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1.5.0-DEV-7206b56e94.log
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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed HDF5Utils ────────── v0.1.15
Installed ProgressMeter ────── v1.2.0
Installed CMakeWrapper ─────── v0.2.3
Installed CMake ────────────── v1.2.0
Installed Parameters ───────── v0.12.0
Installed BinDeps ──────────── v1.0.0
Installed Blosc ────────────── v0.6.0
Installed BinaryProvider ───── v0.5.8
Installed Glob ─────────────── v1.2.0
Installed URIParser ────────── v0.4.0
Installed Requires ─────────── v0.5.2
Installed Compat ───────────── v2.2.0
Installed FillArrays ───────── v0.7.4
Installed OrderedCollections ─ v1.1.0
Installed HDF5 ─────────────── v0.12.5
Updating `~/.julia/environments/v1.5/Project.toml`
2ec8e600 + HDF5Utils v0.1.15
Updating `~/.julia/environments/v1.5/Manifest.toml`
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
a74b3585 + Blosc v0.6.0
631607c0 + CMake v1.2.0
d5fb7624 + CMakeWrapper v0.2.3
34da2185 + Compat v2.2.0
1a297f60 + FillArrays v0.7.4
c27321d9 + Glob v1.2.0
f67ccb44 + HDF5 v0.12.5
2ec8e600 + HDF5Utils v0.1.15
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
92933f4c + ProgressMeter v1.2.0
ae029012 + Requires v0.5.2
30578b45 + URIParser v0.4.0
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building CMake → `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc → `~/.julia/packages/Blosc/ZgcAM/deps/build.log`
Building HDF5 ─→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Testing HDF5Utils
Status `/tmp/jl_ZyIOZh/Project.toml`
1a297f60 FillArrays v0.7.4
c27321d9 Glob v1.2.0
f67ccb44 HDF5 v0.12.5
2ec8e600 HDF5Utils v0.1.15
92933f4c ProgressMeter v1.2.0
ae029012 Requires v0.5.2
8ba89e20 Distributed
a63ad114 Mmap
9a3f8284 Random
8dfed614 Test
Status `/tmp/jl_ZyIOZh/Manifest.toml`
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
a74b3585 Blosc v0.6.0
631607c0 CMake v1.2.0
d5fb7624 CMakeWrapper v0.2.3
34da2185 Compat v2.2.0
1a297f60 FillArrays v0.7.4
c27321d9 Glob v1.2.0
f67ccb44 HDF5 v0.12.5
2ec8e600 HDF5Utils v0.1.15
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
92933f4c ProgressMeter v1.2.0
ae029012 Requires v0.5.2
30578b45 URIParser v0.4.0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: `@get!(dict, key, default)` at /home/pkgeval/.julia/packages/Requires/9Jse8/src/require.jl:11 is deprecated, use `get!(()->default, dict, key)` instead.
│ caller = include(::Function, ::Module, ::String) at Base.jl:380
└ @ Base ./Base.jl:380
WARNING: Method definition _getindex(HDF5.HDF5Dataset, Type, Union{Int64, Base.AbstractRange{Int64}}...) in module HDF5 at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:1767 overwritten in module HDF5Utils at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/src/hyperslab.jl:2.
** incremental compilation may be fatally broken for this module **
WARNING: Method definition _setindex!(HDF5.HDF5Dataset, Type, Array{T, N} where N where T, Union{Int64, Base.AbstractRange{Int64}}...) in module HDF5 at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:1790 overwritten in module HDF5Utils at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/src/hyperslab.jl:17.
** incremental compilation may be fatally broken for this module **
h5concat.config: 1%|▍ | ETA: 0:00:31[Kh5concat.config: 100%|██████████████████████████████████| Time: 0:00:00[K
ERROR: LoadError: MethodError: no method matching d_create(::HDF5File, ::String, ::HDF5Datatype, ::HDF5Dataspace, ::Int64)
Closest candidates are:
d_create(::Union{HDF5File, HDF5Group}, ::String, ::HDF5Datatype, ::HDF5Dataspace) at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:924
d_create(::Union{HDF5File, HDF5Group}, ::String, ::HDF5Datatype, ::HDF5Dataspace, !Matched::HDF5Properties) at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:924
d_create(::Union{HDF5File, HDF5Group}, ::String, ::HDF5Datatype, ::HDF5Dataspace, !Matched::HDF5Properties, !Matched::HDF5Properties) at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:924
...
Stacktrace:
[1] d_zeros(::HDF5File, ::String, ::Type{T} where T, ::Int64, ::Int64) at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/src/batch.jl:30
[2] macro expansion at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/src/concat.jl:31 [inlined]
[3] macro expansion at /home/pkgeval/.julia/packages/ProgressMeter/g1lse/src/ProgressMeter.jl:717 [inlined]
[4] (::HDF5Utils.var"#17#24"{Int64,Bool,Array{String,1}})(::HDF5File) at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/src/concat.jl:30
[5] h5open(::HDF5Utils.var"#17#24"{Int64,Bool,Array{String,1}}, ::String, ::Vararg{Any,N} where N; swmr::Bool) at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:683
[6] h5open at /home/pkgeval/.julia/packages/HDF5/Zh9on/src/HDF5.jl:681 [inlined]
[7] #h5concat#16 at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/src/concat.jl:4 [inlined]
[8] top-level scope at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/test/runtests.jl:37
[9] include(::String) at ./client.jl:441
[10] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/HDF5Utils/azsqZ/test/runtests.jl:37
ERROR: Package HDF5Utils errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13