diff --git a/instat/instat.vbproj b/instat/instat.vbproj index 1b388d607cf..d4c543012a2 100644 --- a/instat/instat.vbproj +++ b/instat/instat.vbproj @@ -4827,7 +4827,7 @@ PreserveNewest - + PreserveNewest @@ -4887,7 +4887,7 @@ PreserveNewest - + PreserveNewest @@ -4896,7 +4896,7 @@ PreserveNewest - + PreserveNewest @@ -4953,9 +4953,6 @@ PreserveNewest - - PreserveNewest - PreserveNewest @@ -4965,7 +4962,7 @@ PreserveNewest - + PreserveNewest @@ -4974,7 +4971,7 @@ PreserveNewest - + PreserveNewest @@ -5010,7 +5007,7 @@ PreserveNewest - + PreserveNewest @@ -5052,6 +5049,9 @@ PreserveNewest + + PreserveNewest + PreserveNewest @@ -5061,10 +5061,10 @@ PreserveNewest - + PreserveNewest - + PreserveNewest @@ -5088,6 +5088,9 @@ PreserveNewest + + PreserveNewest + PreserveNewest @@ -5163,7 +5166,7 @@ PreserveNewest - + PreserveNewest @@ -5229,7 +5232,7 @@ PreserveNewest - + PreserveNewest @@ -5277,7 +5280,7 @@ PreserveNewest - + PreserveNewest @@ -5316,7 +5319,7 @@ PreserveNewest - + PreserveNewest @@ -5340,7 +5343,7 @@ PreserveNewest - + PreserveNewest @@ -5445,7 +5448,7 @@ PreserveNewest - + PreserveNewest @@ -5469,7 +5472,7 @@ PreserveNewest - + PreserveNewest @@ -5487,10 +5490,10 @@ PreserveNewest - + PreserveNewest - + PreserveNewest @@ -5499,7 +5502,7 @@ PreserveNewest - + PreserveNewest @@ -5511,10 +5514,10 @@ PreserveNewest - + PreserveNewest - + PreserveNewest @@ -5577,6 +5580,9 @@ PreserveNewest + + PreserveNewest + PreserveNewest @@ -5586,13 +5592,13 @@ PreserveNewest - + PreserveNewest PreserveNewest - + PreserveNewest diff --git a/instat/static/InstatObject/R/Rsetup.R b/instat/static/InstatObject/R/Rsetup.R index f0e41563698..2b2d62d5b09 100644 --- a/instat/static/InstatObject/R/Rsetup.R +++ b/instat/static/InstatObject/R/Rsetup.R @@ -3,21 +3,21 @@ # Packages including dependencies (generated from miniCRAN package) packs <- c("abind", "acepack", "agricolae", "agridat", "AlgDesign", "arm", "assertthat", "backports", "base64enc", "bayesplot", "BH", - "bindr", "bindrcpp", "bitops", "blme", "boot", "broom", "candisc", - "car", "carData", "caTools", "cellranger", "checkmate", "chron", - "circlize", "CircStats", "circular", "class", "classInt", "cli", - "clifro", "climdex.pcic", "cluster", "cmsaf", "coda", "codetools", - "coin", "colorRamps", "colorspace", "combinat", "cowplot", "crayon", + "bindr", "bindrcpp", "bitops", "boot", "broom", "candisc", "car", + "carData", "caTools", "cellranger", "checkmate", "chron", "circlize", + "CircStats", "circular", "class", "classInt", "cli", "clifro", + "climdex.pcic", "cluster", "cmsaf", "coda", "codetools", "coin", + "colorRamps", "colorspace", "combinat", "cowplot", "crayon", "crosstalk", "curl", "DAAG", "dae", "data.table", "DBI", "deldir", - "dendextend", "DEoptimR", "devtools", "dichromat", "digest", - "diptest", "distillery", "dotCall64", "dplyr", "DT", "dummies", - "e1071", "effects", "ellipse", "emmeans", "EnvStats", "estimability", - "evaluate", "Evapotranspiration", "expm", "extRemes", "factoextra", - "FactoMineR", "faraway", "fields", "fitdistrplus", "flashClust", - "flexmix", "forcats", "foreach", "foreign", "Formula", "fpc", - "gapminder", "gdata", "gdtools", "getPass", "GGally", "ggdendro", - "ggeffects", "ggformula", "ggfortify", "ggplot2", "ggpubr", "ggrepel", - "ggridges", "ggsci", "ggsignif", "ggthemes", "git2r", "glmmTMB", + "dendextend", "DEoptimR", "devtools", "digest", "diptest", "distillery", + "dotCall64", "dplyr", "dummies", "e1071", "effects", "ellipse", + "emmeans", "EnvStats", "estimability", "evaluate", "Evapotranspiration", + "expm", "extRemes", "factoextra", "FactoMineR", "fansi", "faraway", + "fields", "fitdistrplus", "flashClust", "flexmix", "forcats", + "foreach", "foreign", "Formula", "fpc", "gapminder", "gdata", + "gdtools", "geosphere", "getPass", "GGally", "ggdendro", "ggeffects", + "ggformula", "ggfortify", "ggplot2", "ggpubr", "ggrepel", "ggridges", + "ggsci", "ggsignif", "ggstance", "ggthemes", "git2r", "glmmTMB", "GlobalOptions", "glue", "gmodels", "goftest", "gplots", "gridExtra", "gtable", "gtools", "haven", "heplots", "hexbin", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "httpuv", "httr", @@ -26,8 +26,8 @@ packs <- c("abind", "acepack", "agricolae", "agridat", "AlgDesign", "latticeExtra", "lazyeval", "leaps", "LearnBayes", "lme4", "lmomco", "Lmoments", "lmtest", "lubridate", "magrittr", "mapdata", "mapproj", "maps", "maptools", "markdown", "MASS", "Matrix", "MatrixModels", - "mclust", "memoise", "merTools", "mgcv", "mime", "miniUI", "minqa", - "mnormt", "modelr", "modeltools", "mosaic", "mosaicCore", "mosaicData", + "mclust", "memoise", "mgcv", "mime", "miniUI", "minqa", "mnormt", + "modelr", "modeltools", "mosaic", "mosaicCore", "mosaicData", "multcomp", "munsell", "mvtnorm", "ncdf.tools", "ncdf4.helpers", "ncdf4", "nlme", "nloptr", "nnet", "nortest", "nycflights13", "openair", "openssl", "openxlsx", "pbkrtest", "PCICt", "pillar", @@ -38,53 +38,53 @@ packs <- c("abind", "acepack", "agricolae", "agridat", "AlgDesign", "RCurl", "readr", "readxl", "rematch", "reshape", "reshape2", "rio", "rje", "rlang", "rlist", "RMySQL", "RNetCDF", "robustbase", "rpart", "rrefine", "rstudioapi", "rtf", "rworldmap", "rworldxtra", - "sandwich", "scales", "scatterplot3d", "selectr", "shape", "shiny", + "sandwich", "scales", "scatterplot3d", "sf", "shape", "shiny", "signmedian.test", "sjlabelled", "sjmisc", "sjPlot", "sjstats", "snakecase", "sourcetools", "sp", "spam", "SparseM", "spData", "spdep", "SPEI", "stringdist", "stringi", "stringr", "survey", "survival", "svglite", "TH.data", "tibble", "tidyr", "tidyselect", - "TMB", "trimcluster", "utf8", "viridis", "viridisLite", "visreg", - "wakefield", "whisker", "withr", "XML", "xtable", "yaml", "zip", - "zoo") + "TMB", "trimcluster", "units", "utf8", "viridis", "viridisLite", + "visreg", "wakefield", "weathermetrics", "whisker", "withr", + "XML", "xml2", "xtable", "yaml", "zip", "zoo") -versions <- c("1.4-5", "1.4.1", "1.2-8", "1.13", "1.1-7.3", "1.10-1", - "0.2.0", "1.1.2", "0.1-3", "1.5.0", "1.66.0-1", "0.1.1", "0.2.2", - "1.0-6", "1.0-4", "1.3-20", "0.4.4", "0.8-0", "3.0-0", "3.0-1", - "1.17.1", "1.1.0", "1.8.5", "2.3-52", "0.4.4", "0.2-4", "0.4-93", - "7.3-14", "0.2-3", "1.0.0", "3.1-5", "1.1-6", "2.0.7-1", "1.9.1", - "0.19-1", "0.2-15", "1.2-2", "2.3", "1.3-2", "0.0-8", "0.9.2", - "1.3.4", "1.0.0", "3.2", "1.22", "3.0-12", "1.11.4", "1.0.0", - "0.1-15", "1.8.0", "1.0-8", "1.13.5", "2.0-0", "0.6.15", "0.75-7", - "1.0-4", "0.9-5.2", "0.7.5", "0.4", "1.5.6", "1.6-8", "4.0-1", - "0.4.1", "1.2.1", "2.3.0", "1.3", "0.10.1", "1.12", "0.999-2", - "2.0-9", "1.0.5", "1.41", "1.0.7", "9.6", "1.0-9", "1.01-2", - "2.3-14", "0.3.0", "1.4.4", "0.8-70", "1.2-3", "2.1-11", "0.3.0", - "2.18.0", "0.1.7", "0.2-2", "1.4.0", "0.1-20", "0.3.4", "0.7.0", - "0.4.5", "2.2.1", "0.1.6", "0.8.0", "0.5.0", "2.9", "0.4.0", - "3.5.0", "0.21.0", "0.2.1.0", "0.1.0", "1.2.0", "2.16.2", "1.1-1", - "3.0.1", "2.3", "0.2.0", "3.5.0", "1.1.1", "1.3-5", "1.27.2", - "0.7", "4.1-1", "0.4.2", "1.12", "0.3.6", "1.2", "1.4.3", "1.3.1", - "1.0.9", "0.7.2.9", "1.5", "0.9-26", "2.23-15", "0.6-14", "1.20", - "0.3", "1.1.0", "6.0-0", "0.7.3", "0.20-35", "0.6-28", "0.2.1", - "3.0", "2.15.1", "1.1-17", "2.3.1", "1.2-3", "0.9-36", "1.7.4", - "1.5", "2.3.0", "1.2.6", "3.3.0", "0.9-2", "0.8", "7.3-50", "1.2-14", - "0.4-1", "5.4", "1.1.0", "0.4.1", "1.8-24", "0.5", "0.1.1.1", - "1.2.4", "1.5-5", "0.1.2", "0.2-21", "1.2.0", "0.5.0", "0.16.0", - "1.4-8", "0.5.0", "1.0-8", "0.7.1.295", "0.3-3", "1.16", "3.1-137", - "1.0.4", "7.3-12", "1.0-4", "0.2.2", "2.4-2", "1.0.1", "4.1.0", - "0.4-7", "0.5-4.1", "1.2.3", "2.0.1", "0.2.0", "4.7.1", "3.7-2", - "1.8.4", "2.2-6", "0.3.6", "1.0.2", "1.2.0", "1.0.1", "1.8.4", - "0.2.5", "1.2-2", "5.36", "0.6.2", "1.7.1", "1.22.0", "2.2.2", - "2.6-7", "1.1-2", "0.12.17", "0.3.3.4.0", "0.3.0", "1.95-4.10", - "1.1.1", "1.1.0", "1.0.1", "0.8.7", "1.4.3", "0.5.10", "1.9", - "0.2.1", "0.4.6.1", "0.10.15", "1.9-1", "0.93-0", "4.1-13", "1.0", - "0.7", "0.4-13", "1.3-6", "1.01", "2.4-0", "0.5.0", "0.3-41", - "0.4-1", "1.4.4", "1.1.0", "1.5.1", "1.0.11", "2.7.2", "2.4.1", - "0.15.0", "0.9.1", "0.1.7", "1.3-1", "2.1-4", "1.77", "0.2.9.0", - "0.7-7", "1.7", "0.9.5.1", "1.1.7", "1.3.1", "3.33-2", "2.42-3", - "1.2.1", "1.0-8", "1.4.2", "0.8.1", "0.2.4", "1.7.13", "0.1-2", - "1.1.4", "0.5.1", "0.3.0", "2.5-0", "0.3.3", "0.3-2", "2.1.2", - "3.98-1.11", "1.8-2", "2.1.19", "1.0.0", "1.8-2") +versions <- c("1.4-5", "1.4.1", "1.2-8", "1.16", "1.1-7.3", "1.10-1", + "0.2.0", "1.1.2", "0.1-3", "1.6.0", "1.66.0-1", "0.1.1", "0.2.2", + "1.0-6", "1.3-20", "0.5.0", "0.8-0", "3.0-0", "3.0-1", "1.17.1.1", + "1.1.0", "1.8.5", "2.3-52", "0.4.4", "0.2-6", "0.4-93", "7.3-14", + "0.2-3", "1.0.0", "3.2-0", "1.1-9", "2.0.7-1", "1.9.4", "0.19-1", + "0.2-15", "1.2-2", "2.3", "1.3-2", "0.0-8", "0.9.3", "1.3.4", + "1.0.0", "3.2", "1.22", "3.0-12", "1.11.4", "1.0.0", "0.1-15", + "1.8.0", "1.0-8", "1.13.6", "0.6.15", "0.75-7", "1.0-4", "1.0-0", + "0.7.6", "1.5.6", "1.7-0", "4.0-2", "0.4.1", "1.2.3", "2.3.1", + "1.3", "0.11", "1.12", "0.999-2", "2.0-9", "1.0.5", "1.41", "0.3.0", + "1.0.7", "9.6", "1.0-9", "1.01-2", "2.3-14", "0.3.0", "1.4.4", + "0.8-71", "1.2-3", "2.1-11.1", "0.3.0", "2.18.0", "0.1.7", "1.5-7", + "0.2-2", "1.4.0", "0.1-20", "0.5.0", "0.9.0", "0.4.5", "3.0.0", + "0.1.7", "0.8.0", "0.5.0", "2.9", "0.4.0", "0.3.1", "4.0.0", + "0.23.0", "0.2.2.0", "0.1.0", "1.3.0", "2.18.1", "1.1-1", "3.0.1", + "2.3", "0.2.0", "3.8.1", "1.1.2", "1.3-5", "1.27.2", "0.7", "4.1-1", + "0.4.2", "1.12", "0.3.6", "1.2", "1.4.5", "1.3.1", "1.0.10", + "0.7.2.9", "1.5", "0.9-27", "2.23-15", "0.6-14", "1.20", "0.3", + "1.1.0", "6.0-0", "0.7.3", "0.20-35", "0.6-28", "0.2.1", "3.0", + "2.15.1", "1.1-17", "2.3.1", "1.2-3", "0.9-36", "1.7.4", "1.5", + "2.3.0", "1.2.6", "3.3.0", "0.9-3", "0.8", "7.3-50", "1.2-14", + "0.4-1", "5.4.1", "1.1.0", "1.8-24", "0.5", "0.1.1.1", "1.2.4", + "1.5-5", "0.1.2", "0.2-22", "1.4.0", "0.6.0", "0.17.0", "1.4-8", + "0.5.0", "1.0-8", "0.7.1.295", "0.3-3", "1.16", "3.1-137", "1.0.4", + "7.3-12", "1.0-4", "1.0.0", "2.4-2", "1.0.2", "4.1.0", "0.4-7", + "0.5-4.1", "1.3.0", "2.0.2", "0.2.0", "4.8.0", "3.7-2", "1.8.4", + "2.2-6", "0.3.6", "1.0.2", "1.2.0", "1.0.1", "1.8.4", "0.2.5", + "1.2-2", "5.36", "0.6.3", "1.7.1", "1.22.0", "2.2.2", "2.6-7", + "1.1-2", "0.12.18", "0.3.3.4.0", "0.3.0", "1.95-4.11", "1.1.1", + "1.1.0", "1.0.1", "0.8.7", "1.4.3", "0.5.10", "1.9", "0.2.1", + "0.4.6.1", "0.10.15", "1.9-1", "0.93-2", "4.1-13", "1.0", "0.7", + "0.4-13", "1.3-6", "1.01", "2.4-0", "1.0.0", "0.3-41", "0.6-3", + "1.4.4", "1.1.0", "1.5.1", "1.0.13", "2.7.4", "2.5.0", "0.16.0", + "0.9.2", "0.1.7", "1.3-1", "2.2-0", "1.77", "0.2.9.3", "0.7-8", + "1.7", "0.9.5.1", "1.1.7", "1.3.1", "3.33-2", "2.42-6", "1.2.1", + "1.0-9", "1.4.2", "0.8.1", "0.2.4", "1.7.14", "0.1-2.1", "0.6-0", + "1.1.4", "0.5.1", "0.3.0", "2.5-0", "0.3.3", "1.2.2", "0.3-2", + "2.1.2", "3.98-1.15", "1.2.0", "1.8-2", "2.2.0", 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100644 Binary files a/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/Matrix_1.2-14.zip and b/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/Matrix_1.2-14.zip differ diff --git a/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/PACKAGES b/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/PACKAGES index b4f42ea751f..b0ec50d914b 100644 --- a/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/PACKAGES +++ b/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/PACKAGES @@ -18,11 +18,13 @@ License: GPL Package: agridat Version: 1.16 -Suggests: AER, agricolae, betareg, broom, car, coin, corrgram, desplot, dplyr, effects, - equivalence, emmeans, FrF2, gam, gge, ggplot2, gnm, gstat, HH, knitr, lattice, - latticeExtra, lme4, lucid, mapproj, maps, MASS, MCMCglmm, metafor, mgcv, NADA, - nlme, nullabor, ordinal, pbkrtest, pls, pscl, reshape2, rgdal, qicharts, qtl, - sp, SpATS, survival, vcd, testthat +Suggests: AER, agricolae, betareg, broom, car, coin, corrgram, + desplot, dplyr, effects, equivalence, emmeans, FrF2, gam, + gge, ggplot2, gnm, gstat, HH, knitr, lattice, + latticeExtra, lme4, lucid, mapproj, maps, MASS, MCMCglmm, + metafor, mgcv, NADA, nlme, nullabor, ordinal, pbkrtest, + pls, pscl, reshape2, rgdal, qicharts, qtl, sp, SpATS, + survival, vcd, testthat License: CC BY-SA 4.0 Package: AlgDesign @@ -32,7 +34,8 @@ Archs: i386, x64 Package: arm Version: 1.10-1 -Depends: R (>= 3.1.0), MASS, Matrix (>= 1.0), stats, lme4 (>= 1.0) +Depends: R (>= 3.1.0), MASS, Matrix (>= 1.0), stats, lme4 (>= + 1.0) Imports: abind, coda, graphics, grDevices, methods, nlme, utils License: GPL (>= 3) @@ -57,12 +60,14 @@ License: GPL-2 | GPL-3 Archs: i386, x64 Package: bayesplot -Version: 1.5.0 +Version: 1.6.0 Depends: R (>= 3.1.0) -Imports: dplyr (>= 0.7.1), ggplot2 (>= 2.2.1), reshape2, stats, utils, rlang, ggridges -Suggests: arm, gridExtra (>= 2.2.1), knitr (>= 1.16), loo (>= 1.1.0), rmarkdown (>= - 1.0.0), rstan (>= 2.14.1), rstanarm (>= 2.14.1), rstantools (>= 1.4.0), scales, - shinystan (>= 2.3.0), testthat, vdiffr +Imports: dplyr (>= 0.7.1), ggplot2 (>= 2.2.1), reshape2, stats, + utils, rlang, ggridges +Suggests: arm, gridExtra (>= 2.2.1), knitr (>= 1.16), loo (>= + 2.0.0), rmarkdown (>= 1.0.0), rstan (>= 2.17.1), rstanarm + (>= 2.17.4), rstantools (>= 1.5.0), scales, shinystan (>= + 2.3.0), testthat (>= 2.0.0), vdiffr License: GPL (>= 3) Package: BH @@ -97,30 +102,37 @@ License: Unlimited Package: broom Version: 0.5.0 Depends: R (>= 3.1) -Imports: backports, dplyr, methods, nlme, purrr, reshape2, stringr, tibble, tidyr -Suggests: AER, akima, AUC, bbmle, betareg, biglm, binGroup, boot, brms, btergm, car, - caret, coda, covr, e1071, emmeans, ergm, gam (>= 1.15), gamlss, gamlss.data, - gamlss.dist, geepack, ggplot2, glmnet, gmm, Hmisc, irlba, joineRML, Kendall, - knitr, ks, Lahman, lavaan, lfe, lme4, lmodel2, lmtest, lsmeans, maps, maptools, - MASS, Matrix, mclust, mgcv, muhaz, multcomp, network, nnet, orcutt (>= 2.2), - ordinal, plm, plyr, poLCA, psych, quantreg, rgeos, rmarkdown, robust, rsample, - rstan, rstanarm, sp, speedglm, statnet.common, survey, survival, testthat, - tseries, xergm, zoo +Imports: backports, dplyr, methods, nlme, purrr, reshape2, + stringr, tibble, tidyr +Suggests: AER, akima, AUC, bbmle, betareg, biglm, binGroup, + boot, brms, btergm, car, caret, coda, covr, e1071, + emmeans, ergm, gam (>= 1.15), gamlss, gamlss.data, + gamlss.dist, geepack, ggplot2, glmnet, gmm, Hmisc, irlba, + joineRML, Kendall, knitr, ks, Lahman, lavaan, lfe, lme4, + lmodel2, lmtest, lsmeans, maps, maptools, MASS, Matrix, + mclust, mgcv, muhaz, multcomp, network, nnet, orcutt (>= + 2.2), ordinal, plm, plyr, poLCA, psych, quantreg, rgeos, + rmarkdown, robust, rsample, rstan, rstanarm, sp, + speedglm, statnet.common, survey, survival, testthat, + tseries, xergm, zoo