diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..7324fd3 --- /dev/null +++ b/.gitignore @@ -0,0 +1,9 @@ +.pixi/ +emscripten-build/ +native/ +node_modules/ +python/ +wasi-build/ +pyodide/ +test/data.tar.gz +test/data/ \ No newline at end of file diff --git a/CMakeLists.txt b/CMakeLists.txt index e17b384..d55a398 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -2,9 +2,14 @@ cmake_minimum_required(VERSION 3.16.3) project(Cuberille) if(NOT ITK_SOURCE_DIR) - find_package(ITK 4.10 REQUIRED) + find_package(ITK 5.2 REQUIRED) list(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR}) include(ITKModuleExternal) + option(BUILD_ITK_WASM_PIPELINES "Build for WebAssembly pipelines" OFF) + if(WASI OR EMSCRIPTEN OR BUILD_ITK_WASM_PIPELINES) + set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}) + add_subdirectory(wasm) + endif() else() itk_module_impl() endif() diff --git a/package.json b/package.json new file mode 100644 index 0000000..2c9ee74 --- /dev/null +++ b/package.json @@ -0,0 +1,42 @@ +{ + "name": "itkwasm-cuberille-build", + "version": "0.2.0", + "private": true, + "description": "Scripts to generate itkwasm-cuberille ITK-Wasm artifacts.", + "type": "module", + "itk-wasm": { + "test-data-hash": "bafkreidnoz54py66bn56uq6itwkfgngflaqilflfvwkxlps4ycmygstzja", + "test-data-urls": [ + "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.179/sample-data.tar.gz", + "https://bafybeidxatrsrrphfmntdyze6ec3jbiak527wj3kalwjptv4bimpcnzxdq.ipfs.w3s.link/ipfs/bafybeidxatrsrrphfmntdyze6ec3jbiak527wj3kalwjptv4bimpcnzxdq/sample-data.tar.gz" + ], + "package-description": "Cuberille implicit surface polygonization to generate meshes from images.", + "typescript-package-name": "@itk-wasm/cuberille", + "python-package-name": "itkwasm-cuberille", + "repository": "https://github.com/InsightSoftwareConsortium/ITKCuberille" + }, + "license": "Apache-2.0", + "scripts": { + "build": "pnpm build:gen:typescript && pnpm build:gen:python", + "build:emscripten": "itk-wasm pnpm-script build:emscripten", + "build:emscripten:debug": "itk-wasm pnpm-script build:emscripten:debug", + "build:wasi": "itk-wasm pnpm-script build:wasi", + "build:wasi:debug": "itk-wasm pnpm-script build:wasi:debug", + "build:python:wasi": "echo 'No build:python:wasi script required with pixi'", + "bindgen:typescript": "itk-wasm pnpm-script bindgen:typescript", + "bindgen:python": "itk-wasm pnpm-script bindgen:python", + "build:gen:typescript": "itk-wasm pnpm-script build:gen:typescript", + "build:gen:python": "itk-wasm pnpm-script build:gen:python", + "test": "pixi run download-test-data && pnpm build:gen:python", + "test:wasi": "itk-wasm pnpm-script test:wasi" + }, + "devDependencies": { + "@itk-wasm/dam": "^1.1.1", + "itk-wasm": "1.0.0-b.184" + }, + "author": "Matt McCormick ", + "repository": { + "type": "git", + "url": "https://github.com/InsightSoftwareConsortium/ITKCuberille" + } +} diff --git a/pixi.lock b/pixi.lock new file 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get-caller-file: 2.0.5 + require-directory: 2.1.1 + string-width: 4.2.3 + y18n: 5.0.8 + yargs-parser: 21.1.1 + + yauzl@2.10.0: + dependencies: + buffer-crc32: 0.2.13 + fd-slicer: 1.1.0 + + zod@3.23.8: {} diff --git a/pnpm-workspace.yaml b/pnpm-workspace.yaml new file mode 100644 index 0000000..27c86b7 --- /dev/null +++ b/pnpm-workspace.yaml @@ -0,0 +1,2 @@ +packages: + - 'typescript' diff --git a/pyproject.toml b/pyproject.toml index 7d54a78..b42916e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ readme = "README.rst" license = {file = "LICENSE"} authors = [ { name = "Dan Meuller" }, - { name = "Matthew M. McCormick", email = "matt.mccormick@kitware.com" }, + { name = "Matthew M. McCormick", email = "matt@mmmccormick.com" }, ] keywords = [ "itk", @@ -114,3 +114,288 @@ minimum-version = "0.8.2" # The build directory. Defaults to a temporary directory, but can be set. build-dir = "build/{wheel_tag}" + +[tool.pixi.project] +authors = ["Matt McCormick "] +channels = ["conda-forge"] +description = "Cuberille implicit surface polygonization to generate meshes from images." +name = "itkwasm-cuberille" +platforms = ["win-64", "linux-64", "linux-aarch64", "osx-arm64"] +version = "0.1.0" + +[tool.pixi.environments] +native = ["native"] +python = ["python"] + +[tool.pixi.dependencies] +python = "3.12.*" +pnpm = ">=9.12.1,<10" +hatch = ">=1.13.0,<2" +pip = ">=24.2,<25" + +[tool.pixi.target.win-64.dependencies] +m2w64-jq = ">=1.6.0,<2" + +[tool.pixi.target.unix.dependencies] +jq = ">=1.7.1,<2" + +[tool.pixi.activation] +scripts = ["wasm/itk_wasm_env.bash"] + +[tool.pixi.tasks.build] +depends-on = ["build-native", "build-typescript", "build-python"] +description = "Build the project" + +[tool.pixi.tasks.test] +cmd = "pnpm run test" +depends-on = ["download-test-data", "test-native", "test-python"] +description = "Run tests" + +[tool.pixi.tasks.publish] +depends-on = ["publish-typescript", "publish-python-wasi", "publish-python-emscripten", "publish-python-dispatch"] +description = "Synchronize package versions" + +[tool.pixi.tasks.version-sync] +depends-on = ["version-sync-typescript", "version-sync-python-wasi", "version-sync-python-emscripten", "version-sync-python-dispatch"] +description = "Synchronize package versions" + +[tool.pixi.tasks.pack-test-data] +cmd = "npx dam pack test/data test/data.tar.gz" +depends-on = ["install-typescript"] +outputs = ["test/data.tar.gz"] +description = "Pack the data into a tarball for upload and print CID for package.json" + +[tool.pixi.tasks.download-test-data] +cmd = "npx dam download test/data test/data.tar.gz $ITK_WASM_TEST_DATA_HASH $ITK_WASM_TEST_DATA_URLS" +depends-on = ["install-typescript"] +outputs = ["test/data.tar.gz"] +description = "Download test data" + +[tool.pixi.tasks.install-typescript] +cmd = "pnpm install" +description = "Install typescript dependencies" + +[tool.pixi.tasks.build-typescript] +cmd = "pnpm run build:gen:typescript" +depends-on = ["install-typescript"] +description = "Build typescript components" + +[tool.pixi.tasks.test-typescript] +cmd = "pnpm test" +depends-on = ["download-test-data"] +cwd = "typescript" +description = "Test typescript components" + +[tool.pixi.tasks.version-sync-typescript] +cmd = '''version=$(cat package.json | jq .version) && + jq ".version = $version" typescript/package.json > typescript/package.json.tmp && + mv typescript/package.json.tmp typescript/package.json''' + +[tool.pixi.tasks.publish-typescript] +cmd = "pnpm publish --filter \"{typescript}\"" + +[tool.pixi.feature.python.dependencies] +pytest = ">=8.3.3,<9" + +[tool.pixi.feature.python.pypi-dependencies] +pyodide-py = ">=0.26.4, <0.27" +pytest-pyodide = ">=0.58.3, <0.59" +itkwasm = ">=1.0b180, <2" + +[tool.pixi.tasks.build-python] +cmd = "pnpm run build:gen:python" +depends-on = ["install-typescript"] +description = "Build python components" + +[tool.pixi.feature.python.tasks.download-pyodide] +cmd = '''curl -L https://github.com/pyodide/pyodide/releases/download/0.26.4/pyodide-0.26.4.tar.bz2 -o pyodide.tar.bz2 && + tar xjf pyodide.tar.bz2 && + rm pyodide.tar.bz2''' +outputs = ["pyodide"] +description = "Download Pyodide" + +[tool.pixi.feature.python.tasks.test-wasi] +cmd = "pytest" +cwd = "python/itkwasm-cuberille-wasi" +description = "Run tests for itkwasm-cuberille-wasi" + +[tool.pixi.feature.python.tasks.serve-emscripten] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + echo \"\nVisit http://localhost:8877/console.html\n\" && + python -m http.server --directory=./dist/pyodide 8877''' +cwd = "python/itkwasm-cuberille-emscripten" +depends-on = ["download-pyodide"] +description = "Serve itkwasm-cuberille-emscripten for development" + +[tool.pixi.feature.python.tasks.test-emscripten] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + pytest --dist-dir=./dist/pyodide --rt=chrome''' +cwd = "python/itkwasm-cuberille-emscripten" +depends-on = ["download-pyodide"] +description = "Run tests for itkwasm-cuberille-emscripten" + +[tool.pixi.feature.python.tasks.serve-dispatch] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + echo \"\nVisit http://localhost:8877/console.html\n\" && + python -m http.server --directory=./dist/pyodide 8877''' +cwd = "python/itkwasm-cuberille" +depends-on = ["download-pyodide"] +description = "Serve itkwasm-cuberille for development" + +[tool.pixi.feature.python.tasks.test-dispatch] +cmd = '''mkdir -p dist/pyodide && + cp -r ../../pyodide dist/ && + hatch build -t wheel ./dist/pyodide/ && + cd ../itkwasm-cuberille-emscripten && + hatch build -t wheel ./dist/pyodide/ && + cd ../itkwasm-cuberille && + cp ../itkwasm-cuberille-emscripten/dist/pyodide/*_emscripten*.whl ./dist/pyodide/ && + pytest --dist-dir=./dist/pyodide --rt=chrome''' +cwd = "python/itkwasm-cuberille" +depends-on = ["download-pyodide"] +description = "Run python tests for itkwasm-cuberille" + +[tool.pixi.feature.python.tasks.test-python] +depends-on = ["test-wasi", "test-emscripten", "test-dispatch"] +description = "Run tests for all Python packages" + +[tool.pixi.tasks.version-sync-python-wasi] +cmd = '''version=$(cat ../../package.json | jq -r .version) && + echo "version is $version" && + hatch version $version''' +cwd = "python/itkwasm-cuberille-wasi" + +[tool.pixi.tasks.version-sync-python-emscripten] +cmd = '''version=$(cat ../../package.json | jq -r .version) && + hatch version $version''' +cwd = "python/itkwasm-cuberille-emscripten" + +[tool.pixi.tasks.version-sync-python-dispatch] +cmd = '''version=$(cat ../../package.json | jq -r .version) && + hatch version $version''' +cwd = "python/itkwasm-cuberille" + +[tool.pixi.tasks.publish-python-user-check] +cmd = "if [ -n \"$HATCH_INDEX_USER\"]; then echo \"HATCH_INDEX_USER is set\"; else echo \"HATCH_INDEX_USER is not set\"; exit 1; fi" + +[tool.pixi.tasks.publish-python-wasi] +cmd = '''hatch build && + hatch publish''' +cwd = "python/itkwasm-cuberille-wasi" + +[tool.pixi.tasks.publish-python-emscripten] +cmd = '''hatch build && + hatch publish''' +cwd = "python/itkwasm-cuberille-emscripten" + +[tool.pixi.tasks.publish-python-dispatch] +cmd = '''hatch build && + hatch publish''' +cwd = "python/itkwasm-cuberille" +[tool.pixi.feature.native.tasks.clone-itk] +cmd = ["stat", "$ITK_WASM_ITK_SOURCE_DIR", ">/dev/null", "||", + "git", "clone", + "--depth=10", + "--branch=$ITK_WASM_ITK_BRANCH", + "$ITK_WASM_ITK_REPOSITORY", + "$ITK_WASM_ITK_SOURCE_DIR"] +# Note: pixi does not seem to reliably support activation environmental variables in task inputs / outputs +outputs = ["native/ITK/LICENSE"] +description = "Fetch ITK's source code" + +[tool.pixi.feature.native.tasks.configure-itk] +cmd = '''cmake -B$ITK_WASM_ITK_BUILD_DIR -S$ITK_WASM_ITK_SOURCE_DIR -GNinja + -DCMAKE_CXX_STANDARD:STRING=20 + -DCMAKE_BUILD_TYPE:STRING=Debug + -DBUILD_EXAMPLES:BOOL=OFF + -DBUILD_TESTING:BOOL=OFF + -DBUILD_SHARED_LIBS:BOOL=OFF + -DBUILD_STATIC_LIBS:BOOL=ON + -DITK_LEGACY_REMOVE:BOOL=ON + -DITK_BUILD_DEFAULT_MODULES:BOOL=OFF + -DITKGroup_Core:BOOL=OFF + -DModule_ITKCommon:BOOL=ON + -DModule_ITKImageFunction:BOOL=ON + -DModule_ITKImageGradient:BOOL=ON + -DModule_ITKMesh:BOOL=ON + -DModule_ITKConnectedComponents:BOOL=ON + -DModule_ITKIOImageBase:BOOL=ON + -DModule_ITKQuadEdgeMesh:BOOL=ON + -DModule_ITKQuadEdgeMeshFiltering:BOOL=ON + -DModule_ITKThresholding:BOOL=ON + -DModule_ITKTestKernel:BOOL=ON + -DModule_ITKIOTransformBase:BOOL=ON + -DModule_ITKIOMeshBase:BOOL=ON + -DModule_ITKAntiAlias:BOOL=ON + -DH5_HAVE_GETPWUID:BOOL=OFF + -DModule_MeshToPolyData:BOOL=ON + -DDO_NOT_BUILD_ITK_TEST_DRIVER:BOOL=ON + -DOPJ_USE_THREAD:BOOL=OFF + -DNO_FLOAT_EXCEPTIONS:BOOL=ON + -DITK_MSVC_STATIC_RUNTIME_LIBRARY=ON''' +depends-on = ["clone-itk"] +# Note: pixi does not seem to reliably support activation environmental variables in task inputs / outputs +# outputs = ["$ITK_WASM_ITK_BUILD_DIR/CMakeFiles/"] +outputs = ["native/ITK-build/CMakeFiles/**"] +description = "Configure ITK" + +[tool.pixi.feature.native.tasks.build-itk] +cmd = "cmake --build $ITK_WASM_ITK_BUILD_DIR" +depends-on = ["configure-itk"] +outputs = ["native/ITK-build/**"] +description = "Build ITK" + +[tool.pixi.feature.native.tasks.clone-itk-wasm] +cmd = ["stat", "$ITK_WASM_WEBASSEMBLY_INTERFACE_SOURCE_DIR", ">/dev/null", "||", + "git", "clone", + "--depth=10", + "--branch=$ITK_WASM_WEBASSEMBLY_INTERFACE_BRANCH", + "$ITK_WASM_WEBASSEMBLY_INTERFACE_REPOSITORY", + "$ITK_WASM_WEBASSEMBLY_INTERFACE_SOURCE_DIR"] +# Note: pixi does not seem to reliably support activation environmental variables in task inputs / outputs +outputs = ["native/ITK-Wasm/LICENSE"] +description = "Fetch ITK's source code" + +[tool.pixi.feature.native.tasks.configure-itk-wasm] +cmd = '''cmake -B$ITK_WASM_NATIVE_WORKSPACE/ITK-Wasm-build + -S$ITK_WASM_NATIVE_WORKSPACE/ITK-Wasm + -GNinja + -DITK_DIR:PATH=$ITK_WASM_ITK_BUILD_DIR + -DBUILD_TESTING:BOOL=OFF + -DCMAKE_CXX_STANDARD:STRING=20 + -DCMAKE_BUILD_TYPE:STRING=Debug''' +depends-on = ["build-itk", "clone-itk-wasm"] +outputs = ["native/ITK-Wasm-build/CMakeFiles/"] +description = "Configure ITK-Wasm" + +[tool.pixi.feature.native.tasks.build-itk-wasm] +cmd = "cmake --build $ITK_WASM_NATIVE_WORKSPACE/ITK-Wasm-build" +depends-on = ["configure-itk-wasm"] +description = "Build ITK-Wasm" + +[tool.pixi.feature.native.tasks.configure-native] +cmd = '''cmake -B$ITK_WASM_NATIVE_WORKSPACE/itkwasm-cuberille-build -S. -GNinja + -DITK_DIR:PATH=$ITK_WASM_ITK_BUILD_DIR + -DBUILD_TESTING:BOOL=ON + -DBUILD_ITK_WASM_PIPELINES:BOOL=ON + -DCMAKE_CXX_STANDARD:STRING=20 + -DCMAKE_BUILD_TYPE:STRING=Debug''' +depends-on = ["build-itk-wasm"] +description = "Configure native build" + +[tool.pixi.feature.native.tasks.build-native] +cmd = "cmake --build $ITK_WASM_NATIVE_WORKSPACE/itkwasm-cuberille-build" +depends-on = ["configure-native"] +description = "Build native binaries" + +[tool.pixi.feature.native.tasks.test-native] +cmd = "ctest --test-dir $ITK_WASM_NATIVE_WORKSPACE/itkwasm-cuberille-build" +depends-on = ["build-native"] +description = "Test native binaries" + diff --git a/test/Input/brain-seg.nii.gz b/test/Input/brain-seg.nii.gz new file mode 100644 index 0000000..0d20dbd Binary files /dev/null and b/test/Input/brain-seg.nii.gz differ diff --git a/test/Input/tinyT1.nii.gz b/test/Input/tinyT1.nii.gz new file mode 100644 index 0000000..4ae8ffb Binary files /dev/null and b/test/Input/tinyT1.nii.gz differ diff --git a/typescript/package.json b/typescript/package.json new file mode 100644 index 0000000..1fd442a --- /dev/null +++ b/typescript/package.json @@ -0,0 +1,62 @@ +{ + "name": "@itk-wasm/cuberille", + "version": "0.2.0", + "description": "Cuberille implicit surface polygonization to generate meshes from images.", + "type": "module", + "module": "./dist/index.js", + "types": "./dist/index-all.d.ts", + "exports": { + ".": { + "types": "./dist/index-all.d.ts", + "browser": "./dist/index.js", + "node": "./dist/index-node.js", + "default": "./dist/index-all.js" + } + }, + "scripts": { + "start": "pnpm copyDemoAppAssets && vite", + "test": "pnpm test:node", + "test:node": "ava", + "build": "pnpm build:tsc && pnpm build:browser:workerEmbedded && pnpm build:browser:workerEmbeddedMin && pnpm build:demo", + "build:browser:workerEmbedded": "esbuild --loader:.worker.js=dataurl --bundle --format=esm --outfile=./dist/bundle/index-worker-embedded.js ./src/index-worker-embedded.ts", + "build:browser:workerEmbeddedMin": "esbuild --minify --loader:.worker.js=dataurl --bundle --format=esm --outfile=./dist/bundle/index-worker-embedded.min.js ./src/index-worker-embedded.min.ts", + "build:version": "node -p \"'const version = ' + JSON.stringify(require('./package.json').version) + '\\nexport default version\\n'\" > src/version.ts", + "build:tsc": "pnpm build:version && tsc --pretty", + "copyDemoAppAssets": "shx mkdir -p test/browser/demo-app/public && shx cp -r node_modules/@itk-wasm/demo-app/dist/assets test/browser/demo-app/public/", + "build:demo": "pnpm copyDemoAppAssets && vite build" + }, + "keywords": [ + "itk", + "wasm", + "webassembly", + "wasi" + ], + "author": "", + "license": "Apache-2.0", + "dependencies": { + "itk-wasm": "1.0.0-b.184" + }, + "devDependencies": { + "@itk-wasm/demo-app": "^0.2.0", + "@itk-wasm/image-io": "^1.3.1", + "@itk-wasm/mesh-io": "^1.4.2", + "@itk-wasm/transform-io": "^0.1.1", + "@types/node": "^20.2.5", + "ava": "^6.2.0", + "esbuild": "^0.19.8", + "shx": "^0.3.4", + "typescript": "^5.3.2", + "vite": "^4.5.0", + "vite-plugin-static-copy": "^0.17.0" + }, + "repository": { + "type": "git", + "url": "https://github.com/InsightSoftwareConsortium/ITKCuberille" + }, + "ava": { + "files": [ + "test/node/**/*.js", + "!test/node/common.js" + ] + } +} diff --git a/typescript/test/node/anti-alias-cuberille-test.js b/typescript/test/node/anti-alias-cuberille-test.js new file mode 100644 index 0000000..a25df6d --- /dev/null +++ b/typescript/test/node/anti-alias-cuberille-test.js @@ -0,0 +1,19 @@ +import test from 'ava' +import path from 'path' + +import { readImageNode } from '@itk-wasm/image-io' +import { antiAliasCuberilleNode } from '../../dist/index-node.js' +import { testInputPath } from './common.js' + +test('Test cuberille', async t => { + const testInputFilePath = path.join(testInputPath, 'brain-seg.nii.gz') + + const image = await readImageNode(testInputFilePath) + const { mesh } = await antiAliasCuberilleNode(image, { surfaceDistanceThreshold: 0.5, iterations: 15, maximumSteps: 15 }) + + t.assert(mesh, 'antiAliasCuberille did not return a mesh') + t.is(mesh.numberOfPoints, 6274) + t.is(mesh.points.length, 18822) + t.is(mesh.numberOfCells, 12544) + t.is(mesh.cells.length, 62720) +}) diff --git a/typescript/test/node/common.js b/typescript/test/node/common.js new file mode 100644 index 0000000..38f49c4 --- /dev/null +++ b/typescript/test/node/common.js @@ -0,0 +1,7 @@ +import path from 'path' +import fs from 'fs' + +export const testInputPath = path.resolve('..', 'test', 'Input') +export const testBaselinePath = path.resolve('..', 'test', 'Baseline') +export const testOutputPath = path.resolve('..', 'test', 'Output', 'typescript') +fs.mkdirSync(testOutputPath, { recursive: true }) \ No newline at end of file diff --git a/typescript/test/node/cuberille-test.js b/typescript/test/node/cuberille-test.js new file mode 100644 index 0000000..f077f44 --- /dev/null +++ b/typescript/test/node/cuberille-test.js @@ -0,0 +1,19 @@ +import test from 'ava' +import path from 'path' + +import { readImageNode } from '@itk-wasm/image-io' +import { cuberilleNode } from '../../dist/index-node.js' +import { testInputPath } from './common.js' + +test('Test cuberille', async t => { + const testInputFilePath = path.join(testInputPath, 'fuel.mha') + + const image = await readImageNode(testInputFilePath) + const { mesh } = await cuberilleNode(image) + + t.assert(mesh, 'cuberille did not return a mesh') + t.is(mesh.numberOfPoints, 6274) + t.is(mesh.points.length, 18822) + t.is(mesh.numberOfCells, 12544) + t.is(mesh.cells.length, 62720) +}) diff --git a/wasm/CMakeLists.txt b/wasm/CMakeLists.txt new file mode 100644 index 0000000..0509278 --- /dev/null +++ b/wasm/CMakeLists.txt @@ -0,0 +1,26 @@ +cmake_minimum_required(VERSION 3.16) +project(itkwasm-cuberille LANGUAGES CXX) + +set(CMAKE_CXX_STANDARD 20) + +set(io_components) +if (NOT WASI AND NOT EMSCRIPTEN) + set(io_components + ITKIONIFTI + ITKIOMeta + ITKIOMeshOFF + ITKIOMeshVTK) +endif() + +find_package(ITK REQUIRED COMPONENTS + WebAssemblyInterface + ${io_components} +) +include(${ITK_USE_FILE}) + +enable_testing() + +# Begin create-itk-wasm added pipelines. +add_subdirectory(cuberille) +add_subdirectory(anti-alias-cuberille) +# End create-itk-wasm added pipelines. diff --git a/wasm/README.md b/wasm/README.md new file mode 100644 index 0000000..3924480 --- /dev/null +++ b/wasm/README.md @@ -0,0 +1,3 @@ +# itkwasm-cuberille + +Cuberille implicit surface polygonization diff --git a/wasm/anti-alias-cuberille/CMakeLists.txt b/wasm/anti-alias-cuberille/CMakeLists.txt new file mode 100644 index 0000000..e8dcaa9 --- /dev/null +++ b/wasm/anti-alias-cuberille/CMakeLists.txt @@ -0,0 +1,55 @@ +add_executable(anti-alias-cuberille anti-alias-cuberille.cxx) + +find_package(ITK REQUIRED COMPONENTS + WebAssemblyInterface + ITKAntiAlias + ITKSmoothing + ITKLabelMap + ${io_components} +) +include(${ITK_USE_FILE}) + +target_link_libraries(anti-alias-cuberille PUBLIC ${ITK_LIBRARIES}) + +add_test(NAME anti-alias-cuberille-help COMMAND anti-alias-cuberille --help) + +add_test(NAME anti-alias-cuberille-defaults + COMMAND anti-alias-cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/brain-seg.nii.gz + ${CMAKE_CURRENT_BINARY_DIR}/anti-alias-cuberille-defaults.off + --no-closing) + +add_test(NAME anti-alias-cuberille-convergence-options + COMMAND anti-alias-cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/brain-seg.nii.gz + ${CMAKE_CURRENT_BINARY_DIR}/anti-alias-cuberille-convergence-options.vtk + --surface-distance-threshold 0.01 + --maximum-steps 150 + --step-relaxation-factor 0.75) + +add_test(NAME anti-alias-cuberille-quadrilateral-faces + COMMAND anti-alias-cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/brain-seg.nii.gz + ${CMAKE_CURRENT_BINARY_DIR}/anti-alias-cuberille-quadrilateral-faces.off + --quadrilateral-faces + --no-closing + --surface-distance-threshold 0.5 + --maximum-steps 150 + --step-relaxation-factor 0.75 + ) + +add_test(NAME anti-alias-cuberille-bspline + COMMAND anti-alias-cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/brain-seg.nii.gz + ${CMAKE_CURRENT_BINARY_DIR}/anti-alias-cuberille-bspline.vtk + --surface-distance-threshold 0.5 + --maximum-steps 200 + --interpolator bspline) + +add_test(NAME anti-alias-cuberille-windowed-sinc + COMMAND anti-alias-cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/brain-seg.nii.gz + ${CMAKE_CURRENT_BINARY_DIR}/anti-alias-cuberille-windowed-sinc.vtk + --surface-distance-threshold 0.5 + --maximum-steps 200 + --interpolator windowed-sinc) \ No newline at end of file diff --git a/wasm/anti-alias-cuberille/anti-alias-cuberille.cxx b/wasm/anti-alias-cuberille/anti-alias-cuberille.cxx new file mode 100644 index 0000000..3ce3899 --- /dev/null +++ b/wasm/anti-alias-cuberille/anti-alias-cuberille.cxx @@ -0,0 +1,226 @@ +/*========================================================================= + + * Copyright NumFOCUS + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * https://www.apache.org/licenses/LICENSE-2.0.txt + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * + *=========================================================================*/ + +#include "itkMesh.h" + +#include "itkMeshJSON.h" +#include "itkPipeline.h" +#include "itkInputImage.h" +#include "itkOutputMesh.h" +#include "itkSupportInputImageTypes.h" + +#include "itkCuberilleImageToMeshFilter.h" +#include "itkLinearInterpolateImageFunction.h" +#include "itkBSplineInterpolateImageFunction.h" +#include "itkWindowedSincInterpolateImageFunction.h" +#include "itkAntiAliasBinaryImageFilter.h" +#include "itkSmoothingRecursiveGaussianImageFilter.h" +#include "itkBinaryFillholeImageFilter.h" +#include "itkGrayscaleMorphologicalClosingImageFilter.h" +#include "itkFlatStructuringElement.h" + +template +int cuberilleWithInterpolator(itk::wasm::Pipeline & pipeline, const TImage * image) +{ + using ImageType = TImage; + using MeshType = TMesh; + using InterpolatorType = TInterpolator; + + pipeline.get_option("image")->required()->type_name("INPUT_IMAGE"); + + double maximumRMSError = 0.07; + pipeline.add_flag("--maximum-rms-error", maximumRMSError, "Maximum root mean square error for the anti-aliasing filter. Smaller is smoother but takes longer."); + + uint32_t numberOfIterations = 1000; + pipeline.add_flag("--iterations", numberOfIterations, "Number of iterations for the anti-aliasing filter. Larger is smoother but takes longer."); + + double smoothingSigma = 0.95; + pipeline.add_option("--smoothing-sigma", smoothingSigma, "Sigma for the Gaussian smoothing filter in pixel units."); + + bool noFillHoles = false; + pipeline.add_flag("--no-fill-holes", noFillHoles, "Do not fill holes in the binary image before anti-aliasing."); + + bool noClosing = false; + pipeline.add_flag("--no-closing", noClosing, "Do not close the smoothed, anti-aliased image before mesh generation."); + + double isoSurfaceValue = 0.0; + pipeline.add_flag("--iso-surface-value", isoSurfaceValue, "Value of the iso-surface on the normalized, anti-aliased image for which to generate the mesh. Pixels equal to or greater than this value are considered to lie on the surface or inside the resultant mesh. [-4.0, 4.0]"); + + bool quadrilateralFaces = false; + pipeline.add_flag("--quadrilateral-faces", quadrilateralFaces, "Generate quadrilateral faces instead of triangle faces."); + + double projectVertexSurfaceDistanceThreshold = 0.01; + pipeline.add_option("--surface-distance-threshold", projectVertexSurfaceDistanceThreshold, "Threshold for the distance from the iso-surface during vertex projection in pixel units. Smaller is smoother but takes longer."); + + double projectVertexStepLength = -1.0; + pipeline.add_option("--step-length", projectVertexStepLength, "Initial step length for vertex projection in physical units. Default is max spacing * 0.35."); + + double projectVertexStepLengthRelaxationFactor = 0.75; + pipeline.add_option("--step-relaxation-factor", projectVertexStepLengthRelaxationFactor, "The step length relaxation factor during vertex projection. The step length is multiplied by this factor each iteration to allow convergence, [0.0, 1.0].")->check(CLI::Range(0.0, 1.0)); + + uint32_t projectVertexMaximumNumberOfSteps = 150; + pipeline.add_option("--maximum-steps", projectVertexMaximumNumberOfSteps, "The maximum number of steps used during vertex projection."); + + itk::wasm::OutputMesh mesh; + pipeline.add_option("mesh", mesh, "Output mesh.")