Merge pull request nf-core#47 from JoseEspinosa/fixes

Update how image is set for report
JoseEspinosa · May 30, 2024 · 6a40708 · 6a40708
2 parents e967db0 + 97a3008
commit 6a40708
Showing 1 changed file with 6 additions and 3 deletions.
diff --git a/modules/local/make_report.nf b/modules/local/make_report.nf
@@ -2,9 +2,12 @@ process MAKE_REPORT {
     tag "$meta.id"
     label 'process_single'
 
-    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker://itrujnara/orthologs-report:1.0.0' :
-        'itrujnara/orthologs-report:1.0.0' }"
+    // Exit if running this module with -profile conda / -profile mamba
+    if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) {
+        error("Local MAKE_REPORT module does not support Conda. Please use Docker / Singularity / Podman instead.")
+    }
+
+    container "itrujnara/orthologs-report:1.0.0"
 
     input:
     tuple val(meta), path(id), path(taxid), path(exact), path(score_table), path(filtered_hits), path(support_plot), path(venn_plot), path(jaccard_plot), path(orthostats), path(seq_hits), path(seq_misses), path(str_hits), path(str_misses), path(alignment), path(iqtree), path(fastme), path(params_file)