You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
and passing the output through bcftools, I am getting some missing headers:
[W::bcf_hrec_check] Invalid tag name: "cnvnat_INFO"
[W::bcf_hrec_check] Invalid tag name: "cnvnat_SAMPLE"
[W::bcf_hrec_check] Invalid tag name: "cnvnat_CHROM"
[W::bcf_hrec_check] Invalid tag name: "cnvnat_POS"
[W::bcf_hrec_check] Invalid tag name: "cnvnat_QUAL"
[W::bcf_hrec_check] Invalid tag name: "cnvnat_FILTERS"
[W::bcf_hrec_check] Invalid tag name: "delly_INFO"
[W::bcf_hrec_check] Invalid tag name: "delly_SAMPLE"
[W::bcf_hrec_check] Invalid tag name: "delly_CHROM"
[W::bcf_hrec_check] Invalid tag name: "delly_POS"
[W::bcf_hrec_check] Invalid tag name: "delly_QUAL"
[W::bcf_hrec_check] Invalid tag name: "delly_FILTERS"
[W::bcf_hrec_check] Invalid tag name: "lumpy_INFO"
[W::bcf_hrec_check] Invalid tag name: "lumpy_SAMPLE"
[W::bcf_hrec_check] Invalid tag name: "lumpy_CHROM"
[W::bcf_hrec_check] Invalid tag name: "lumpy_POS"
[W::bcf_hrec_check] Invalid tag name: "lumpy_QUAL"
[W::bcf_hrec_check] Invalid tag name: "lumpy_FILTERS"
[W::bcf_hrec_check] Invalid tag name: "manta_INFO"
[W::bcf_hrec_check] Invalid tag name: "manta_SAMPLE"
[W::bcf_hrec_check] Invalid tag name: "manta_CHROM"
[W::bcf_hrec_check] Invalid tag name: "manta_POS"
[W::bcf_hrec_check] Invalid tag name: "manta_QUAL"
[W::bcf_hrec_check] Invalid tag name: "manta_FILTERS"
If I also include the option --notag, svdb_origin is not included in the header, even though it is in the VCF file.
The text was updated successfully, but these errors were encountered:
Running
svdb v2.6.1
as:and passing the output through
bcftools
, I am getting some missing headers:If I also include the option
--notag
,svdb_origin
is not included in the header, even though it is in the VCF file.The text was updated successfully, but these errors were encountered: