From 077b80d2b2b00026fc9944a26c0183505f9060cf Mon Sep 17 00:00:00 2001
From: Thomas Battenfeld <46334240+thomasbtf@users.noreply.github.com>
Date: Mon, 3 Jan 2022 14:18:15 +0100
Subject: [PATCH] fix: generate high quality report .csv file (#433)

---
 workflow/scripts/generate-high-quality-report.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/workflow/scripts/generate-high-quality-report.py b/workflow/scripts/generate-high-quality-report.py
index afe721867..61bda50c0 100644
--- a/workflow/scripts/generate-high-quality-report.py
+++ b/workflow/scripts/generate-high-quality-report.py
@@ -57,7 +57,8 @@
     )
 
     # Only include samples with include flag
-    csv_table = csv_table[csv_table["include"] == "1"]
+    csv_table["include"] = csv_table["include"].astype(int)
+    csv_table = csv_table[csv_table["include"] == 1]
     csv_table.drop(columns=["include"], inplace=True)
 
     # Final touches