0.6.1

Fixed compression core dump bug.

0.8.1

AVX512 optimizations for SmithWaterman and minor updates

0.8.0

Added accelerated implementation of the SmithWaterman algorithm, using AVX2 instructions. Uses new native bindings version from Broad for compatibility with GATK 4.

0.6.0

This release is equivalent to 0.7, but uses logging compatible with GATK 3.8 (uses Log4J version 1.2). From the 0.7 release description:

This release has two major changes:

• support for AVX-512, for Skylake architectures, for the PairHMM algorithm.
• updated compression ISA-L library to latest version (2.19) for compression level 1

Note: AVX-512 support is not available for OS X. This will be added in an upcoming release.

0.7

This release has two major changes:

• support for AVX-512, for Skylake architectures, for the PairHMM algorithm
• updated compression ISA-L library to latest version (2.19) for compression level 1

Note: AVX-512 support is not available for OS X. This will be added in an upcoming release.

0.5.9

Fixes additional bugs for logging with GATK 3.

0.5.8

Fixed AVX detection (with log4j2 logging, compatible with GATK4)

0.5.7

Fixed AVX detection bugs (for AMD processors).

0.5.6

Made GKL logging compatible with log4j 1.x (previously it was only compatible with log4j2).

0.5.5

Minor fixes for ftz