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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ──────────── v0.3.1
Installed PDMats ─────────────────────── v0.9.12
Installed Roots ──────────────────────── v0.8.4
Installed ExoplanetsSysSim ───────────── v1.0.1
Installed Parameters ─────────────────── v0.12.0
Installed BinDeps ────────────────────── v1.0.0
Installed DataFrames ─────────────────── v0.20.2
Installed Distributions ──────────────── v0.22.6
Installed QuadGK ─────────────────────── v2.3.1
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed CodecZlib ──────────────────── v0.7.0
Installed CMake ──────────────────────── v1.2.0
Installed DataValueInterfaces ────────── v1.0.0
Installed HDF5 ───────────────────────── v0.12.5
Installed CategoricalArrays ──────────── v0.7.7
Installed LegacyStrings ──────────────── v0.4.1
Installed WeakRefStrings ─────────────── v0.6.2
Installed JLD2 ───────────────────────── v0.1.3
Installed StatsFuns ──────────────────── v0.9.4
Installed JLD ────────────────────────── v0.9.2
Installed StatsBase ──────────────────── v0.32.2
Installed Zlib_jll ───────────────────── v1.2.11+8
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed Combinatorics ──────────────── v1.0.0
Installed JSON ───────────────────────── v0.21.0
Installed CMakeWrapper ───────────────── v0.2.3
Installed CompilerSupportLibraries_jll ─ v0.3.0+0
Installed Reexport ───────────────────── v0.2.0
Installed DataStructures ─────────────── v0.17.10
Installed Rmath ──────────────────────── v0.6.1
Installed RecipesBase ────────────────── v0.8.0
Installed PooledArrays ───────────────── v0.5.3
Installed InvertedIndices ────────────── v1.0.0
Installed Parsers ────────────────────── v0.3.12
Installed SpecialFunctions ───────────── v0.10.0
Installed HypothesisTests ────────────── v0.9.1
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed DataAPI ────────────────────── v1.1.0
Installed Missings ───────────────────── v0.4.3
Installed IteratorInterfaceExtensions ── v1.0.0
Installed BinaryProvider ─────────────── v0.5.8
Installed Polynomials ────────────────── v0.6.1
Installed Blosc ──────────────────────── v0.6.0
Installed CSV ────────────────────────── v0.5.26
Installed Tables ─────────────────────── v1.0.3
Installed FileIO ─────────────────────── v1.2.3
Installed URIParser ──────────────────── v0.4.0
Installed Arpack ─────────────────────── v0.4.0
Installed Compat ─────────────────────── v2.2.0
Installed FilePathsBase ──────────────── v0.7.0
Installed OrderedCollections ─────────── v1.1.0
Installed TableTraits ────────────────── v1.0.0
Installed FillArrays ─────────────────── v0.8.5
Installed TranscodingStreams ─────────── v0.9.5
Installed CORBITS ────────────────────── v1.0.1
#=#=# ##O#- # ######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ### 4.8%########### 16.4%###################### 30.8%################################### 49.1%################################################## 69.6%################################################################# 91.7%######################################################################## 100.0%
#=#=# ## 3.6%######## 12.1%################ 22.5%######################### 35.4%###################################### 53.1%##################################################### 74.2%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
e0ba718c + ExoplanetsSysSim v1.0.1
Updating `~/.julia/environments/v1.5/Manifest.toml`
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
a74b3585 + Blosc v0.6.0
631607c0 + CMake v1.2.0
d5fb7624 + CMakeWrapper v0.2.3
19bfd68b + CORBITS v1.0.1
336ed68f + CSV v0.5.26
324d7699 + CategoricalArrays v0.7.7
944b1d66 + CodecZlib v0.7.0
861a8166 + Combinatorics v1.0.0
34da2185 + Compat v2.2.0
e66e0078 + CompilerSupportLibraries_jll v0.3.0+0
9a962f9c + DataAPI v1.1.0
a93c6f00 + DataFrames v0.20.2
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
31c24e10 + Distributions v0.22.6
e0ba718c + ExoplanetsSysSim v1.0.1
5789e2e9 + FileIO v1.2.3
