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1.5.0-DEV-7f28d91b70.log
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Julia Version 1.5.0-DEV.483
Commit 7f28d91b70 (2020-03-18 17:21 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed Trajectories ───────────────── v0.1.0
Installed OpenBLAS_jll ───────────────── v0.3.7+7
Installed QuadGK ─────────────────────── v2.3.1
Installed FillArrays ─────────────────── v0.8.5
Installed StaticArrays ───────────────── v0.12.1
Installed StatsBase ──────────────────── v0.32.2
Installed Bridge ─────────────────────── v0.11.0
Installed Distributions ──────────────── v0.22.6
Installed FixedPointNumbers ──────────── v0.7.1
Installed Rmath_jll ──────────────────── v0.2.2+0
Installed OrderedCollections ─────────── v1.1.0
Installed SortingAlgorithms ──────────── v0.3.1
Installed RecipesBase ────────────────── v0.7.0
Installed SpecialFunctions ───────────── v0.10.0
Installed IteratorInterfaceExtensions ── v1.0.0
Installed Arpack_jll ─────────────────── v3.5.0+2
Installed DataStructures ─────────────── v0.17.10
Installed DataAPI ────────────────────── v1.1.0
Installed CompilerSupportLibraries_jll ─ v0.3.0+0
Installed PDMats ─────────────────────── v0.9.12
Installed Arpack ─────────────────────── v0.4.0
Installed TableTraits ────────────────── v1.0.0
Installed StatsFuns ──────────────────── v0.9.4
Installed ColorTypes ─────────────────── v0.9.1
Installed Polynomials ────────────────── v0.6.1
Installed Tables ─────────────────────── v0.2.11
Installed OpenSpecFun_jll ────────────── v0.5.3+3
Installed DataValueInterfaces ────────── v1.0.0
Installed Reexport ───────────────────── v0.2.0
Installed Rmath ──────────────────────── v0.6.1
Installed Missings ───────────────────── v0.4.3
Installed Colors ─────────────────────── v0.11.2
#=#=# 0.5%### 5.1%####### 10.7%############# 18.4%################### 27.7%######################## 33.9%################################### 48.8%################################################ 67.3%################################################################# 90.5%######################################################################## 100.0%
#=#=# ################################################# 69.0%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
#=#=# ## 3.6%####### 11.0%############### 21.0%######################## 34.3%##################################### 51.5%################################################### 71.6%###################################################################### 97.4%######################################################################## 100.0%
#=#=# ######################################################################## 100.0%
Updating `~/.julia/environments/v1.5/Project.toml`
2d3116d5 + Bridge v0.11.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
7d9fca2a + Arpack v0.4.0
68821587 + Arpack_jll v3.5.0+2
2d3116d5 + Bridge v0.11.0
3da002f7 + ColorTypes v0.9.1
5ae59095 + Colors v0.11.2
e66e0078 + CompilerSupportLibraries_jll v0.3.0+0
9a962f9c + DataAPI v1.1.0
864edb3b + DataStructures v0.17.10
e2d170a0 + DataValueInterfaces v1.0.0
31c24e10 + Distributions v0.22.6
1a297f60 + FillArrays v0.8.5
53c48c17 + FixedPointNumbers v0.7.1
82899510 + IteratorInterfaceExtensions v1.0.0
e1d29d7a + Missings v0.4.3
4536629a + OpenBLAS_jll v0.3.7+7
efe28fd5 + OpenSpecFun_jll v0.5.3+3
bac558e1 + OrderedCollections v1.1.0
90014a1f + PDMats v0.9.12
f27b6e38 + Polynomials v0.6.1
1fd47b50 + QuadGK v2.3.1
3cdcf5f2 + RecipesBase v0.7.0
189a3867 + Reexport v0.2.0
79098fc4 + Rmath v0.6.1
f50d1b31 + Rmath_jll v0.2.2+0
a2af1166 + SortingAlgorithms v0.3.1
276daf66 + SpecialFunctions v0.10.0
90137ffa + StaticArrays v0.12.1
2913bbd2 + StatsBase v0.32.2
4c63d2b9 + StatsFuns v0.9.4
3783bdb8 + TableTraits v1.0.0
bd369af6 + Tables v0.2.11
2c80a279 + Trajectories v0.1.0
2a0f44e3 + Base64
ade2ca70 + Dates
8bb1440f + DelimitedFiles
8ba89e20 + Distributed
b77e0a4c + InteractiveUtils
76f85450 + LibGit2
8f399da3 + Libdl
37e2e46d + LinearAlgebra
56ddb016 + Logging
d6f4376e + Markdown
a63ad114 + Mmap
44cfe95a + Pkg
de0858da + Printf
3fa0cd96 + REPL
9a3f8284 + Random
ea8e919c + SHA
9e88b42a + Serialization
6462fe0b + Sockets
2f01184e + SparseArrays
10745b16 + Statistics
4607b0f0 + SuiteSparse
8dfed614 + Test
cf7118a7 + UUIDs
4ec0a83e + Unicode
Testing Bridge
Status `/tmp/jl_qTLsW9/Project.toml`
2d3116d5 Bridge v0.11.0
5ae59095 Colors v0.11.2
31c24e10 Distributions v0.22.6
e30172f5 Documenter v0.24.6
f27b6e38 Polynomials v0.6.1
3cdcf5f2 RecipesBase v0.7.0
90137ffa StaticArrays v0.12.1
2c80a279 Trajectories v0.1.0
8bb1440f DelimitedFiles
37e2e46d LinearAlgebra
9a3f8284 Random
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
Status `/tmp/jl_qTLsW9/Manifest.toml`
7d9fca2a Arpack v0.4.0
68821587 Arpack_jll v3.5.0+2
2d3116d5 Bridge v0.11.0
3da002f7 ColorTypes v0.9.1
5ae59095 Colors v0.11.2
e66e0078 CompilerSupportLibraries_jll v0.3.0+0
9a962f9c DataAPI v1.1.0
864edb3b DataStructures v0.17.10
e2d170a0 DataValueInterfaces v1.0.0
31c24e10 Distributions v0.22.6
ffbed154 DocStringExtensions v0.8.1
e30172f5 Documenter v0.24.6
1a297f60 FillArrays v0.8.5
53c48c17 FixedPointNumbers v0.7.1
82899510 IteratorInterfaceExtensions v1.0.0
682c06a0 JSON v0.21.0
e1d29d7a Missings v0.4.3
4536629a OpenBLAS_jll v0.3.7+7
efe28fd5 OpenSpecFun_jll v0.5.3+3
bac558e1 OrderedCollections v1.1.0
90014a1f PDMats v0.9.12
69de0a69 Parsers v0.3.12
f27b6e38 Polynomials v0.6.1
1fd47b50 QuadGK v2.3.1
3cdcf5f2 RecipesBase v0.7.0
189a3867 Reexport v0.2.0
79098fc4 Rmath v0.6.1
f50d1b31 Rmath_jll v0.2.2+0
a2af1166 SortingAlgorithms v0.3.1
276daf66 SpecialFunctions v0.10.0
90137ffa StaticArrays v0.12.1
2913bbd2 StatsBase v0.32.2
4c63d2b9 StatsFuns v0.9.4
3783bdb8 TableTraits v1.0.0
bd369af6 Tables v0.2.11
2c80a279 Trajectories v0.1.0
2a0f44e3 Base64
ade2ca70 Dates
8bb1440f DelimitedFiles
8ba89e20 Distributed
b77e0a4c InteractiveUtils
76f85450 LibGit2
8f399da3 Libdl
37e2e46d LinearAlgebra
56ddb016 Logging
d6f4376e Markdown
a63ad114 Mmap
44cfe95a Pkg
de0858da Printf
3fa0cd96 REPL
9a3f8284 Random
ea8e919c SHA
9e88b42a Serialization
6462fe0b Sockets
2f01184e SparseArrays
10745b16 Statistics
4607b0f0 SuiteSparse
8dfed614 Test
cf7118a7 UUIDs
4ec0a83e Unicode
[ Info: SetupBuildDirectory: setting up build directory.
