diff --git a/README.md b/README.md index 87cefe0..5b24006 100644 --- a/README.md +++ b/README.md @@ -66,7 +66,8 @@ Run PRONTO with docker image: "$InPreD_PRONTO_metadata_file" is your local InPreD meta data file which contains clinical data for samples. "$pronto_output_dir" is the path in your local environment to store the reports generated by PRONTO. -NB: Running PRONTO with docker, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file. +NB: +Running PRONTO with docker, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file. Please keep the "data_path =/pronto/tsoppi_data" in Config/configure_PRONTO.ini. # PRONTO Singularity @@ -82,5 +83,6 @@ Run PRONTO image with Singularity: "$InPreD_PRONTO_metadata_file" is your local InPreD meta data file which contains clinical data for samples. "$pronto_output_dir" is the path in your local environment to store the reports generated by PRONTO.py. -NB: Running PRONTO with singularity, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file. +NB: +Running PRONTO with singularity, you only need to modify the "inpred_node = " in Config/configure_PRONTO.ini file. Please keep the "data_path =/pronto/tsoppi_data" in Config/configure_PRONTO.ini.