48062228 + FilePathsBase v0.7.0
1a297f60 + FillArrays v0.8.5
f67ccb44 + HDF5 v0.12.5
09f84164 + HypothesisTests v0.9.1
41ab1584 + InvertedIndices v1.0.0
82899510 + IteratorInterfaceExtensions v1.0.0
4138dd39 + JLD v0.9.2
033835bb + JLD2 v0.1.3
682c06a0 + JSON v0.21.0
1b4a561d + LegacyStrings v0.4.1
e1d29d7a + Missings v0.4.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
f27b6e38 + Polynomials v0.6.1
2dfb63ee + PooledArrays v0.5.3
1fd47b50 + QuadGK v2.3.1
3cdcf5f2 + RecipesBase v0.8.0
189a3867 + Reexport v0.2.0
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
f2b01f46 + Roots v0.8.4
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
3783bdb8 + TableTraits v1.0.0
bd369af6 + Tables v1.0.3
3bb67fe8 + TranscodingStreams v0.9.5
30578b45 + URIParser v0.4.0
ea10d353 + WeakRefStrings v0.6.2
83775a58 + Zlib_jll v1.2.11+8
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
9fa8497b + Future
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building CMake ───────────→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc ───────────→ `~/.julia/packages/Blosc/ZgcAM/deps/build.log`
Building HDF5 ────────────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building CORBITS ─────────→ `~/.julia/packages/CORBITS/2Gbsd/deps/build.log`
┌ Error: Error building `CORBITS`:
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/math_misc.cpp -o lib/math_misc.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/point3D.cpp -o lib/point3D.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/transit.cpp -o lib/transit.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/occultations.cpp -o lib/occultations.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat lib/c_interface.cpp -o lib/c_interface.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat data/koi_input.cpp -o data/koi_input.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat stat/stat_dist.cpp -o stat/stat_dist.o
│ g++ -shared -olibcorbits.so lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat base/corbits.cpp -o base/corbits.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o base/corbits.o -o base/corbits
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/kepler-11/Kepler-11.cpp -o examples/kepler-11/Kepler-11.o
│ examples/kepler-11/Kepler-11.cpp: In function 'void read_input()':
│ examples/kepler-11/Kepler-11.cpp:27:12: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
│ fscanf (fin, "%d", &n_planets);
│ ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
│ examples/kepler-11/Kepler-11.cpp:32:16: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
│ fscanf (fin, "%s %d", s, &use[i]);
│ ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/kepler-11/Kepler-11.o -o examples/kepler-11/kepler-11
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/period-dist/period_dist.cpp -o examples/period-dist/period_dist.o
│ examples/period-dist/period_dist.cpp: In function 'void print_results()':
│ examples/period-dist/period_dist.cpp:312:65: warning: format '%d' expects argument of type 'int', but argument 3 has type 'std::vector<pdf>::size_type {aka long unsigned int}' [-Wformat=]
│ fprintf (stderr, "Number of pairs of KOIs: %d\n", PDF.size());
│ ~~~~~~~~~~^
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/period-dist/period_dist.o -o examples/period-dist/period-dist
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/mhs-dist/mhs_dist.cpp -o examples/mhs-dist/mhs_dist.o
│ examples/mhs-dist/mhs_dist.cpp: In function 'void print_results()':
│ examples/mhs-dist/mhs_dist.cpp:256:63: warning: format '%d' expects argument of type 'int', but argument 3 has type 'std::vector<pdf>::size_type {aka long unsigned int}' [-Wformat=]
│ fprintf (stderr, "Number of pairs of KOIs: %d\n", PDF.size());
│ ~~~~~~~~~~^
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/mhs-dist/mhs_dist.o -o examples/mhs-dist/mhs-dist
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/solar-system/solsys.cpp -o examples/solar-system/solsys.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/solar-system/solsys.o -o examples/solar-system/solar-system
