1.5.0-DEV-7f28d91b70.log

Julia Version 1.5.0-DEV.483
Commit 7f28d91b70 (2020-03-18 17:21 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
  JULIA_DEPOT_PATH = ::/usr/local/share/julia
  JULIA_NUM_THREADS = 2

  Resolving package versions...
  Installed Compat ────────────── v2.2.0
  Installed Libz ──────────────── v1.0.1
  Installed BGZFStreams ───────── v0.3.0
  Installed IndexableBitVectors ─ v1.0.0
  Installed BioSymbols ────────── v3.1.0
  Installed Automa ────────────── v0.8.0
  Installed BioAlignments ─────── v1.0.1
  Installed GenomicFeatures ───── v1.0.4
  Installed FixedPointNumbers ─── v0.7.1
  Installed OrderedCollections ── v1.1.0
  Installed RecipesBase ───────── v0.8.0
  Installed Combinatorics ─────── v0.7.0
  Installed Twiddle ───────────── v1.1.1
  Installed BufferedStreams ───── v1.0.0
  Installed DataStructures ────── v0.17.10
  Installed CodecZlib ─────────── v0.7.0
  Installed ColorTypes ────────── v0.9.1
  Installed BioCore ───────────── v2.0.5
  Installed Polynomials ───────── v0.6.1
  Installed TranscodingStreams ── v0.9.5
  Installed IntervalTrees ─────── v1.0.0
  Installed Zlib_jll ──────────── v1.2.11+8
  Installed YAML ──────────────── v0.4.0
  Installed URIParser ─────────── v0.4.0
  Installed BioSequences ──────── v1.1.0
#=#=#                                                                         

######################################################################## 100.0%
   Updating `~/.julia/environments/v1.5/Project.toml`
   00701ae9 + BioAlignments v1.0.1
   Updating `~/.julia/environments/v1.5/Manifest.toml`
   67c07d97 + Automa v0.8.0
   28d598bf + BGZFStreams v0.3.0
   00701ae9 + BioAlignments v1.0.1
   37cfa864 + BioCore v2.0.5
   7e6ae17a + BioSequences v1.1.0
   3c28c6f8 + BioSymbols v3.1.0
   e1450e63 + BufferedStreams v1.0.0
   944b1d66 + CodecZlib v0.7.0
   3da002f7 + ColorTypes v0.9.1
   861a8166 + Combinatorics v0.7.0
   34da2185 + Compat v2.2.0
   864edb3b + DataStructures v0.17.10
   53c48c17 + FixedPointNumbers v0.7.1
   899a7d2d + GenomicFeatures v1.0.4
   1cb3b9ac + IndexableBitVectors v1.0.0
   524e6230 + IntervalTrees v1.0.0
   2ec943e9 + Libz v1.0.1
   bac558e1 + OrderedCollections v1.1.0
   f27b6e38 + Polynomials v0.6.1
   3cdcf5f2 + RecipesBase v0.8.0
   3bb67fe8 + TranscodingStreams v0.9.5
   7200193e + Twiddle v1.1.1
   30578b45 + URIParser v0.4.0
   ddb6d928 + YAML v0.4.0
   83775a58 + Zlib_jll v1.2.11+8
   2a0f44e3 + Base64
   ade2ca70 + Dates
   8bb1440f + DelimitedFiles
   8ba89e20 + Distributed
   b77e0a4c + InteractiveUtils
   76f85450 + LibGit2
   8f399da3 + Libdl
   37e2e46d + LinearAlgebra
   56ddb016 + Logging
   d6f4376e + Markdown
   a63ad114 + Mmap
   44cfe95a + Pkg
   de0858da + Printf
   9abbd945 + Profile
   3fa0cd96 + REPL
   9a3f8284 + Random
   ea8e919c + SHA
   9e88b42a + Serialization
   1a1011a3 + SharedArrays
   6462fe0b + Sockets
   2f01184e + SparseArrays
   10745b16 + Statistics
   8dfed614 + Test
   cf7118a7 + UUIDs
   4ec0a83e + Unicode
    Testing BioAlignments
     Status `/tmp/jl_9OGUpo/Project.toml`
   67c07d97 Automa v0.8.0
   28d598bf BGZFStreams v0.3.0
   00701ae9 BioAlignments v1.0.1
   37cfa864 BioCore v2.0.5
   7e6ae17a BioSequences v1.1.0
   3c28c6f8 BioSymbols v3.1.0
   e1450e63 BufferedStreams v1.0.0
   899a7d2d GenomicFeatures v1.0.4
   524e6230 IntervalTrees v1.0.0
   ddb6d928 YAML v0.4.0
   37e2e46d LinearAlgebra
   de0858da Printf
   8dfed614 Test
     Status `/tmp/jl_9OGUpo/Manifest.toml`
   67c07d97 Automa v0.8.0
   28d598bf BGZFStreams v0.3.0
   00701ae9 BioAlignments v1.0.1
   37cfa864 BioCore v2.0.5
   7e6ae17a BioSequences v1.1.0
   3c28c6f8 BioSymbols v3.1.0
   e1450e63 BufferedStreams v1.0.0
   944b1d66 CodecZlib v0.7.0
   3da002f7 ColorTypes v0.9.1
   861a8166 Combinatorics v0.7.0
   34da2185 Compat v2.2.0
   864edb3b DataStructures v0.17.10
   53c48c17 FixedPointNumbers v0.7.1
   899a7d2d GenomicFeatures v1.0.4
   1cb3b9ac IndexableBitVectors v1.0.0
   524e6230 IntervalTrees v1.0.0
   2ec943e9 Libz v1.0.1
   bac558e1 OrderedCollections v1.1.0
   f27b6e38 Polynomials v0.6.1
   3cdcf5f2 RecipesBase v0.8.0
   3bb67fe8 TranscodingStreams v0.9.5
   7200193e Twiddle v1.1.1
   30578b45 URIParser v0.4.0
   ddb6d928 YAML v0.4.0
   83775a58 Zlib_jll v1.2.11+8
   2a0f44e3 Base64
   ade2ca70 Dates
   8bb1440f DelimitedFiles
   8ba89e20 Distributed
   b77e0a4c InteractiveUtils
   76f85450 LibGit2
   8f399da3 Libdl
   37e2e46d LinearAlgebra
   56ddb016 Logging
   d6f4376e Markdown
   a63ad114 Mmap
   44cfe95a Pkg
   de0858da Printf
   9abbd945 Profile
   3fa0cd96 REPL
   9a3f8284 Random
   ea8e919c SHA
   9e88b42a Serialization
   1a1011a3 SharedArrays
   6462fe0b Sockets
   2f01184e SparseArrays
   10745b16 Statistics
   8dfed614 Test
   cf7118a7 UUIDs
   4ec0a83e Unicode
Test Summary: | Pass  Total
Alignments    |  340    340
Test Summary:     | Pass  Total
PairwiseAlignment |  227    227
Cloning into '/home/pkgeval/.julia/packages/BioCore/YBJvb/BioFmtSpecimens'...
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
SAM           |  100    100
Already on 'master'
Your branch is up to date with 'origin/master'.
Test Summary: | Pass  Total
BAM           |  150    150
    Testing BioAlignments tests passed