From c731f16a6ec275bff27a340b2fbaf6559f67be2e Mon Sep 17 00:00:00 2001
From: tina <15641075+tinavisnovska@users.noreply.github.com>
Date: Tue, 27 Feb 2024 14:44:38 +0100
Subject: [PATCH] Upgraded pandas back to 2.2.0, relaxed python requirements to
 >= 3.9 with a python-version matrix.

---
 .github/workflows/main.yml | 23 ++++++++++++++++++++---
 README.md                  |  4 ++--
 requirements.txt           |  2 +-
 3 files changed, 23 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
index ee225d4..1fab154 100644
--- a/.github/workflows/main.yml
+++ b/.github/workflows/main.yml
@@ -13,15 +13,32 @@ jobs:
   test:
     name: Run unit tests
     runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
+
     steps:
       - 
         name: Check out the repo
         uses: actions/checkout@v4
       - 
-        name: Unit testing 
-        uses: fylein/python-pytest-github-action@v2
+        name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
         with:
-          args: pip3 install -r requirements.txt && pytest
+          python-version: ${{ matrix.python-version }}
+      -
+        name: Install dependencies
+        run: pip3 install pytest pytest-md pytest-emoji && pip3 install -r requirements.txt
+      -
+        name: Unit testing
+        uses: pavelzw/pytest-action@v2
+        with:
+          emoji: false
+          verbose: false
+          job-summary: true
+
+
   build:
     name: Build Image
     runs-on: ubuntu-latest
diff --git a/README.md b/README.md
index fb16fdd..daf698b 100644
--- a/README.md
+++ b/README.md
@@ -15,8 +15,8 @@ Running LocalApp analysis requires a samplesheet in a specific format consistent
 
 ## Dependencies
 
-- python3>=3.11.4, 
-- pandas>=2.2.0
+- python3>=3.9, 
+- pandas==2.2.0
 
 
 ## Description of Input Parameters
diff --git a/requirements.txt b/requirements.txt
index 416be5a..105ee69 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1 +1 @@
-pandas==1.3.5
+pandas==2.2.0