->required()->type_name("OUTPUT_MESH"); + + ITK_WASM_PARSE(pipeline); + + using FillholeFilterType = itk::BinaryFillholeImageFilter; + const auto fillholeFilter = FillholeFilterType::New(); + fillholeFilter->SetInput(image); + + using FloatImageType = itk::Image; + using AntiAliasFilterType = itk::AntiAliasBinaryImageFilter; + const auto antiAliasFilter = AntiAliasFilterType::New(); + if (noFillHoles) + { + antiAliasFilter->SetInput(image); + } + else + { + antiAliasFilter->SetInput(fillholeFilter->GetOutput()); + } + antiAliasFilter->SetMaximumRMSError(maximumRMSError); + antiAliasFilter->SetNumberOfIterations(numberOfIterations); + + using SmoothingFilterType = itk::SmoothingRecursiveGaussianImageFilter; + const auto smoothingFilter = SmoothingFilterType::New(); + smoothingFilter->SetInput(antiAliasFilter->GetOutput()); + typename SmoothingFilterType::SigmaArrayType sigma; + for (unsigned int i = 0; i < ImageType::ImageDimension; ++i) + { + sigma[i] = image->GetSpacing()[i] * smoothingSigma; + } + smoothingFilter->SetSigmaArray(sigma); + + using StructuringElementType = itk::FlatStructuringElement; + using ClosingFilterType = itk::GrayscaleMorphologicalClosingImageFilter; + const auto closingFilter = ClosingFilterType::New(); + closingFilter->SetInput(smoothingFilter->GetOutput()); + typename StructuringElementType::RadiusType closingRadius; + closingRadius.Fill(1); + const auto closingStructuringElement = StructuringElementType::Ball(closingRadius, false); + closingFilter->SetKernel(closingStructuringElement); + + using InterpolatorBaseType = itk::InterpolateImageFunction; + using CuberilleType = itk::CuberilleImageToMeshFilter; + + const auto cuberille = CuberilleType::New(); + + const auto interpolator = InterpolatorType::New(); + cuberille->SetInterpolator(interpolator); + + if (noClosing) + { + interpolator->SetInputImage(smoothingFilter->GetOutput()); + cuberille->SetInput(smoothingFilter->GetOutput()); + } + else + { + interpolator->SetInputImage(closingFilter->GetOutput()); + cuberille->SetInput(closingFilter->GetOutput()); + } + cuberille->SetIsoSurfaceValue(isoSurfaceValue); + cuberille->SetGenerateTriangleFaces(!quadrilateralFaces); + cuberille->SetProjectVertexSurfaceDistanceThreshold(projectVertexSurfaceDistanceThreshold); + if (projectVertexStepLength > 0.0) + { + cuberille->SetProjectVertexStepLength(projectVertexStepLength); + } + else + { + cuberille->SetProjectVertexStepLength(image->GetSpacing().GetVnlVector().max_value() * 0.35); + } + cuberille->SetProjectVertexStepLengthRelaxationFactor(projectVertexStepLengthRelaxationFactor); + cuberille->SetProjectVertexMaximumNumberOfSteps(projectVertexMaximumNumberOfSteps); + + ITK_WASM_CATCH_EXCEPTION(pipeline, cuberille->Update()); + + const typename MeshType::ConstPointer outputMesh = cuberille->GetOutput(); + mesh.Set(outputMesh); + + return EXIT_SUCCESS; +} + +template +int cuberille(itk::wasm::Pipeline &pipeline, const TImage * image) +{ + using ImageType = TImage; + constexpr unsigned int Dimension = ImageType::ImageDimension; + using PixelType = typename ImageType::PixelType; + using MeshType = itk::Mesh; + + using FloatImageType = itk::Image; + + std::string interpolationMethod = "linear"; + pipeline.add_option("--interpolator", interpolationMethod, "Interpolation method to use for the image. Valid values: linear, bspline, windowed-sync.")->check(CLI::IsMember({"linear", "bspline", "windowed-sinc"})); + + ITK_WASM_PRE_PARSE(pipeline); + + if (interpolationMethod == "linear") + { + using InterpolatorType = itk::LinearInterpolateImageFunction; + return cuberilleWithInterpolator(pipeline, image); + } + else if (interpolationMethod == "bspline") + { + using InterpolatorType = itk::BSplineInterpolateImageFunction; + return cuberilleWithInterpolator(pipeline, image); + } + else if (interpolationMethod == "windowed-sinc") + { + constexpr unsigned int VRadius = 3; + using InterpolatorType = itk::WindowedSincInterpolateImageFunction; + return cuberilleWithInterpolator(pipeline, image); + } + else + { + std::ostringstream ostrm; + ostrm << "Unknown interpolation method: " << interpolationMethod; + CLI::Error err("Runtime error", ostrm.str(), 1); + return pipeline.exit(err); + } +} + +template +class PipelineFunctor +{ +public: + int operator()(itk::wasm::Pipeline &pipeline) + { + using ImageType = TImage; + + itk::wasm::InputImage image; + pipeline.add_option("image", image, "Input image")->type_name("INPUT_IMAGE"); + + ITK_WASM_PRE_PARSE(pipeline); + + typename ImageType::ConstPointer imageRef = image.Get(); + return cuberille(pipeline, imageRef); + } +}; + +int main(int argc, char * argv[]) +{ + itk::wasm::Pipeline pipeline("cuberille", "Anti-alias a label image and create a mesh via cuberille implicit surface polygonization.", argc, argv); + + return itk::wasm::SupportInputImageTypes + ::Dimensions<2U, 3U>("image", pipeline); +} diff --git a/wasm/cuberille/CMakeLists.txt b/wasm/cuberille/CMakeLists.txt new file mode 100644 index 0000000..a41a0a9 --- /dev/null +++ b/wasm/cuberille/CMakeLists.txt @@ -0,0 +1,65 @@ +add_executable(cuberille cuberille.cxx) +target_link_libraries(cuberille PUBLIC ${ITK_LIBRARIES}) + +add_test(NAME cuberille-help COMMAND cuberille --help) + +add_test(NAME cuberille-defaults + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/fuel.mha + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-defaults.vtk) + +add_test(NAME cuberille-convergence-options + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/fuel.mha + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-convergence-options.vtk + --surface-distance-threshold 0.2 + --step-length 0.24 + --step-relaxation-factor 0.95 + --maximum-steps 100) + +add_test(NAME cuberille-no-projection + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/fuel.mha + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-no-projection.vtk + --surface-distance-threshold 0.2 + --step-length 0.24 + --step-relaxation-factor 0.95 + --maximum-steps 100 + --no-projection) + +add_test(NAME cuberille-quadrilateral-faces + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/fuel.mha + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-quadrilateral-faces.vtk + --surface-distance-threshold 0.2 + --step-length 0.24 + --step-relaxation-factor 0.95 + --maximum-steps 100 + --quadrilateral-faces) + +add_test(NAME cuberille-bspline + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/fuel.mha + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-bspline.vtk + --surface-distance-threshold 0.2 + --step-length 0.24 + --step-relaxation-factor 0.95 + --maximum-steps 100 + --interpolator bspline) + +add_test(NAME cuberille-windowed-sinc + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/fuel.mha + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-windowed-sinc.vtk + --surface-distance-threshold 0.2 + --step-length 0.24 + --step-relaxation-factor 0.95 + --maximum-steps 100 + --interpolator windowed-sinc) + +add_test(NAME cuberille-brain + COMMAND cuberille + ${CMAKE_CURRENT_SOURCE_DIR}/../../test/Input/tinyT1.nii.gz + ${CMAKE_CURRENT_BINARY_DIR}/cuberille-brain.off + --iso-surface-value 147.5 +) \ No newline at end of file diff --git a/wasm/cuberille/cuberille.cxx b/wasm/cuberille/cuberille.cxx new file mode 100644 index 0000000..87c9f78 --- /dev/null +++ b/wasm/cuberille/cuberille.cxx @@ -0,0 +1,167 @@ +/*========================================================================= + + * Copyright NumFOCUS + * + * Licensed under the Apache License, Version 2.0 (the "License"); + * you may not use this file except in compliance with the License. + * You may obtain a copy of the License at + * + * https://www.apache.org/licenses/LICENSE-2.0.txt + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + * + *=========================================================================*/ + +#include "itkMesh.h" + +#include "itkMeshJSON.h" +#include "itkPipeline.h" +#include "itkInputImage.h" +#include "itkOutputMesh.h" +#include "itkSupportInputImageTypes.h" + +#include "itkCuberilleImageToMeshFilter.h" +#include "itkLinearInterpolateImageFunction.h" +#include "itkBSplineInterpolateImageFunction.h" +#include "itkWindowedSincInterpolateImageFunction.h" + +template +int cuberilleWithInterpolator(itk::wasm::Pipeline & pipeline, const TImage * image) +{ + using ImageType = TImage; + using MeshType = TMesh; + using InterpolatorType = TInterpolator; + + pipeline.get_option("image")->required()->type_name("INPUT_IMAGE"); + + double isoSurfaceValue = 1.0; + pipeline.add_option("--iso-surface-value", isoSurfaceValue, "Value of the iso-surface for which to generate the mesh. Pixels equal to or greater than this value are considered to lie on the surface or inside the resultant mesh."); + + bool quadrilateralFaces = false; + pipeline.add_flag("--quadrilateral-faces", quadrilateralFaces, "Generate quadrilateral faces instead of triangle faces."); + + bool verticesNotProjectedToIsoSurface = false; + pipeline.add_flag("--no-projection", verticesNotProjectedToIsoSurface, "Do not project the vertices to the iso-surface."); + + bool imagePixelToCellData = false; + pipeline.add_flag("--image-pixel-to-cell-data", imagePixelToCellData, "Whether the adjacent input pixel value should be saved as cell data in the output mesh."); + + double projectVertexSurfaceDistanceThreshold = 0.01; + pipeline.add_option("--surface-distance-threshold", projectVertexSurfaceDistanceThreshold, "Threshold for the distance from the rface during vertex projection in pixel units. Smaller is smoother but takes longer."); + + double projectVertexStepLength = -1.0; + pipeline.add_option("--step-length", projectVertexStepLength, "Initial step length for vertex projection in physical units. Default is max spacing * 0.35."); + + double projectVertexStepLengthRelaxationFactor = 0.75; + pipeline.add_option("--step-relaxation-factor", projectVertexStepLengthRelaxationFactor, "The step length relaxation factor during vertex projection. The step length is multiplied by this factor each iteration to allow convergence, [0.0, 1.0].")