BATCH_AutoBleachCorrect_Personalized

/*
 * Macro template to process multiple images in a folder
 */

#@ File (label = "Input directory", style = "directory") input
#@ File (label = "Output directory", style = "directory") output
#@ String (label = "File suffix", value = ".tif") suffix

// See also Process_Folder.py for a version of this code
// in the Python scripting language.

processFolder(input);

// function to scan folders/subfolders/files to find files with correct suffix
function processFolder(input) {
	list = getFileList(input);
	list = Array.sort(list);
	for (i = 0; i < list.length; i++) {
		if(File.isDirectory(input + File.separator + list[i]))
			processFolder(input + File.separator + list[i]);
		if(endsWith(list[i], suffix))
			processFile(input, output, list[i]);
	}
}

function processFile(input, output, file) {

open(input+File.separator+list[i]);

name = getTitle();
NoExt = File.nameWithoutExtension;


Stack.getDimensions(width, height, channels, slices, frames);
run("Split Channels");
for (i = 1; i <= channels; i++) {

selectImage("C"+i+"-"+name);
chname = getTitle();

run("Bleach Correction", "correction=[Histogram Matching] background=5");
selectImage(chname);

close();




}


run("Merge Channels...", "c1=DUP_C2-"+name+" c2=DUP_C1-"+name+"  create ignore");
saveAs('tif', output+File.separator +'DUP_'+name);
close("*");
}