From 1aea9a67c9866fac554fb3fed9c5563e67f89558 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 24 Oct 2023 14:59:06 +0000 Subject: [PATCH] chore(deps): bump snakemake/snakemake-github-action Bumps [snakemake/snakemake-github-action](https://github.com/snakemake/snakemake-github-action) from 1.24.0 to 1.25.1. - [Release notes](https://github.com/snakemake/snakemake-github-action/releases) - [Changelog](https://github.com/snakemake/snakemake-github-action/blob/master/CHANGELOG.md) - [Commits](https://github.com/snakemake/snakemake-github-action/compare/v1.24.0...v1.25.1) --- updated-dependencies: - dependency-name: snakemake/snakemake-github-action dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] --- .github/workflows/main.yml | 10 +++++----- .github/workflows/release-please.yml | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index e7c07708..82a37316 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -41,7 +41,7 @@ jobs: steps: - uses: actions/checkout@v2 - name: Lint workflow - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: . snakefile: workflow/Snakefile @@ -134,14 +134,14 @@ jobs: curl "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=MZ314997.1&rettype=fasta" | sed '$ d' > .tests/resources/genomes/B.1.1.7.fasta curl "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=MZ314998.1&rettype=fasta" | sed '$ d' > .tests/resources/genomes/B.1.351.fasta - name: Test rule ${{ matrix.rule }} on ${{ matrix.technology }} ${{ matrix.seq_method }} data - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: .tests snakefile: workflow/Snakefile args: "-pr --use-conda --show-failed-logs --cores 2 --resources ncbi_api_requests=1 --conda-cleanup-pkgs cache --conda-frontend mamba ${{ matrix.rule }}" - name: Test report - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 if: startsWith(matrix.rule, 'all -npr') != true with: directory: .tests @@ -312,14 +312,14 @@ jobs: curl "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=MZ314997.1&rettype=fasta" | sed '$ d' > .tests/resources/genomes/B.1.1.7.fasta curl "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&id=MZ314998.1&rettype=fasta" | sed '$ d' > .tests/resources/genomes/B.1.351.fasta - name: Test rule ${{ matrix.rule }} - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: .tests snakefile: workflow/Snakefile args: "-pr --use-conda --show-failed-logs --cores 2 --resources ncbi_api_requests=1 --conda-cleanup-pkgs cache --conda-frontend mamba ${{ matrix.rule }}" - name: Test report - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 if: startsWith(matrix.rule, 'all -npr') != true with: directory: .tests diff --git a/.github/workflows/release-please.yml b/.github/workflows/release-please.yml index 2c4b823d..4811207a 100644 --- a/.github/workflows/release-please.yml +++ b/.github/workflows/release-please.yml @@ -111,7 +111,7 @@ jobs: - name: Create Dockerfile if: ${{ steps.release.outputs.release_created == 'true' }} - uses: snakemake/snakemake-github-action@v1.24.0 + uses: snakemake/snakemake-github-action@v1.25.1 with: directory: . snakefile: workflow/Snakefile