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/case-trans/case_trans.cpp -o examples/case-trans/case_trans.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/case-trans/case_trans.o -o examples/case-trans/case-trans
│ g++ -c -fPIC -Wall -O2 -I lib -I data -I stat examples/koi-table/koi_table.cpp -o examples/koi-table/koi_table.o
│ g++ -Wall -O2 -I lib -I data -I stat lib/math_misc.o lib/point3D.o lib/transit.o lib/occultations.o lib/c_interface.o data/koi_input.o stat/stat_dist.o examples/koi-table/koi_table.o -o examples/koi-table/koi-table
│ data/grab.sh
│ sed: can't read data/koi-data.txt: No such file or directory
│ Makefile:203: recipe for target 'data/koi-data-edit.txt' failed
│ make: *** [data/koi-data-edit.txt] Error 2
│ ERROR: LoadError: failed process: Process(`make`, ProcessExited(2)) [2]
│
│ Stacktrace:
│ [1] pipeline_error at ./process.jl:525 [inlined]
│ [2] run(::Cmd; wait::Bool) at ./process.jl:440
│ [3] run(::Cmd) at ./process.jl:438
│ [4] top-level scope at /home/pkgeval/.julia/packages/CORBITS/2Gbsd/deps/build.jl:2
│ [5] include(::String) at ./client.jl:441
│ [6] top-level scope at none:5
│ in expression starting at /home/pkgeval/.julia/packages/CORBITS/2Gbsd/deps/build.jl:2
└ @ Pkg.Operations /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:912
Building ExoplanetsSysSim → `~/.julia/packages/ExoplanetsSysSim/KrNHq/deps/build.log`
Testing ExoplanetsSysSim
Status `/tmp/jl_4yiIPq/Project.toml`
19bfd68b CORBITS v1.0.1
336ed68f CSV v0.5.26
861a8166 Combinatorics v1.0.0
34da2185 Compat v2.2.0
a93c6f00 DataFrames v0.20.2
31c24e10 Distributions v0.22.6
e0ba718c ExoplanetsSysSim v1.0.1
5789e2e9 FileIO v1.2.3
09f84164 HypothesisTests v0.9.1
4138dd39 JLD v0.9.2
033835bb JLD2 v0.1.3
90014a1f PDMats v0.9.12
276daf66 SpecialFunctions v0.10.0
4c63d2b9 StatsFuns v0.9.4
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
44cfe95a Pkg
10745b16 Statistics
Status `/tmp/jl_4yiIPq/Manifest.toml`
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
a74b3585 Blosc v0.6.0
631607c0 CMake v1.2.0
d5fb7624 CMakeWrapper v0.2.3
19bfd68b CORBITS v1.0.1
336ed68f CSV v0.5.26
324d7699 CategoricalArrays v0.7.7
944b1d66 CodecZlib v0.7.0
861a8166 Combinatorics v1.0.0
34da2185 Compat v2.2.0
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
9a962f9c DataAPI v1.1.0
a93c6f00 DataFrames v0.20.2
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
31c24e10 Distributions v0.22.6
e0ba718c ExoplanetsSysSim v1.0.1
5789e2e9 FileIO v1.2.3
48062228 FilePathsBase v0.7.0
1a297f60 FillArrays v0.8.5
f67ccb44 HDF5 v0.12.5
09f84164 HypothesisTests v0.9.1
41ab1584 InvertedIndices v1.0.0
82899510 IteratorInterfaceExtensions v1.0.0
4138dd39 JLD v0.9.2
033835bb JLD2 v0.1.3
682c06a0 JSON v0.21.0
1b4a561d LegacyStrings v0.4.1
e1d29d7a Missings v0.4.3
4536629a OpenBLAS_jll v0.3.7+7
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
f27b6e38 Polynomials v0.6.1
2dfb63ee PooledArrays v0.5.3
1fd47b50 QuadGK v2.3.1
3cdcf5f2 RecipesBase v0.8.0
189a3867 Reexport v0.2.0
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
f2b01f46 Roots v0.8.4
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v1.0.3
3bb67fe8 TranscodingStreams v0.9.5
30578b45 URIParser v0.4.0
ea10d353 WeakRefStrings v0.6.2
83775a58 Zlib_jll v1.2.11+8
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
9fa8497b Future
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
ERROR: LoadError: ArgumentError: Package Test not found in current path:
- Run `import Pkg; Pkg.add("Test")` to install the Test package.
Stacktrace:
[1] require(::Module, ::Symbol) at ./loading.jl:892
[2] include(::String) at ./client.jl:441
[3] top-level scope at none:6
in expression starting at /home/pkgeval/.julia/packages/ExoplanetsSysSim/KrNHq/test/runtests.jl:1
ERROR: Package ExoplanetsSysSim errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1523
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13