/packages/Kpax3/P8vrG/test/types/settings.jl:82
PASSED!
Going through tests in 'types/data.jl'... PASSED!
Going through tests in 'types/prior_col.jl'... PASSED!
Going through tests in 'types/prior_row.jl'... PASSED!
Going through tests in 'types/state.jl'... PASSED!
Going through tests in 'types/state_list.jl'... PASSED!
Going through tests in 'types/support.jl'... PASSED!
Going through tests in 'model/likelihoods.jl'... PASSED!
Going through tests in 'model/partition_cols.jl'... PASSED!
Going through tests in 'model/partition_rows.jl'... PASSED!
Going through tests in 'model/loss_binder.jl'... PASSED!
Going through tests in 'optimizer/local_mode.jl'... PASSED!
Going through tests in 'optimizer/selection.jl'... PASSED!
Going through tests in 'optimizer/crossover.jl'... PASSED!
Going through tests in 'optimizer/mutation.jl'... PASSED!
Going through tests in 'mcmc/partition_ratios.jl'... PASSED!
Going through tests in 'mcmc/log_likelihoods.jl'... PASSED!
Going through tests in 'mcmc/weight.jl'... PASSED!
Going through tests in 'mcmc/merge.jl'... PASSED!
Going through tests in 'mcmc/split.jl'... PASSED!
Going through tests in 'mcmc/gibbs.jl'... PASSED!
Going through tests in 'mcmc/biased_random_walk.jl'... PASSED!
Going through tests in 'mcmc/posterior.jl'... PASSED!
Going through tests in 'mcmc/diagnostics.jl'... PASSED!
Going through tests in 'estimate/write.jl'... PASSED!
Going through tests in 'plots/plots.jl'... PASSED!
Testing Kpax3 tests passed