[ Info: Doctest: running doctests.
┌ Error: doctest failure in src/manual.md:56-64
│
│ ```jldoctest OrnsteinUhlenbeck
│ using Random
│ Random.seed!(1)
│ W = sample(0:0.1:1, Wiener())
│
│ # output
│
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.0, 0.0940107, 0.214935, 0.0259463, 0.0226432, -0.24268, -0.144298, 0.581472, -0.135443, 0.0321464, 0.168574])
│ ```
│
│ Subexpression:
│
│ using Random
│ Random.seed!(1)
│ W = sample(0:0.1:1, Wiener())
│
│ Evaluated output:
│
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.0, 0.09401071521329729, 0.21493493784156792, 0.025946322371157515, 0.02264324599398086, -0.24268034179751272, -0.14429829824167634, 0.5814721971028423, -0.13544345434561966, 0.032146375871416805, 0.16857384138370848])
│
│ Expected output:
│
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.0, 0.0940107, 0.214935, 0.0259463, 0.0226432, -0.24268, -0.144298, 0.581472, -0.135443, 0.0321464, 0.168574])
│
│ diff =
│ Warning: Diff output requires color.
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.0, 0.0940107, 0.214935, 0.0259463, 0.0226432, -0.24268, -0.144298, 0.581472, -0.135443, 0.0321464, 0.168574])0.09401071521329729, 0.21493493784156792, 0.025946322371157515, 0.02264324599398086, -0.24268034179751272, -0.14429829824167634, 0.5814721971028423, -0.13544345434561966, 0.032146375871416805, 0.16857384138370848])
└ @ Documenter.DocTests ~/.julia/packages/Documenter/RrEcY/src/DocTests.jl:369
┌ Error: doctest failure in src/manual.md:72-78
│
│ ```jldoctest OrnsteinUhlenbeck
│ X = Bridge.solve(Euler(), 0.1, W, OrnsteinUhlenbeck(20.0, 1.0));
│
│ # output
│
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.1, -0.00598928, 0.126914, -0.315902, 0.312599, -0.577923, 0.676305, 0.0494658, -0.766381, 0.933971, -0.797544])
│ ```
│
│ Subexpression:
│
│ X = Bridge.solve(Euler(), 0.1, W, OrnsteinUhlenbeck(20.0, 1.0));
│
│ Evaluated output:
│
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.1, -0.005989284786702714, 0.12691350741497334, -0.31590212288538366, 0.31259904650820713, -0.5779226342997006, 0.6763046778555367, 0.04946581748898227, -0.7663814689374443, 0.9339712991544805, -0.7975438336421886])
│
│ Expected output:
│
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.1, -0.00598928, 0.126914, -0.315902, 0.312599, -0.577923, 0.676305, 0.0494658, -0.766381, 0.933971, -0.797544])
│
│ diff =
│ Warning: Diff output requires color.
│ SamplePath{Float64}([0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0], [0.1, -0.00598928, 0.126914, -0.315902, 0.312599, -0.577923, 0.676305, 0.0494658, -0.766381, 0.933971, -0.797544])-0.005989284786702714, 0.12691350741497334, -0.31590212288538366, 0.31259904650820713, -0.5779226342997006, 0.6763046778555367, 0.04946581748898227, -0.7663814689374443, 0.9339712991544805, -0.7975438336421886])
└ @ Documenter.DocTests ~/.julia/packages/Documenter/RrEcY/src/DocTests.jl:369
[ Info: ExpandTemplates: expanding markdown templates.
[ Info: CrossReferences: building cross-references.
[ Info: CheckDocument: running document checks.
┌ Warning: 2 docstrings potentially missing:
│
│ Bridge.StratonovichEuler
│ Bridge.@unroll1 :: Tuple{Any}
└ @ Documenter.DocChecks ~/.julia/packages/Documenter/RrEcY/src/DocChecks.jl:63
[ Info: Populate: populating indices.
