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1.5.0-DEV-7206b56e94.log
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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Reexport ─────────── v0.2.0
Installed CMakeWrapper ─────── v0.2.3
Installed Parameters ───────── v0.12.0
Installed BinDeps ──────────── v1.0.0
Installed Blosc ────────────── v0.6.0
Installed CMake ────────────── v1.2.0
Installed EMIRT ────────────── v0.7.0
Installed BinaryProvider ───── v0.5.8
Installed URIParser ────────── v0.4.0
Installed FixedPointNumbers ── v0.5.3
Installed ColorTypes ───────── v0.7.5
Installed OrderedCollections ─ v1.1.0
Installed HDF5 ─────────────── v0.12.5
Installed FileIO ───────────── v1.2.3
Installed Colors ───────────── v0.9.5
Updating `~/.julia/environments/v1.5/Project.toml`
8acf8dda + EMIRT v0.7.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
a74b3585 + Blosc v0.6.0
631607c0 + CMake v1.2.0
d5fb7624 + CMakeWrapper v0.2.3
3da002f7 + ColorTypes v0.7.5
5ae59095 + Colors v0.9.5
8acf8dda + EMIRT v0.7.0
5789e2e9 + FileIO v1.2.3
53c48c17 + FixedPointNumbers v0.5.3
f67ccb44 + HDF5 v0.12.5
bac558e1 + OrderedCollections v1.1.0
d96e819e + Parameters v0.12.0
189a3867 + Reexport v0.2.0
30578b45 + URIParser v0.4.0
2a0f44e3 + Base64
ade2ca70 + Dates
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building CMake → `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc → `~/.julia/packages/Blosc/ZgcAM/deps/build.log`
Building HDF5 ─→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Testing EMIRT
Status `/tmp/jl_TEqkEe/Project.toml`
5ae59095 Colors v0.9.5
8acf8dda EMIRT v0.7.0
5789e2e9 FileIO v1.2.3
53c48c17 FixedPointNumbers v0.5.3
f67ccb44 HDF5 v0.12.5
8ba89e20 Distributed
8dfed614 Test
Status `/tmp/jl_TEqkEe/Manifest.toml`
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
a74b3585 Blosc v0.6.0
631607c0 CMake v1.2.0
d5fb7624 CMakeWrapper v0.2.3
3da002f7 ColorTypes v0.7.5
5ae59095 Colors v0.9.5
8acf8dda EMIRT v0.7.0
5789e2e9 FileIO v1.2.3
53c48c17 FixedPointNumbers v0.5.3
f67ccb44 HDF5 v0.12.5
bac558e1 OrderedCollections v1.1.0
d96e819e Parameters v0.12.0
189a3867 Reexport v0.2.0
30578b45 URIParser v0.4.0
2a0f44e3 Base64
ade2ca70 Dates
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
Test Summary: | Pass Total
test IO | 6 6
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/aff.h5 ......done :)
reading file: /home/pkgeval/.julia/packages/EMIRT/C3RK2/test/../assets/lbl.h5 ......done :)
judec = Dict{Symbol,Float32}(:VIFSs => 0.65209204,:ri => 0.9090551,:VIm => 0.013707907,:VIFS => 0.78002024,:rem => 0.00040634486,:VI => 0.2534153,:res => 0.09053859,:rfm => 0.99934644,:rf => 0.9318045,:VIS => -0.2534153,:VIFSm => 0.9703931,:re => 0.09094494,:rfs => 0.87281424,:ris => 0.2877325,:VIs => 0.23970748,:rim => 0.6213226)
0.009369 seconds (25.64 k allocations: 411.250 KiB)
ecd = Dict{Symbol,Float32}(:VIFSs => 1.0000002,:ri => 1.0,:VIm => 0.0,:VIFS => 1.0000002,:rem => 0.0,:VI => -1.7881393f-7,:res => 0.0,:rfm => 1.0,:rf => 1.0,:VIS => 1.7881393f-7,:VIFSm => 1.0000002,:re => 0.0,:rfs => 1.0,:ris => 0.28813884,:VIs => 0.0,:rim => 0.71186113)
0.605093 seconds (1.21 M allocations: 24.655 MiB)
ecd = Dict{Symbol,Float32}(:VIFSs => 0.045672007,:ri => 0.28817847,:VIm => 0.0,:VIFS => 0.08735364,:rem => 0.0,:VI => 9.672697,:res => 0.7118215,:rfm => 1.0,:rf => 0.00011138609,:VIS => -9.672697,:VIFSm => 0.99981064,:re => 0.7118215,:rfs => 5.569615f-5,:ris => 0.28813884,:VIs => 9.672756,:rim => 3.9647926f-5)
Test Summary: | Pass Total
test evaluate | 2 2
test segmentation downsampling
create random segmentation for tests
test creating fake mst ...
test relabel_seg ....
1.534406 seconds (156.80 k allocations: 138.300 MiB, 3.56% gc time)
test segid1N! ...
test modified serial version ...
6.315124 seconds (186.46 k allocations: 567.603 MiB, 4.09% gc time)
test modified serial version ...
5.922751 seconds (39 allocations: 558.002 MiB, 1.56% gc time)
test mask singletons ...
test removing singletons by masking ...
1.261706 seconds (17.08 M allocations: 327.160 MiB)
2.222386 seconds (17.05 M allocations: 325.293 MiB, 16.56% gc time)
Test Summary: | Pass Total
test segmentations | 2 2
transform affinitymap to edge list...
0.269098 seconds (2 allocations: 4.383 MiB)
0.291663 seconds (48 allocations: 16.385 MiB)
segment affinity map using connectivity analysis ...
0.052746 seconds (20 allocations: 6.032 MiB)
transform to uniform distribution ...
map to uniform distribution...get the permutation by sorting...... 0.591142 seconds (109.32 k allocations: 14.815 MiB)
done :)
done!
0.620679 seconds (109.39 k allocations: 35.818 MiB)
exchange x and z axis of affinity map...
exchange x and z of affinity map
0.067407 seconds (64.99 k allocations: 7.437 MiB)
Test Summary: |
test affinitymap | No tests
Testing EMIRT tests passed