Skip to content

Commit

Permalink
apacheGH-35627: [Format][Integration] Add string-view to arrow format (
Browse files Browse the repository at this point in the history
…apache#37526)

String view (and equivalent non-utf8 binary view) is an alternative representation for
variable length strings which offers greater efficiency for several common operations.
This representation is in use by UmbraDB, DuckDB, and Velox. Where those databases use
a raw pointer to out-of-line strings this PR uses a pair of 32 bit integers as a
buffer index and offset, which

-   makes explicit the guarantee that lifetime of all character data is equal
    to that of the array which views it, which is critical for confident
    consumption across an interface boundary
-   makes the arrays meaningfully serializable and
    venue agnostic; directly usable in shared memory without modification
-   allows easy validation

This PR is extracted from apache#35628 to unblock independent PRs now that the vote has passed, including:

-   New types added to Schema.fbs
-   Message.fbs amended to support variable buffer counts between string view chunks
-   datagen.py extended to produce integration JSON for string view arrays
-   Columnar.rst amended with a description of the string view format

* Closes: apache#35627

Authored-by: Benjamin Kietzman <[email protected]>
Signed-off-by: Benjamin Kietzman <[email protected]>
  • Loading branch information
bkietz authored and Jeremy Aguilon committed Oct 23, 2023
1 parent 0d86d70 commit 9763288
Show file tree
Hide file tree
Showing 4 changed files with 243 additions and 14 deletions.
105 changes: 105 additions & 0 deletions dev/archery/archery/integration/datagen.py
Original file line number Diff line number Diff line change
Expand Up @@ -665,6 +665,26 @@ def _get_type(self):
return OrderedDict([('name', 'largeutf8')])


class BinaryViewField(BinaryField):

@property
def column_class(self):
return BinaryViewColumn

def _get_type(self):
return OrderedDict([('name', 'binaryview')])


class StringViewField(StringField):

@property
def column_class(self):
return StringViewColumn

def _get_type(self):
return OrderedDict([('name', 'utf8view')])


class Schema(object):

def __init__(self, fields, metadata=None):
Expand Down Expand Up @@ -744,6 +764,74 @@ class LargeStringColumn(_BaseStringColumn, _LargeOffsetsMixin):
pass


class BinaryViewColumn(PrimitiveColumn):

def _encode_value(self, x):
return frombytes(binascii.hexlify(x).upper())

def _get_buffers(self):
views = []
data_buffers = []
# a small default data buffer size is used so we can exercise
# arrays with multiple data buffers with small data sets
DEFAULT_BUFFER_SIZE = 32
INLINE_SIZE = 12

for i, v in enumerate(self.values):
if not self.is_valid[i]:
v = b''
assert isinstance(v, bytes)

if len(v) <= INLINE_SIZE:
# Append an inline view, skip data buffer management.
views.append(OrderedDict([
('SIZE', len(v)),
('INLINED', self._encode_value(v)),
]))
continue

if len(data_buffers) == 0:
# No data buffers have been added yet;
# add this string whole (we may append to it later).
offset = 0
data_buffers.append(v)
elif len(data_buffers[-1]) + len(v) > DEFAULT_BUFFER_SIZE:
# Appending this string to the current active data buffer
# would overflow the default buffer size; add it whole.
offset = 0
data_buffers.append(v)
else:
# Append this string to the current active data buffer.
offset = len(data_buffers[-1])
data_buffers[-1] += v

# the prefix is always 4 bytes so it may not be utf-8
# even if the whole string view is
prefix = frombytes(binascii.hexlify(v[:4]).upper())

views.append(OrderedDict([
('SIZE', len(v)),
('PREFIX_HEX', prefix),
('BUFFER_INDEX', len(data_buffers) - 1),
('OFFSET', offset),
]))

return [
('VALIDITY', [int(x) for x in self.is_valid]),
('VIEWS', views),
('VARIADIC_DATA_BUFFERS', [
frombytes(binascii.hexlify(b).upper())
for b in data_buffers
]),
]


class StringViewColumn(BinaryViewColumn):

def _encode_value(self, x):
return frombytes(x)


class FixedSizeBinaryColumn(PrimitiveColumn):

def _encode_value(self, x):
Expand Down Expand Up @@ -1568,6 +1656,15 @@ def generate_run_end_encoded_case():
return _generate_file("run_end_encoded", fields, batch_sizes)


def generate_binary_view_case():
fields = [
BinaryViewField('bv'),
StringViewField('sv'),
]
batch_sizes = [0, 7, 256]
return _generate_file("binary_view", fields, batch_sizes)


