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1.5.0-DEV-7206b56e94.log
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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed CxxWrap ──────────── v0.9.0
Installed MacroTools ───────── v0.5.4
Installed BinaryProvider ───── v0.5.8
Installed DataStructures ───── v0.17.10
Installed AbstractAlgebra ──── v0.8.1
Installed HomalgProject ────── v0.1.7
Installed GAP ──────────────── v0.3.4
Installed Singular ─────────── v0.2.0
Installed OrderedCollections ─ v1.1.0
Installed Nemo ─────────────── v0.16.4
Updating `~/.julia/environments/v1.5/Project.toml`
50bd374c + HomalgProject v0.1.7
Updating `~/.julia/environments/v1.5/Manifest.toml`
c3fe647b + AbstractAlgebra v0.8.1
b99e7846 + BinaryProvider v0.5.8
1f15a43c + CxxWrap v0.9.0
864edb3b + DataStructures v0.17.10
c863536a + GAP v0.3.4
50bd374c + HomalgProject v0.1.7
1914dd2f + MacroTools v0.5.4
2edaba10 + Nemo v0.16.4
bac558e1 + OrderedCollections v1.1.0
bcd08a7b + Singular v0.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building CxxWrap ─→ `~/.julia/packages/CxxWrap/lDNAy/deps/build.log`
Building GAP ─────→ `~/.julia/packages/GAP/6rBgt/deps/build.log`
Building Nemo ────→ `~/.julia/packages/Nemo/xJHVO/deps/build.log`
Building Singular → `~/.julia/packages/Singular/htZ55/deps/build.log`
┌ Error: Error building `Singular`:
│
│ signal (11): Segmentation fault
│ in expression starting at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/StdLib.jl:16
│ sig_match_simple at /workspace/srcdir/src/typemap.c:128 [inlined]
│ jl_typemap_entry_assoc_exact at /workspace/srcdir/src/typemap.c:664
│ jl_typemap_assoc_exact at /workspace/srcdir/src/julia_internal.h:1065 [inlined]
│ jl_lookup_generic_ at /workspace/srcdir/src/gf.c:2280 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2332
│ build_function_expression at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:544
│ wrap_functions at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:629
│ _jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ wrapfunctions at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:652
│ wrapmodule at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:672
│ unknown function (ip: 0x7fbecef0b200)
│ _jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
│ do_call at /workspace/srcdir/src/interpreter.c:369
│ eval_value at /workspace/srcdir/src/interpreter.c:458
│ eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
│ eval_body at /workspace/srcdir/src/interpreter.c:821
│ jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
│ jl_eval_module_expr at /workspace/srcdir/src/toplevel.c:180
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:639
│ jl_parse_eval_all at /workspace/srcdir/src/ast.c:910
│ jl_load_rewrite at /workspace/srcdir/src/toplevel.c:874
│ include at ./Base.jl:380
│ include at ./Base.jl:368 [inlined]
│ include at /home/pkgeval/.julia/packages/CxxWrap/lDNAy/src/CxxWrap.jl:1
│ _jl_invoke at /workspace/srcdir/src/gf.c:2169 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
│ do_call at /workspace/srcdir/src/interpreter.c:369
│ eval_value at /workspace/srcdir/src/interpreter.c:458
│ eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
│ eval_body at /workspace/srcdir/src/interpreter.c:821
│ jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
│ jl_eval_module_expr at /workspace/srcdir/src/toplevel.c:180
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:639
│ jl_parse_eval_all at /workspace/srcdir/src/ast.c:910
│ jl_load_rewrite at /workspace/srcdir/src/toplevel.c:874
│ include at ./Base.jl:380
│ include at ./Base.jl:368
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/src/julia.h:1685 [inlined]
│ do_call at /workspace/srcdir/src/interpreter.c:369
│ eval_value at /workspace/srcdir/src/interpreter.c:458
│ eval_stmt_value at /workspace/srcdir/src/interpreter.c:409 [inlined]
│ eval_body at /workspace/srcdir/src/interpreter.c:821
│ eval_body at /workspace/srcdir/src/interpreter.c:744
│ jl_interpret_toplevel_thunk at /workspace/srcdir/src/interpreter.c:915
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:813
│ jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:843
│ eval at ./boot.jl:331 [inlined]
│ eval at ./client.jl:451
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ top-level scope at ./none:3
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:807
│ jl_toplevel_eval_flex at /workspace/srcdir/src/toplevel.c:763
│ jl_toplevel_eval_in at /workspace/srcdir/src/toplevel.c:843
│ eval at ./boot.jl:331
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ exec_options at ./client.jl:264
│ _start at ./client.jl:490
│ jfptr__start_44182.clone_1 at /opt/julia/lib/julia/sys.so (unknown line)
│ _jl_invoke at /workspace/srcdir/src/gf.c:2152 [inlined]
│ jl_apply_generic at /workspace/srcdir/src/gf.c:2336
│ jl_apply at /workspace/srcdir/ui/../src/julia.h:1685 [inlined]
│ true_main at /workspace/srcdir/ui/repl.c:96
│ main at /workspace/srcdir/ui/repl.c:217
│ __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
│ unknown function (ip: 0x4015e4)
│ Allocations: 14590817 (Pool: 14587963; Big: 2854); GC: 17
│ ERROR: LoadError: Failed to precompile CxxWrap [1f15a43c-97ca-5a2a-ae31-89f07a497df4] to /home/pkgeval/.julia/compiled/v1.5/CxxWrap/WGIJU_9wQ0Q.ji.
