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1.5.0-DEV-7206b56e94.log
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Julia Version 1.5.0-DEV.485
Commit 7206b56e94 (2020-03-18 17:25 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ──────────── v0.3.1
Installed PDMats ─────────────────────── v0.9.12
Installed LaTeXStrings ───────────────── v1.1.0
Installed Parameters ─────────────────── v0.12.0
Installed Conda ──────────────────────── v1.4.1
Installed TextWrap ───────────────────── v1.0.1
Installed Distributions ──────────────── v0.22.6
Installed VersionParsing ─────────────── v1.2.0
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed FixedPointNumbers ──────────── v0.8.0
Installed CMake ──────────────────────── v1.2.0
Installed BinDeps ────────────────────── v1.0.0
Installed HDF5 ───────────────────────── v0.12.5
Installed DCEMRI ─────────────────────── v0.2.2
Installed QuadGK ─────────────────────── v2.3.1
Installed DiffResults ────────────────── v1.0.2
Installed CodecZlib ──────────────────── v0.6.0
Installed PyPlot ─────────────────────── v2.8.2
Installed StatsFuns ──────────────────── v0.9.4
Installed OptimBase ──────────────────── v2.0.0
Installed CMakeWrapper ───────────────── v0.2.3
Installed CommonSubexpressions ───────── v0.2.0
Installed StaticArrays ───────────────── v0.12.1
Installed StatsBase ──────────────────── v0.32.2
Installed JSON ───────────────────────── v0.21.0
Installed ColorTypes ─────────────────── v0.10.0
Installed DataStructures ─────────────── v0.17.10
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed NaNMath ────────────────────── v0.3.3
Installed CompilerSupportLibraries_jll ─ v0.3.0+0
Installed Reexport ───────────────────── v0.2.0
Installed LsqFit ─────────────────────── v0.10.0
Installed Calculus ───────────────────── v0.5.1
Installed ArgParse ───────────────────── v1.1.0
Installed Rmath ──────────────────────── v0.6.1
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed Parsers ────────────────────── v0.3.12
Installed SpecialFunctions ───────────── v0.10.0
Installed DataAPI ────────────────────── v1.1.0
Installed BinaryProvider ─────────────── v0.5.8
Installed Missings ───────────────────── v0.4.3
Installed MAT ────────────────────────── v0.7.0
Installed Requires ───────────────────── v1.0.1
Installed FiniteDiff ─────────────────── v2.2.1
Installed Blosc ──────────────────────── v0.6.0
Installed BufferedStreams ────────────── v1.0.0
Installed MacroTools ─────────────────── v0.5.4
Installed ArrayInterface ─────────────── v2.5.1
Installed URIParser ──────────────────── v0.4.0
Installed Colors ─────────────────────── v0.12.0
Installed Arpack ─────────────────────── v0.4.0
Installed ForwardDiff ────────────────── v0.10.9
Installed PyCall ─────────────────────── v1.91.4
Installed DiffRules ──────────────────── v1.0.1
Installed Compat ─────────────────────── v2.2.0
Installed OrderedCollections ─────────── v1.1.0
Installed FillArrays ─────────────────── v0.8.5
Installed TranscodingStreams ─────────── v0.9.5
Installed NLSolversBase ──────────────── v7.6.1
#=#=# ######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# # 1.8%#### 6.4%######### 13.7%################ 23.3%######################## 34.1%################################### 48.9%################################################ 67.2%############################################################## 87.4%######################################################################## 100.0%
#=#=# ## 3.1%### 4.8%############## 19.9%######################## 33.6%####################################### 55.4%############################################################ 84.1%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
2b3899e7 + DCEMRI v0.2.2
Updating `~/.julia/environments/v1.5/Manifest.toml`
c7e460c6 + ArgParse v1.1.0
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
4fba245c + ArrayInterface v2.5.1
9e28174c + BinDeps v1.0.0
b99e7846 + BinaryProvider v0.5.8
a74b3585 + Blosc v0.6.0
e1450e63 + BufferedStreams v1.0.0
631607c0 + CMake v1.2.0
d5fb7624 + CMakeWrapper v0.2.3
49dc2e85 + Calculus v0.5.1
944b1d66 + CodecZlib v0.6.0
3da002f7 + ColorTypes v0.10.0
