From b886ad38bb20d6a894231dddc66dbc5014a51cbc Mon Sep 17 00:00:00 2001 From: Alex Thomas Date: Mon, 19 Aug 2024 15:26:11 +0000 Subject: [PATCH] change input name --- workflow/rules/strain_calling.smk | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/rules/strain_calling.smk b/workflow/rules/strain_calling.smk index 3acf562a..88d8a603 100644 --- a/workflow/rules/strain_calling.smk +++ b/workflow/rules/strain_calling.smk @@ -141,7 +141,7 @@ rule kallisto_plot_all_strains: rule pangolin_call_strains: input: contigs=get_pangolin_input, - update="results/{date}/pangolin/pangolin-data.log", + data="results/{date}/pangolin/pangolin-data.log", output: "results/{date}/tables/strain-calls/{sample}.{stage}.strains.pangolin.csv", log: