diff --git a/README.md b/README.md index 8ce71fd..99e5791 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,11 @@ `SEraster` is a rasterization preprocessing framework that aggregates cellular information into spatial pixels to reduce resource requirements for spatial omics data analysis. This is the `SEraster` R documentation website. Questions, suggestions, or problems should be submitted as [GitHub issues](https://github.com/JEFworks-Lab/SEraster/issues). -
++ + + +
## Overview @@ -36,4 +40,4 @@ Introduction: Our preprint describing `SEraster` is available on *bioRxiv*: -[Aihara G. et al. (2024), "SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis", *bioRxiv*](https://doi.org/10.1101/2024.02.01.578436) +[Aihara G. et al. (2024), "SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis", *bioRxiv*](https://doi.org/10.1101/2024.02.01.578436) \ No newline at end of file diff --git a/vignettes/formatting-SpatialExperiment-for-SEraster.Rmd b/vignettes/formatting-SpatialExperiment-for-SEraster.Rmd index dcefd34..f74cc5b 100644 --- a/vignettes/formatting-SpatialExperiment-for-SEraster.Rmd +++ b/vignettes/formatting-SpatialExperiment-for-SEraster.Rmd @@ -27,7 +27,6 @@ In the original work, [Moffitt J. and Bambah-Mukku D. et al. (2018), "Molecular, library(SpatialExperiment) library(Matrix) library(ggplot2) -library(gridExtra) ``` ## Load dataset diff --git a/vignettes/install.Rmd b/vignettes/install.Rmd index 63f85b6..6581b1b 100644 --- a/vignettes/install.Rmd +++ b/vignettes/install.Rmd @@ -22,13 +22,13 @@ require(remotes) remotes::install_github('JEFworks-Lab/SEraster') ``` -We are currently submitting `SEraster` to Bioconductor. +We are currently submitting `SEraster` to Bioconductor (this section will be updated after `SEraster` is approved to Bioconductor). -To install `SEraster`, start R (version "4.3") and enter: +To install `SEraster`, start R (version "4.4") and enter: ```{r} -if (!require("BiocManager", quietly = TRUE)) - install.packages("BiocManager") - -BiocManager::install("SEraster") +# if (!require("BiocManager", quietly = TRUE)) +# install.packages("BiocManager") +# +# BiocManager::install("SEraster") ``` \ No newline at end of file