5ae59095 + Colors v0.12.0
bbf7d656 + CommonSubexpressions v0.2.0
34da2185 + Compat v2.2.0
e66e0078 + CompilerSupportLibraries_jll v0.3.0+0
8f4d0f93 + Conda v1.4.1
2b3899e7 + DCEMRI v0.2.2
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
163ba53b + DiffResults v1.0.2
b552c78f + DiffRules v1.0.1
31c24e10 + Distributions v0.22.6
1a297f60 + FillArrays v0.8.5
6a86dc24 + FiniteDiff v2.2.1
53c48c17 + FixedPointNumbers v0.8.0
f6369f11 + ForwardDiff v0.10.9
f67ccb44 + HDF5 v0.12.5
682c06a0 + JSON v0.21.0
b964fa9f + LaTeXStrings v1.1.0
2fda8390 + LsqFit v0.10.0
23992714 + MAT v0.7.0
1914dd2f + MacroTools v0.5.4
e1d29d7a + Missings v0.4.3
d41bc354 + NLSolversBase v7.6.1
77ba4419 + NaNMath v0.3.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
87e2bd06 + OptimBase v2.0.0
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
d96e819e + Parameters v0.12.0
69de0a69 + Parsers v0.3.12
438e738f + PyCall v1.91.4
d330b81b + PyPlot v2.8.2
1fd47b50 + QuadGK v2.3.1
189a3867 + Reexport v0.2.0
ae029012 + Requires v1.0.1
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
90137ffa + StaticArrays v0.12.1
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
b718987f + TextWrap v1.0.1
3bb67fe8 + TranscodingStreams v0.9.5
30578b45 + URIParser v0.4.0
81def892 + VersionParsing v1.2.0
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
1a1011a3 + SharedArrays
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Building Conda ────→ `~/.julia/packages/Conda/3rPhK/deps/build.log`
Building CMake ────→ `~/.julia/packages/CMake/ULbyn/deps/build.log`
Building Blosc ────→ `~/.julia/packages/Blosc/ZgcAM/deps/build.log`
Building HDF5 ─────→ `~/.julia/packages/HDF5/Zh9on/deps/build.log`
Building CodecZlib → `~/.julia/packages/CodecZlib/5t9zO/deps/build.log`
Building PyCall ───→ `~/.julia/packages/PyCall/zqDXB/deps/build.log`
Testing DCEMRI
Status `/tmp/jl_RB00N2/Project.toml`
c7e460c6 ArgParse v1.1.0
49dc2e85 Calculus v0.5.1
2b3899e7 DCEMRI v0.2.2
2fda8390 LsqFit v0.10.0
23992714 MAT v0.7.0
d330b81b PyPlot v2.8.2
8ba89e20 Distributed
37e2e46d LinearAlgebra
44cfe95a Pkg
de0858da Printf
9a3f8284 Random
10745b16 Statistics
8dfed614 Test
Status `/tmp/jl_RB00N2/Manifest.toml`
c7e460c6 ArgParse v1.1.0
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
4fba245c ArrayInterface v2.5.1
9e28174c BinDeps v1.0.0
b99e7846 BinaryProvider v0.5.8
a74b3585 Blosc v0.6.0
e1450e63 BufferedStreams v1.0.0
631607c0 CMake v1.2.0
d5fb7624 CMakeWrapper v0.2.3
49dc2e85 Calculus v0.5.1
944b1d66 CodecZlib v0.6.0
3da002f7 ColorTypes v0.10.0
5ae59095 Colors v0.12.0
bbf7d656 CommonSubexpressions v0.2.0
34da2185 Compat v2.2.0
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
8f4d0f93 Conda v1.4.1
2b3899e7 DCEMRI v0.2.2
9a962f9c DataAPI v1.1.0
864edb3b DataStructures v0.17.10
163ba53b DiffResults v1.0.2
b552c78f DiffRules v1.0.1
31c24e10 Distributions v0.22.6
1a297f60 FillArrays v0.8.5
6a86dc24 FiniteDiff v2.2.1
53c48c17 FixedPointNumbers v0.8.0
f6369f11 ForwardDiff v0.10.9
f67ccb44 HDF5 v0.12.5
682c06a0 JSON v0.21.0
b964fa9f LaTeXStrings v1.1.0
2fda8390 LsqFit v0.10.0
23992714 MAT v0.7.0
1914dd2f MacroTools v0.5.4
e1d29d7a Missings v0.4.3
d41bc354 NLSolversBase v7.6.1
77ba4419 NaNMath v0.3.3
4536629a OpenBLAS_jll v0.3.7+7
efe28fd5 OpenSpecFun_jll v0.5.3+3
87e2bd06 OptimBase v2.0.0
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
d96e819e Parameters v0.12.0
69de0a69 Parsers v0.3.12
438e738f PyCall v1.91.4
d330b81b PyPlot v2.8.2
1fd47b50 QuadGK v2.3.1
189a3867 Reexport v0.2.0
ae029012 Requires v1.0.1
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
b718987f TextWrap v1.0.1
3bb67fe8 TranscodingStreams v0.9.5
30578b45 URIParser v0.4.0
81def892 VersionParsing v1.2.0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
1a1011a3 SharedArrays
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
┌ Warning: Pkg.installed() is deprecated
└ @ Pkg /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Pkg.jl:530
Producing noisy version of /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q4/qiba4.mat
Noisy data saved to /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q4/qiba4noisy.mat
Running analysis of noise-free QIBA v4 data ...