->check(CLI::Range(0.0, 1.0)); + + uint32_t projectVertexMaximumNumberOfSteps = 150; + pipeline.add_option("--maximum-steps", projectVertexMaximumNumberOfSteps, "The maximum number of steps used during vertex projection."); + + itk::wasm::OutputMesh mesh; + pipeline.add_option("mesh", mesh, "Output mesh.")->required()->type_name("OUTPUT_MESH"); + + ITK_WASM_PARSE(pipeline); + + using InterpolatorBaseType = itk::InterpolateImageFunction; + using CuberilleType = itk::CuberilleImageToMeshFilter; + + const auto cuberille = CuberilleType::New(); + + const auto interpolator = InterpolatorType::New(); + interpolator->SetInputImage(image); + cuberille->SetInterpolator(interpolator); + + cuberille->SetInput(image); + cuberille->SetIsoSurfaceValue(isoSurfaceValue); + cuberille->SetGenerateTriangleFaces(!quadrilateralFaces); + cuberille->SetProjectVerticesToIsoSurface(!verticesNotProjectedToIsoSurface); + cuberille->SetSavePixelAsCellData(imagePixelToCellData); + cuberille->SetProjectVertexSurfaceDistanceThreshold(projectVertexSurfaceDistanceThreshold); + if (projectVertexStepLength > 0.0) + { + cuberille->SetProjectVertexStepLength(projectVertexStepLength); + } + else + { + cuberille->SetProjectVertexStepLength(image->GetSpacing().GetVnlVector().max_value() * 0.35); + } + cuberille->SetProjectVertexStepLengthRelaxationFactor(projectVertexStepLengthRelaxationFactor); + cuberille->SetProjectVertexMaximumNumberOfSteps(projectVertexMaximumNumberOfSteps); + + ITK_WASM_CATCH_EXCEPTION(pipeline, cuberille->Update()); + + const typename MeshType::ConstPointer outputMesh = cuberille->GetOutput(); + mesh.Set(outputMesh); + + return EXIT_SUCCESS; +} + +template +int cuberille(itk::wasm::Pipeline &pipeline, const TImage * image) +{ + using ImageType = TImage; + constexpr unsigned int Dimension = ImageType::ImageDimension; + using PixelType = typename ImageType::PixelType; + using MeshType = itk::Mesh; + + std::string interpolationMethod = "linear"; + pipeline.add_option("--interpolator", interpolationMethod, "Interpolation method to use for the image. Valid values: linear, bspline, windowed-sync.")->check(CLI::IsMember({"linear", "bspline", "windowed-sinc"})); + + ITK_WASM_PRE_PARSE(pipeline); + + if (interpolationMethod == "linear") + { + using InterpolatorType = itk::LinearInterpolateImageFunction; + return cuberilleWithInterpolator(pipeline, image); + } + else if (interpolationMethod == "bspline") + { + using InterpolatorType = itk::BSplineInterpolateImageFunction; + return cuberilleWithInterpolator(pipeline, image); + } + else if (interpolationMethod == "windowed-sinc") + { + constexpr unsigned int VRadius = 3; + using InterpolatorType = itk::WindowedSincInterpolateImageFunction; + return cuberilleWithInterpolator(pipeline, image); + } + else + { + std::ostringstream ostrm; + ostrm << "Unknown interpolation method: " << interpolationMethod; + CLI::Error err("Runtime error", ostrm.str(), 1); + return pipeline.exit(err); + } +} + +template +class PipelineFunctor +{ +public: + int operator()(itk::wasm::Pipeline &pipeline) + { + using ImageType = TImage; + + itk::wasm::InputImage image; + pipeline.add_option("image", image, "Input image")->type_name("INPUT_IMAGE"); + + ITK_WASM_PRE_PARSE(pipeline); + + typename ImageType::ConstPointer imageRef = image.Get(); + return cuberille(pipeline, imageRef); + } +}; + +int main(int argc, char * argv[]) +{ + itk::wasm::Pipeline pipeline("cuberille", "Create a mesh from an image via cuberille implicit surface polygonization.", argc, argv); + + return itk::wasm::SupportInputImageTypes + ::Dimensions<2U, 3U>("image", pipeline); +} diff --git a/wasm/itk_wasm_env.bash b/wasm/itk_wasm_env.bash new file mode 100644 index 0000000..a4df02c --- /dev/null +++ b/wasm/itk_wasm_env.bash @@ -0,0 +1,25 @@ +#!/usr/bin/env bash + +function die() { + echo "$1" + exit 1 +} + +export ITK_WASM_TEST_DATA_HASH=${ITK_WASM_TEST_DATA_HASH:-$(cat package.json | jq -e -r '."itk-wasm"."test-data-hash"')} +export ITK_WASM_TEST_DATA_URLS=${ITK_WASM_TEST_DATA_URLS:-$(cat package.json | jq -e -r '."itk-wasm"."test-data-urls" | join(" ")')} + +export ITK_WASM_ITK_REPOSITORY=${ITK_WASM_ITK_REPOSITORY:-"https://github.com/thewtex/ITK"} +export ITK_WASM_ITK_BRANCH=${ITK_WASM_ITK_BRANCH:-"itkwasm-2024-05-20-5db055d7ad3b-4"} + +export ITK_WASM_NATIVE_WORKSPACE=${ITK_WASM_NATIVE_WORKSPACE:-$(pwd)/native} + +export ITK_WASM_ITK_SOURCE_DIR=${ITK_WASM_ITK_SOURCE_DIR:-${ITK_WASM_NATIVE_WORKSPACE}/ITK} +export ITK_WASM_ITK_BUILD_DIR=${ITK_WASM_ITK_BUILD_DIR:-${ITK_WASM_NATIVE_WORKSPACE}/ITK-build} +mkdir -p ${ITK_WASM_ITK_BUILD_DIR} || die "Could not create ITK build directory" + +export ITK_WASM_WEBASSEMBLY_INTERFACE_REPOSITORY=${ITK_WASM_WEBASSEMBLY_INTERFACE_REPOSITORY:-"https://github.com/InsightSoftwareConsortium/ITK-Wasm"} +export ITK_WASM_WEBASSEMBLY_INTERFACE_BRANCH=${ITK_WASM_WEBASSEMBLY_INTERFACE_BRANCH:-"main"} + +export ITK_WASM_WEBASSEMBLY_INTERFACE_SOURCE_DIR=${ITK_WASM_WEBASSEMBLY_INTERFACE_SOURCE_DIR:-${ITK_WASM_NATIVE_WORKSPACE}/ITK-Wasm} +export ITK_WASM_WEBASSEMBLY_INTERFACE_BUILD_DIR=${ITK_WASM_WEBASSEMBLY_INTERFACE_BUILD_DIR:-${ITK_WASM_NATIVE_WORKSPACE}/ITK-Wasm-build} +mkdir -p ${ITK_WASM_WEBASSEMBLY_INTERFACE_BUILD_DIR} || die "Could not create ITK-Wasm build directory"