diff --git a/workflow/rules/variant_report.smk b/workflow/rules/variant_report.smk index 853790761..1b002c1a1 100644 --- a/workflow/rules/variant_report.smk +++ b/workflow/rules/variant_report.smk @@ -7,6 +7,7 @@ rule vcf_report: input: ref="resources/genomes/main.fasta", + index="resources/genomes/main.fasta.fai", bams=get_report_input("results/{date}/recal/ref~main/{sample}.bam"), bais=get_report_input("results/{date}/recal/ref~main/{sample}.bam.bai"), bcfs=get_report_input(