def generate_nested_large_offsets_case():
fields = [
LargeListField('large_list_nullable', get_field('item', 'int32')),
Expand Down Expand Up @@ -1763,6 +1860,14 @@ def _temp_path():
.skip_tester('JS')
.skip_tester('Rust'),

generate_binary_view_case()
.skip_tester('C++')
.skip_tester('C#')
.skip_tester('Go')
.skip_tester('Java')
.skip_tester('JS')
.skip_tester('Rust'),

generate_extension_case()
.skip_tester('C#')
# TODO: ensure the extension is registered in the C++ entrypoint
Expand Down
112 changes: 98 additions & 14 deletions docs/source/format/Columnar.rst
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@
Arrow Columnar Format
*********************

*Version: 1.3*
*Version: 1.4*

The "Arrow Columnar Format" includes a language-agnostic in-memory
data structure specification, metadata serialization, and a protocol
Expand Down Expand Up @@ -108,6 +108,10 @@ the different physical layouts defined by Arrow:
* **Variable-size Binary**: a sequence of values each having a variable
byte length. Two variants of this layout are supported using 32-bit
and 64-bit length encoding.
* **Views of Variable-size Binary**: a sequence of values each having a
variable byte length. In contrast to Variable-size Binary, the values
of this layout are distributed across potentially multiple buffers
instead of densely and sequentially packed in a single buffer.
* **Fixed-size List**: a nested layout where each value has the same
number of elements taken from a child data type.
* **Variable-size List**: a nested layout where each value is a
Expand Down Expand Up @@ -350,6 +354,51 @@ will be represented as follows: ::
|----------------|-----------------------|
| joemark | unspecified (padding) |

Variable-size Binary View Layout
--------------------------------

.. versionadded:: Arrow Columnar Format 1.4

Each value in this layout consists of 0 or more bytes. These bytes'
locations are indicated using a **views** buffer, which may point to one
of potentially several **data** buffers or may contain the characters
inline.

The views buffer contains `length` view structures with the following layout:

::

* Short strings, length <= 12
| Bytes 0-3 | Bytes 4-15 |
|------------|---------------------------------------|
| length | data (padded with 0) |

* Long strings, length > 12
| Bytes 0-3 | Bytes 4-7 | Bytes 8-11 | Bytes 12-15 |
|------------|------------|------------|-------------|
| length | prefix | buf. index | offset |

In both the long and short string cases, the first four bytes encode the
length of the string and can be used to determine how the rest of the view
should be interpreted.

In the short string case the string's bytes are inlined- stored inside the
view itself, in the twelve bytes which follow the length.

In the long string case, a buffer index indicates which data buffer
stores the data bytes and an offset indicates where in that buffer the
data bytes begin. Buffer index 0 refers to the first data buffer, IE
the first buffer **after** the validity buffer and the views buffer.
The half-open range ``[offset, offset + length)`` must be entirely contained
within the indicated buffer. A copy of the first four bytes of the string is
stored inline in the prefix, after the length. This prefix enables a
profitable fast path for string comparisons, which are frequently determined
within the first four bytes.

All integers (length, buffer index, and offset) are signed.

This layout is adapted from TU Munich's `UmbraDB`_.

.. _variable-size-list-layout:

Variable-size List Layout
Expand Down Expand Up @@ -880,19 +929,20 @@ For the avoidance of ambiguity, we provide listing the order and type
of memory buffers for each layout.

.. csv-table:: Buffer Layouts
:header: "Layout Type", "Buffer 0", "Buffer 1", "Buffer 2"
:widths: 30, 20, 20, 20

"Primitive",validity,data,
"Variable Binary",validity,offsets,data
"List",validity,offsets,
"Fixed-size List",validity,,
"Struct",validity,,
"Sparse Union",type ids,,
"Dense Union",type ids,offsets,
"Null",,,
"Dictionary-encoded",validity,data (indices),
"Run-end encoded",,,
:header: "Layout Type", "Buffer 0", "Buffer 1", "Buffer 2", "Variadic Buffers"
:widths: 30, 20, 20, 20, 20

"Primitive",validity,data,,
"Variable Binary",validity,offsets,data,
"Variable Binary View",validity,views,,data
"List",validity,offsets,,
"Fixed-size List",validity,,,
"Struct",validity,,,
"Sparse Union",type ids,,,
"Dense Union",type ids,offsets,,
"Null",,,,
"Dictionary-encoded",validity,data (indices),,
"Run-end encoded",,,,

Logical Types
=============
Expand Down Expand Up @@ -1071,6 +1121,39 @@ bytes. Since this metadata can be used to communicate in-memory pointer
addresses between libraries, it is recommended to set ``size`` to the actual
memory size rather than the padded size.