│ Stacktrace:
│ [1] error(::String) at ./error.jl:33
│ [2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
│ [3] _require(::Base.PkgId) at ./loading.jl:1029
│ [4] require(::Base.PkgId) at ./loading.jl:927
│ [5] require(::Module, ::Symbol) at ./loading.jl:922
│ [6] include(::String) at ./client.jl:441
│ [7] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/Singular/htZ55/deps/build.jl:3
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:912
Testing HomalgProject
Status `/tmp/jl_6i1DmR/Project.toml`
e30172f5 Documenter v0.24.6
c863536a GAP v0.3.4
50bd374c HomalgProject v0.1.7
bcd08a7b Singular v0.2.0
8dfed614 Test
Status `/tmp/jl_6i1DmR/Manifest.toml`
c3fe647b AbstractAlgebra v0.8.1
b99e7846 BinaryProvider v0.5.8
1f15a43c CxxWrap v0.9.0
864edb3b DataStructures v0.17.10
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.6
c863536a GAP v0.3.4
50bd374c HomalgProject v0.1.7
682c06a0 JSON v0.21.0
1914dd2f MacroTools v0.5.4
2edaba10 Nemo v0.16.4
bac558e1 OrderedCollections v1.1.0
69de0a69 Parsers v0.3.12
bcd08a7b Singular v0.2.0
2a0f44e3 Base64
ade2ca70 Dates
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
ERROR: LoadError: IOError: realpath: no such file or directory (ENOENT)
Stacktrace:
[1] uv_error at ./libuv.jl:97 [inlined]
[2] realpath(::String) at ./path.jl:429
[3] top-level scope at /home/pkgeval/.julia/packages/Singular/htZ55/src/Singular.jl:48
[4] include(::Function, ::Module, ::String) at ./Base.jl:380
[5] include(::Module, ::String) at ./Base.jl:368
[6] top-level scope at none:2
[7] eval at ./boot.jl:331 [inlined]
[8] eval(::Expr) at ./client.jl:451
[9] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/Singular/htZ55/src/Singular.jl:48
ERROR: LoadError: Failed to precompile Singular [bcd08a7b-43d2-5ff7-b6d4-c458787f915c] to /home/pkgeval/.julia/compiled/v1.5/Singular/9fz0y_V9lCa.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::Function, ::Module, ::String) at ./Base.jl:380
[7] include(::Module, ::String) at ./Base.jl:368
[8] top-level scope at none:2
[9] eval at ./boot.jl:331 [inlined]
[10] eval(::Expr) at ./client.jl:451
[11] top-level scope at ./none:3
in expression starting at /home/pkgeval/.julia/packages/HomalgProject/dpGQJ/src/HomalgProject.jl:10
ERROR: LoadError: Failed to precompile HomalgProject [50bd374c-87b5-11e9-015a-2febe71398bd] to /home/pkgeval/.julia/compiled/v1.5/HomalgProject/z4ehp_V9lCa.ji.
Stacktrace:
[1] error(::String) at ./error.jl:33
[2] compilecache(::Base.PkgId, ::String) at ./loading.jl:1288
[3] _require(::Base.PkgId) at ./loading.jl:1029
[4] require(::Base.PkgId) at ./loading.jl:927
[5] require(::Module, ::Symbol) at ./loading.jl:922
[6] include(::String) at ./client.jl:441
[7] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/HomalgProject/dpGQJ/test/runtests.jl:1
ERROR: Package HomalgProject errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13