running models
found multi-flip data
fitting R1 relaxation rate to multi-flip data
running 6 x 90 points on one CPU core
processed 90 voxels in 5.1 s (17.6 vox/s)
computing signal enhancement ratios
converting DCE signal to effective R1
converting effective R1 to tracer tissue concentration Ct
fitting DCE data
attempting Extended Tofts-Kety model
running 661 x 90 points on one CPU core
processed 90 voxels in 1.0 s (89.3 vox/s)
Kt
RMSE: 7.213202797157536 %
errmax: 23.49531975365325
CCC: 0.9998008500479387
ve
RMSE: 19.12662161880501 %
errmax: 99.99999999999996
CCC: 0.8904282640813683
vp
RMSE: 24.19610159024765 %
errmax: 92.5277866472779 %
CCC: 0.9999199032935647
Running analysis of noisy QIBA v4 data ...
running models
found multi-flip data
fitting R1 relaxation rate to multi-flip data
running 6 x 9000 points on one CPU core
processed 9000 voxels in 1.3 s (6989.9 vox/s)
computing signal enhancement ratios
converting DCE signal to effective R1
converting effective R1 to tracer tissue concentration Ct
fitting DCE data
attempting Extended Tofts-Kety model
running 661 x 9000 points on one CPU core
processed 9000 voxels in 53.7 s (167.7 vox/s)
Kt
RMSE: 36.36650876239022 %
errmax: 100.0
CCC: 0.9733228741684535
ve
RMSE: 40.99878314052909 %
errmax: 100.0
CCC: 0.6980831963907628
vp
RMSE: 49.166015065139135 %
errmax: 100.0 %
CCC: 0.9724530627423672
Validation complete. If saved, results can be found in /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q4.
Test Summary: | Pass Total
QIBA v4 Extended Tofts Phantom | 6 6
Producing noisy version of /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q6/qiba6.mat
Noisy data saved to /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q6/qiba6noisy.mat
Running analysis of noise-free QIBA v6 data ...
running models
found existing R1 map
computing signal enhancement ratios
converting DCE signal to effective R1
converting effective R1 to tracer tissue concentration Ct
fitting DCE data
attempting Standard Tofts-Kety model
running 1321 x 30 points on one CPU core
processed 30 voxels in 0.5 s (55.5 vox/s)
Kt
RMSE: 0.06905821926103418 %
errmax: 0.12117793868986793
CCC: 0.9999992183734602
ve
RMSE: 0.08534910688439756 %
errmax: 0.23374109636993026
CCC: 0.9999993737019014
Running analysis of noisy QIBA v6 data ...
running models
found existing R1 map
computing signal enhancement ratios
converting DCE signal to effective R1
converting effective R1 to tracer tissue concentration Ct
fitting DCE data
attempting Standard Tofts-Kety model
running 1321 x 3000 points on one CPU core
processed 3000 voxels in 38.1 s (78.8 vox/s)
Kt
RMSE: 42.983491509539554 %
errmax: 100.0
CCC: 0.8743036234492968
ve
RMSE: 52.291815686243545 %
errmax: 100.0
CCC: 0.8612999061654639
Validation complete. If saved, results can be found in /home/pkgeval/.julia/packages/DCEMRI/IqKLJ/src/../test/q6.
Test Summary: | Pass Total
QIBA v6 Standard Tofts Phantom | 4 4
Testing DCEMRI tests passed