Variadic buffers
^^^^^^^^^^^^^^^^

Some types such as Utf8View are represented using a variable number of buffers.
For each such Field in the pre-ordered flattened logical schema, there will be
an entry in ``variadicBufferCounts`` to indicate the number of variadic buffers
which belong to that Field in the current RecordBatch.

For example, consider the schema ::

col1: Struct<a: Int32, b: BinaryView, c: Float64>
col2: Utf8View

This has two fields with variadic buffers, so ``variadicBufferCounts`` will
have two entries in each RecordBatch. For a RecordBatch of this schema with
``variadicBufferCounts = [3, 2]``, the flattened buffers would be::

buffer 0: col1 validity
buffer 1: col1.a validity
buffer 2: col1.a values
buffer 3: col1.b validity
buffer 4: col1.b views
buffer 5: col1.b data
buffer 6: col1.b data
buffer 7: col1.b data
buffer 8: col1.c validity
buffer 9: col1.c values
buffer 10: col2 validity
buffer 11: col2 views
buffer 12: col2 data
buffer 13: col2 data


Byte Order (`Endianness`_)
---------------------------

Expand Down Expand Up @@ -1346,3 +1429,4 @@ the Arrow spec.
.. _Endianness: https://en.wikipedia.org/wiki/Endianness
.. _SIMD: https://software.intel.com/en-us/cpp-compiler-developer-guide-and-reference-introduction-to-the-simd-data-layout-templates
.. _Parquet: https://parquet.apache.org/docs/
.. _UmbraDB: https://db.in.tum.de/~freitag/papers/p29-neumann-cidr20.pdf
16 changes: 16 additions & 0 deletions format/Message.fbs
Original file line number Diff line number Diff line change
Expand Up @@ -99,6 +99,22 @@ table RecordBatch {

/// Optional compression of the message body
compression: BodyCompression;

/// Some types such as Utf8View are represented using a variable number of buffers.
/// For each such Field in the pre-ordered flattened logical schema, there will be
/// an entry in variadicBufferCounts to indicate the number of number of variadic
/// buffers which belong to that Field in the current RecordBatch.
///
/// For example, the schema
/// col1: Struct<a: Int32, b: BinaryView, c: Float64>
/// col2: Utf8View
/// contains two Fields with variadic buffers so variadicBufferCounts will have
/// two entries, the first counting the variadic buffers of `col1.b` and the
/// second counting `col2`'s.
///
/// This field may be omitted if and only if the schema contains no Fields with
/// a variable number of buffers, such as BinaryView and Utf8View.
variadicBufferCounts: [long];
}

/// For sending dictionary encoding information. Any Field can be
Expand Down
24 changes: 24 additions & 0 deletions format/Schema.fbs
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@
/// Version 1.1 - Add Decimal256.
/// Version 1.2 - Add Interval MONTH_DAY_NANO.
/// Version 1.3 - Add Run-End Encoded.
/// Version 1.4 - Add BinaryView, Utf8View, and variadicBufferCounts.

namespace org.apache.arrow.flatbuf;

Expand Down Expand Up @@ -171,6 +172,27 @@ table LargeUtf8 {
table LargeBinary {
}

/// Logically the same as Utf8, but the internal representation uses a view
/// struct that contains the string length and either the string's entire data
/// inline (for small strings) or an inlined prefix, an index of another buffer,
/// and an offset pointing to a slice in that buffer (for non-small strings).
///
/// Since it uses a variable number of data buffers, each Field with this type
/// must have a corresponding entry in `variadicBufferCounts`.
table Utf8View {
}

/// Logically the same as Binary, but the internal representation uses a header
/// struct that contains the string length and either the string's entire data
/// inline (for small strings) or an inlined prefix, an index of another buffer,
/// and an offset pointing to a slice in that buffer (for non-small strings).
///
/// Since it uses a variable number of data buffers, each Field with this type
/// must have a corresponding entry in `variadicBufferCounts`.
table BinaryView {
}


table FixedSizeBinary {
/// Number of bytes per value
byteWidth: int;
Expand Down Expand Up @@ -427,6 +449,8 @@ union Type {
LargeUtf8,
LargeList,
RunEndEncoded,
BinaryView,
Utf8View,
}

/// ----------------------------------------------------------------------
Expand Down

0 comments on commit 9763288

Please sign in to comment.