From e6c1f9405f1be38f6798bd4c926b335f43bffa9e Mon Sep 17 00:00:00 2001 From: Indrajeet Patil Date: Mon, 19 Feb 2024 08:41:12 +0100 Subject: [PATCH] Bump `{withr}` and workflow versions (#264) * bump withr * bump Pandoc * bump easystats * import the whole of effectsize unclear why the functions don't work locally if this is not the case * Apply automatic changes * another bump --------- Co-authored-by: IndrajeetPatil --- .github/workflows/R-CMD-check-devel.yaml | 2 +- .github/workflows/R-CMD-check-hard.yaml | 2 +- .github/workflows/R-CMD-check-strict.yaml | 2 +- .github/workflows/R-CMD-check.yaml | 6 ++--- .github/workflows/check-link-rot.yaml | 2 +- .github/workflows/check-readme.yaml | 2 +- .github/workflows/check-spelling.yaml | 2 +- .../workflows/check-vignette-warnings.yaml | 2 +- .github/workflows/pkgdown-no-suggests.yaml | 2 +- .github/workflows/pkgdown.yaml | 2 +- .github/workflows/pre-commit.yaml | 4 +-- CITATION.cff | 27 +++++++++++-------- DESCRIPTION | 12 ++++----- NAMESPACE | 1 + R/globals.R | 1 - R/statsExpressions-package.R | 1 + codemeta.json | 13 ++++----- 17 files changed, 45 insertions(+), 38 deletions(-) diff --git a/.github/workflows/R-CMD-check-devel.yaml b/.github/workflows/R-CMD-check-devel.yaml index 748e5858..263e475b 100644 --- a/.github/workflows/R-CMD-check-devel.yaml +++ b/.github/workflows/R-CMD-check-devel.yaml @@ -20,7 +20,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/R-CMD-check-hard.yaml b/.github/workflows/R-CMD-check-hard.yaml index 59fde76b..93b98885 100644 --- a/.github/workflows/R-CMD-check-hard.yaml +++ b/.github/workflows/R-CMD-check-hard.yaml @@ -27,7 +27,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/R-CMD-check-strict.yaml b/.github/workflows/R-CMD-check-strict.yaml index 72ae6a8f..45747d45 100644 --- a/.github/workflows/R-CMD-check-strict.yaml +++ b/.github/workflows/R-CMD-check-strict.yaml @@ -40,7 +40,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index 68146fef..fe9ffa88 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -21,13 +21,13 @@ jobs: # Checks are not run on R-devel because they are already run in # `R-CMD-check-strict` workflow - #- { os: macos-latest, r: 'devel' } + #- { os: macos-latest, r: "devel" } #- { os: macos-latest, r: "release" } - { os: macos-latest, r: "oldrel-1" } #- { os: windows-latest, r: "devel" } - { os: windows-latest, r: "release" } - #- { os: windows-latest, r: "oldrel-1" } + - { os: windows-latest, r: "oldrel-1" } #- { os: ubuntu-latest, r: "devel" } - { os: ubuntu-latest, r: "release" } @@ -42,7 +42,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/check-link-rot.yaml b/.github/workflows/check-link-rot.yaml index 0452beb6..7d5a0e2e 100644 --- a/.github/workflows/check-link-rot.yaml +++ b/.github/workflows/check-link-rot.yaml @@ -21,7 +21,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/check-readme.yaml b/.github/workflows/check-readme.yaml index 359148b6..dc9cf2cd 100644 --- a/.github/workflows/check-readme.yaml +++ b/.github/workflows/check-readme.yaml @@ -30,7 +30,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/check-spelling.yaml b/.github/workflows/check-spelling.yaml index 843015ec..3b862c34 100644 --- a/.github/workflows/check-spelling.yaml +++ b/.github/workflows/check-spelling.yaml @@ -21,7 +21,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/check-vignette-warnings.yaml b/.github/workflows/check-vignette-warnings.yaml index 630bcad8..cd929ac4 100644 --- a/.github/workflows/check-vignette-warnings.yaml +++ b/.github/workflows/check-vignette-warnings.yaml @@ -22,7 +22,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/pkgdown-no-suggests.yaml b/.github/workflows/pkgdown-no-suggests.yaml index ed331237..cc845710 100644 --- a/.github/workflows/pkgdown-no-suggests.yaml +++ b/.github/workflows/pkgdown-no-suggests.yaml @@ -25,7 +25,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index 9a5442a0..ff6fbbe4 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -24,7 +24,7 @@ jobs: - uses: r-lib/actions/setup-pandoc@v2 with: - pandoc-version: "3.1.11.1" + pandoc-version: "3.1.12.1" - uses: r-lib/actions/setup-r@v2 with: diff --git a/.github/workflows/pre-commit.yaml b/.github/workflows/pre-commit.yaml index 97b4e39e..f8e4d984 100644 --- a/.github/workflows/pre-commit.yaml +++ b/.github/workflows/pre-commit.yaml @@ -15,7 +15,7 @@ jobs: ) steps: - name: Cancel Previous Runs - uses: styfle/cancel-workflow-action@0.12.0 + uses: styfle/cancel-workflow-action@0.12.1 with: access_token: ${{ github.token }} @@ -30,7 +30,7 @@ jobs: architecture: "x64" - name: Run pre-commit - uses: pre-commit/action@v3.0.0 + uses: pre-commit/action@v3.0.1 - name: Commit files if: failure() && startsWith(github.ref, 'refs/heads') diff --git a/CITATION.cff b/CITATION.cff index 510f510f..563f6d94 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -8,7 +8,7 @@ message: 'To cite package "statsExpressions" in publications use:' type: software license: GPL-3.0-only title: 'statsExpressions: Tidy Dataframes and Expressions with Statistical Details' -version: 1.5.3 +version: 1.5.3.9000 doi: 10.21105/joss.03236 abstract: 'Utilities for producing dataframes with rich details for the most common types of statistical approaches and tests: parametric, nonparametric, robust, and @@ -259,7 +259,7 @@ references: abstract: 'insight: Easy Access to Model Information for Various Model Objects' notes: Imports url: https://easystats.github.io/insight/ - repository: https://easystats.r-universe.dev + repository: https://CRAN.R-project.org/package=insight authors: - family-names: Lüdecke given-names: Daniel @@ -294,7 +294,7 @@ references: email: etienne.bacher@protonmail.com orcid: https://orcid.org/0000-0002-9271-5075 year: '2024' - version: '>= 0.19.7' + version: '>= 0.19.8' - type: software title: magrittr abstract: 'magrittr: A Forward-Pipe Operator for R' @@ -314,7 +314,7 @@ references: abstract: 'parameters: Processing of Model Parameters' notes: Imports url: https://easystats.github.io/parameters/ - repository: https://easystats.r-universe.dev + repository: https://CRAN.R-project.org/package=parameters authors: - family-names: Lüdecke given-names: Daniel @@ -340,13 +340,13 @@ references: email: brenton@wiernik.org orcid: https://orcid.org/0000-0001-9560-6336 year: '2024' - version: '>= 0.21.3' + version: '>= 0.21.5' - type: software title: performance abstract: 'performance: Assessment of Regression Models Performance' notes: Imports url: https://easystats.github.io/performance/ - repository: https://easystats.r-universe.dev + repository: https://CRAN.R-project.org/package=performance authors: - family-names: Lüdecke given-names: Daniel @@ -372,8 +372,12 @@ references: given-names: Brenton M. email: brenton@wiernik.org orcid: https://orcid.org/0000-0001-9560-6336 - year: '2024' + - family-names: Thériault + given-names: Rémi + email: remi.theriault@mail.mcgill.ca + orcid: https://orcid.org/0000-0003-4315-6788 version: '>= 0.10.8' + year: '2024' - type: software title: PMCMRplus abstract: 'PMCMRplus: Calculate Pairwise Multiple Comparisons of Mean Rank Sums @@ -459,7 +463,7 @@ references: - family-names: Girlich given-names: Maximilian year: '2024' - version: '>= 1.3.0' + version: '>= 1.3.1' - type: software title: withr abstract: 'withr: Run Code ''With'' Temporarily Modified Global State' @@ -480,10 +484,11 @@ references: email: kevinushey@gmail.com - family-names: Wickham given-names: Hadley - email: hadley@rstudio.com + email: hadley@posit.co - family-names: Chang given-names: Winston year: '2024' + version: '>= 3.0.0' - type: software title: WRS2 abstract: 'WRS2: A Collection of Robust Statistical Methods' @@ -514,7 +519,7 @@ references: abstract: 'bayestestR: Understand and Describe Bayesian Models and Posterior Distributions' notes: Suggests url: https://easystats.github.io/bayestestR/ - repository: https://easystats.r-universe.dev + repository: https://CRAN.R-project.org/package=bayestestR authors: - family-names: Makowski given-names: Dominique @@ -541,7 +546,7 @@ references: email: brenton@wiernik.org orcid: https://orcid.org/0000-0001-9560-6336 year: '2024' - version: '>= 0.13.1' + version: '>= 0.13.2' - type: software title: ggplot2 abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics' diff --git a/DESCRIPTION b/DESCRIPTION index 7029477e..d4551769 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -32,21 +32,21 @@ Imports: dplyr (>= 1.1.4), effectsize (>= 0.8.6), glue, - insight (>= 0.19.7), + insight (>= 0.19.8), magrittr, - parameters (>= 0.21.3), + parameters (>= 0.21.5), performance (>= 0.10.8), PMCMRplus, purrr (>= 1.0.2), rlang, stats, tibble (>= 3.2.1), - tidyr (>= 1.3.0), - withr, + tidyr (>= 1.3.1), + withr (>= 3.0.0), WRS2, zeallot Suggests: - bayestestR (>= 0.13.1), + bayestestR (>= 0.13.2), ggplot2, knitr, metaBMA, @@ -66,7 +66,7 @@ Roxygen: list( markdown = TRUE, roclets = c("collate", "namespace", "rd", "pkgapi::api_roclet", "roxyglobals::global_roclet") ) -RoxygenNote: 7.3.0 +RoxygenNote: 7.3.1 Config/testthat/edition: 3 Config/testthat/parallel: true Config/Needs/check: anthonynorth/roxyglobals diff --git a/NAMESPACE b/NAMESPACE index 56b494f0..5220c5d7 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -21,6 +21,7 @@ export(tidy_model_expressions) export(tidy_model_parameters) export(two_sample_test) import(dplyr) +import(effectsize) import(glue) import(rlang) importFrom(insight,check_if_installed) diff --git a/R/globals.R b/R/globals.R index 3605414c..6f260aa0 100644 --- a/R/globals.R +++ b/R/globals.R @@ -2,7 +2,6 @@ utils::globalVariables(c( "method", # - "effectsize", # "n.obs", # "df", # "n.obs", # diff --git a/R/statsExpressions-package.R b/R/statsExpressions-package.R index 23fa60be..a26c3379 100644 --- a/R/statsExpressions-package.R +++ b/R/statsExpressions-package.R @@ -20,6 +20,7 @@ #' @import rlang #' @import dplyr #' @import glue +#' @import effectsize #' #' @importFrom insight format_value check_if_installed standardize_names #' @importFrom parameters model_parameters diff --git a/codemeta.json b/codemeta.json index 642ebb04..2171c11e 100644 --- a/codemeta.json +++ b/codemeta.json @@ -8,7 +8,7 @@ "codeRepository": "https://github.com/IndrajeetPatil/statsExpressions", "issueTracker": "https://github.com/IndrajeetPatil/statsExpressions/issues", "license": "https://spdx.org/licenses/GPL-3.0", - "version": "1.5.3", + "version": "1.5.3.9000", "programmingLanguage": { "@type": "ComputerLanguage", "name": "R", @@ -53,7 +53,7 @@ "@type": "SoftwareApplication", "identifier": "bayestestR", "name": "bayestestR", - "version": ">= 0.13.1", + "version": ">= 0.13.2", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -278,7 +278,7 @@ "@type": "SoftwareApplication", "identifier": "insight", "name": "insight", - "version": ">= 0.19.7", + "version": ">= 0.19.8", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -303,7 +303,7 @@ "@type": "SoftwareApplication", "identifier": "parameters", "name": "parameters", - "version": ">= 0.21.3", + "version": ">= 0.21.5", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -384,7 +384,7 @@ "@type": "SoftwareApplication", "identifier": "tidyr", "name": "tidyr", - "version": ">= 1.3.0", + "version": ">= 1.3.1", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -397,6 +397,7 @@ "@type": "SoftwareApplication", "identifier": "withr", "name": "withr", + "version": ">= 3.0.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -431,7 +432,7 @@ }, "SystemRequirements": null }, - "fileSize": "4131.335KB", + "fileSize": "4131.204KB", "citation": [ { "@type": "ScholarlyArticle",