[ Info: RenderDocument: rendering document.
[ Info: HTMLWriter: rendering HTML pages.
┌ Warning: Documenter could not auto-detect the building environment Skipping deployment.
└ @ Documenter ~/.julia/packages/Documenter/RrEcY/src/deployconfig.jl:41
Test Summary: | Pass Total
Lyap | 1 1
Any["BridgeProp", "ScaledBridgeProp", "GuidedProp", "DHBridgeProp", "PBridgeProp", "GuidedProp", "GuidedProposal"]
Any[0.523035337453923, 0.30702388508905654, 2.264376851383672, 1.3251585830439814, 1.3314232283235428, 1.9222402142337305, 1.410208649040217]
WARNING: using Models.Lorenz in module Main conflicts with an existing identifier.
LP = log(pdf(Normal((μt[1])[1] + (Lt[1] * x0)[1], (Mt[1])[1] ^ -0.5), v[1])) = -0.9929361410325926
Test Summary: | Pass Total
MCMC | 1 1
(LP, LP2) = (-0.9929361410325926, -0.9836851621480305)
Test Summary: |
MCMC | No tests
0.398154 seconds (139.22 k allocations: 42.509 MiB, 8.65% gc time)
11×3 Array{Any,2}:
"Euler" 5.25803 1.02603
"Euler + Trapez" 11.216 1.04123
"MDGP+Left" 4.04968 0.988145
"MDGP+Trapez" 2.23015 1.00793
"TCSGP" 0.718819 1.00233
"TCSGP + Trapez" 2.48409 1.00843
"TCSGPLL" 2.46148 1.00826
"TCSGPLL + Trapez" 2.096 1.00666
"TCSGP + Inno + Update" 0.271631 1.00089
"TCSGPLL + Inno Mix" 2.03459 1.00629
"MDGP + Trapez + Inno" 1.12773 0.996436
Method rel error mean
Remark: Change of measure is successfull if mean is close to 1
┌ Warning: Assignment to `x` in soft scope is ambiguous because a global variable by the same name exists: `x` will be treated as a new local. Disambiguate by using `local x` to suppress this warning or `global x` to assign to the existing global variable.
└ @ ~/.julia/packages/Bridge/UCW97/test/gaussian.jl:21
┌ Warning: Assignment to `Σ` in soft scope is ambiguous because a global variable by the same name exists: `Σ` will be treated as a new local. Disambiguate by using `local Σ` to suppress this warning or `global Σ` to assign to the existing global variable.
└ @ ~/.julia/packages/Bridge/UCW97/test/gaussian.jl:23
┌ Warning: Assignment to `p` in soft scope is ambiguous because a global variable by the same name exists: `p` will be treated as a new local. Disambiguate by using `local p` to suppress this warning or `global p` to assign to the existing global variable.
└ @ ~/.julia/packages/Bridge/UCW97/test/gaussian.jl:24
┌ Warning: Assignment to `x` in soft scope is ambiguous because a global variable by the same name exists: `x` will be treated as a new local. Disambiguate by using `local x` to suppress this warning or `global x` to assign to the existing global variable.
└ @ ~/.julia/packages/Bridge/UCW97/test/gaussian.jl:34
┌ Warning: Assignment to `Σ` in soft scope is ambiguous because a global variable by the same name exists: `Σ` will be treated as a new local. Disambiguate by using `local Σ` to suppress this warning or `global Σ` to assign to the existing global variable.
└ @ ~/.julia/packages/Bridge/UCW97/test/gaussian.jl:36
┌ Warning: Assignment to `p` in soft scope is ambiguous because a global variable by the same name exists: `p` will be treated as a new local. Disambiguate by using `local p` to suppress this warning or `global p` to assign to the existing global variable.
└ @ ~/.julia/packages/Bridge/UCW97/test/gaussian.jl:37
Testing Bridge tests passed