License: MIT + file LICENSE Package: candisc Version: 0.8-0 Depends: car, heplots (>= 0.8-6), graphics, stats -Suggests: rgl, corrplot, knitr, rmarkdown, MASS, rpart, rpart.plot +Suggests: rgl, corrplot, knitr, rmarkdown, MASS, rpart, + rpart.plot License: GPL (>= 2) Package: car Version: 3.0-0 Depends: R (>= 3.2.0), carData (>= 3.0-0) -Imports: abind, MASS, mgcv, nnet, pbkrtest (>= 0.4-4), quantreg, grDevices, utils, stats, - graphics, maptools, rio, lme4, nlme -Suggests: alr4, boot, coxme, leaps, lmtest, Matrix, MatrixModels, rgl (>= 0.93.960), - sandwich, SparseM, survival, survey +Imports: abind, MASS, mgcv, nnet, pbkrtest (>= 0.4-4), quantreg, + grDevices, utils, stats, graphics, maptools, rio, lme4, + nlme +Suggests: alr4, boot, coxme, leaps, lmtest, Matrix, + MatrixModels, rgl (>= 0.93.960), sandwich, SparseM, + survival, survey License: GPL (>= 2) Package: carData @@ -147,8 +159,9 @@ Package: checkmate Version: 1.8.5 Depends: R (>= 3.0.0) Imports: backports (>= 1.1.0), utils -Suggests: R6, bit, fastmatch, data.table (>= 1.9.8), devtools, ggplot2, knitr, magrittr, - microbenchmark, rmarkdown, testthat (>= 0.11.0), tibble +Suggests: R6, bit, fastmatch, data.table (>= 1.9.8), devtools, + ggplot2, knitr, magrittr, microbenchmark, rmarkdown, + testthat (>= 0.11.0), tibble License: BSD_3_clause + file LICENSE Archs: i386, x64 @@ -164,9 +177,10 @@ Archs: i386, x64 Package: circlize Version: 0.4.4 Depends: R (>= 3.0.0), graphics -Imports: GlobalOptions (>= 0.1.0), shape, grDevices, utils, stats, colorspace, methods, - grid -Suggests: knitr, dendextend (>= 1.0.1), ComplexHeatmap (>= 1.13.2), gridBase, png +Imports: GlobalOptions (>= 0.1.0), shape, grDevices, utils, + stats, colorspace, methods, grid +Suggests: knitr, dendextend (>= 1.0.1), ComplexHeatmap (>= + 1.13.2), gridBase, png License: MIT + file LICENSE Package: CircStats @@ -205,15 +219,15 @@ License: MIT + file LICENSE Package: clifro Version: 3.2-0 -Imports: methods, lubridate, xml2, magrittr, RCurl, utils, ggplot2 (>= 2.0.0), scales, - RColorBrewer, reshape2 +Imports: methods, lubridate, xml2, magrittr, RCurl, utils, + ggplot2 (>= 2.0.0), scales, RColorBrewer, reshape2 Suggests: knitr, rmarkdown, ggmap (>= 2.6), pander, testthat License: GPL-2 Package: climdex.pcic -Version: 1.1-6 +Version: 1.1-9 Depends: R (>= 2.12.0), PCICt (>= 0.5-4) -Imports: caTools (>= 1.0), methods, Rcpp (>= 0.11.4) +Imports: methods, Rcpp (>= 0.11.4) Suggests: compiler, RUnit License: GPL-3 Archs: i386, x64 @@ -228,7 +242,7 @@ License: GPL (>= 2) Archs: i386, x64 Package: cmsaf -Version: 1.9.1 +Version: 1.9.4 Depends: ncdf4, sp, raster, fields License: GPL (>= 3) @@ -247,7 +261,8 @@ License: GPL Package: coin Version: 1.2-2 Depends: R (>= 2.14.0), methods, survival -Imports: stats, modeltools (>= 0.2-9), mvtnorm (>= 1.0-5), multcomp +Imports: stats, modeltools (>= 0.2-9), mvtnorm (>= 1.0-5), + multcomp Suggests: parallel, xtable, e1071, vcd, TH.data (>= 1.0-7) License: GPL-2 Archs: i386, x64 @@ -260,8 +275,8 @@ Package: colorspace Version: 1.3-2 Depends: R (>= 2.13.0), methods Imports: graphics, grDevices -Suggests: datasets, stats, utils, KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, - tcltk, shiny, shinyjs +Suggests: datasets, stats, utils, KernSmooth, MASS, kernlab, + mvtnorm, vcd, dichromat, tcltk, shiny, shinyjs License: BSD_3_clause + file LICENSE Archs: i386, x64 @@ -272,10 +287,10 @@ License: GPL-2 Package: cowplot Version: 0.9.3 Depends: R (>= 3.3.0), ggplot2 (>= 2.1.0), -Imports: grid (>= 3.0.0), gtable (>= 0.1.2), plyr (>= 1.8.2), grDevices, methods, scales, - utils -Suggests: covr, gridGraphics, knitr, magick, maps, dplyr, tidyr, testthat, vdiffr, - viridis +Imports: grid (>= 3.0.0), gtable (>= 0.1.2), plyr (>= 1.8.2), + grDevices, methods, scales, utils +Suggests: covr, gridGraphics, knitr, magick, maps, dplyr, tidyr, + testthat, vdiffr, viridis License: GPL-2 Package: crayon @@ -286,14 +301,15 @@ License: MIT + file LICENSE Package: crosstalk Version: 1.0.0 -Imports: htmltools (>= 0.3.5), jsonlite, lazyeval, R6, shiny (>= 0.11), ggplot2 +Imports: htmltools (>= 0.3.5), jsonlite, lazyeval, R6, shiny (>= + 0.11), ggplot2 License: MIT + file LICENSE Package: curl Version: 3.2 Depends: R (>= 3.0.0) -Suggests: spelling, testthat (>= 1.0.0), knitr, jsonlite, rmarkdown, magrittr, httpuv, - webutils +Suggests: spelling, testthat (>= 1.0.0), knitr, jsonlite, + rmarkdown, magrittr, httpuv, webutils License: MIT + file LICENSE Archs: i386, x64 @@ -301,7 +317,8 @@ Package: DAAG Version: 1.22 Depends: R (>= 2.10.0), lattice Imports: latticeExtra, methods -Suggests: leaps, oz, lme4, quantreg, knitr, boot, rpart, randomForest, MASS, survival +Suggests: leaps, oz, lme4, quantreg, knitr, boot, rpart, + randomForest, MASS, survival License: GPL-3 Package: dae @@ -322,8 +339,8 @@ Archs: i386, x64 Package: DBI Version: 1.0.0 Depends: R (>= 3.0.0), methods -Suggests: blob, covr, hms, knitr, magrittr, rprojroot, rmarkdown, RSQLite (>= 1.1-2), - testthat, xml2 +Suggests: blob, covr, hms, knitr, magrittr, rprojroot, + rmarkdown, RSQLite (>= 1.1-2), testthat, xml2 License: LGPL (>= 2) Package: deldir @@ -337,10 +354,12 @@ Archs: i386, x64 Package: dendextend Version: 1.8.0 Depends: R (>= 3.0.0) -Imports: utils, stats, datasets, magrittr (>= 1.0.1), ggplot2, fpc, whisker, viridis -Suggests: knitr, rmarkdown, testthat, seriation, colorspace, plyr, ape, profdpm, - microbenchmark, gplots, heatmaply, d3heatmap, dynamicTreeCut, pvclust, - corrplot, DendSer, MASS, cluster, circlize (>= 0.2.5), covr +Imports: utils, stats, datasets, magrittr (>= 1.0.1), ggplot2, + fpc, whisker, viridis +Suggests: knitr, rmarkdown, testthat, seriation, colorspace, + plyr, ape, profdpm, microbenchmark, gplots, heatmaply, + d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, + MASS, cluster, circlize (>= 0.2.5), covr Enhances: ggdendro, dendroextras, Hmisc, data.table, rpart License: GPL-2 | GPL-3 @@ -353,18 +372,15 @@ License: GPL (>= 2) Package: devtools Version: 1.13.6 Depends: R (>= 3.0.2) -Imports: httr (>= 0.4), utils, tools, methods, memoise (>= 1.0.0), whisker, digest, - rstudioapi (>= 0.2.0), jsonlite, stats, git2r (>= 0.11.0), withr -Suggests: curl (>= 0.9), crayon, testthat (>= 1.0.2), BiocInstaller, Rcpp (>= 0.10.0), - MASS, rmarkdown, knitr, hunspell (>= 2.0), lintr (>= 0.2.1), bitops, roxygen2 - (>= 5.0.0), evaluate, rversions, covr, gmailr (> 0.7.0) +Imports: httr (>= 0.4), utils, tools, methods, memoise (>= + 1.0.0), whisker, digest, rstudioapi (>= 0.2.0), jsonlite, + stats, git2r (>= 0.11.0), withr +Suggests: curl (>= 0.9), crayon, testthat (>= 1.0.2), + BiocInstaller, Rcpp (>= 0.10.0), MASS, rmarkdown, knitr, + hunspell (>= 2.0), lintr (>= 0.2.1), bitops, roxygen2 (>= + 5.0.0), evaluate, rversions, covr, gmailr (> 0.7.0) License: GPL (>= 2) -Package: dichromat -Version: 2.0-0 -Depends: R (>= 2.10), stats -License: GPL-2 - Package: digest Version: 0.6.15 Depends: R (>= 2.4.1) @@ -383,25 +399,29 @@ Depends: R (>= 2.10.0) License: GPL (>= 2) Package: dotCall64 -Version: 0.9-5.2 +Version: 1.0-0 Depends: R (>= 3.1) -Suggests: microbenchmark, OpenMPController, RColorBrewer, roxygen2, spam, testthat, +Suggests: microbenchmark, OpenMPController, RColorBrewer, + roxygen2, spam, testthat, License: GPL (>= 2) Archs: i386, x64 Package: dplyr Version: 0.7.6 Depends: R (>= 3.1.2) -Imports: assertthat (>= 0.2.0), bindrcpp (>= 0.2.0.9000), glue (>= 1.1.1), magrittr (>= - 1.5), methods, pkgconfig (>= 2.0.1), R6 (>= 2.2.2), Rcpp (>= 0.12.15), rlang - (>= 0.2.0), tibble (>= 1.3.1), tidyselect (>= 0.2.3), utils -LinkingTo: BH (>= 1.58.0-1), bindrcpp (>= 0.2.0.9000), plogr (>= 0.1.10), Rcpp (>= - 0.12.15) -Suggests: bit64 (>= 0.9.7), callr, covr (>= 3.0.1), DBI (>= 0.7.14), dbplyr (>= 1.2.0), - dtplyr (>= 0.0.2), ggplot2 (>= 2.2.1), hms (>= 0.4.1), knitr (>= 1.19), Lahman - (>= 3.0-1), lubridate, MASS, mgcv (>= 1.8.23), microbenchmark (>= 1.4.4), - nycflights13 (>= 0.2.2), rmarkdown (>= 1.8), RMySQL (>= 0.10.13), RPostgreSQL - (>= 0.6.2), RSQLite (>= 2.0), testthat (>= 2.0.0), withr (>= 2.1.1) +Imports: assertthat (>= 0.2.0), bindrcpp (>= 0.2.0.9000), glue + (>= 1.1.1), magrittr (>= 1.5), methods, pkgconfig (>= + 2.0.1), R6 (>= 2.2.2), Rcpp (>= 0.12.15), rlang (>= + 0.2.0), tibble (>= 1.3.1), tidyselect (>= 0.2.3), utils +LinkingTo: BH (>= 1.58.0-1), bindrcpp (>= 0.2.0.9000), plogr (>= + 0.1.10), Rcpp (>= 0.12.15) +Suggests: bit64 (>= 0.9.7), callr, covr (>= 3.0.1), DBI (>= + 0.7.14), dbplyr (>= 1.2.0), dtplyr (>= 0.0.2), ggplot2 + (>= 2.2.1), hms (>= 0.4.1), knitr (>= 1.19), Lahman (>= + 3.0-1), lubridate, MASS, mgcv (>= 1.8.23), microbenchmark + (>= 1.4.4), nycflights13 (>= 0.2.2), rmarkdown (>= 1.8), + RMySQL (>= 0.10.13), RPostgreSQL (>= 0.6.2), RSQLite (>= + 2.0), testthat (>= 2.0.0), withr (>= 2.1.1) License: MIT + file LICENSE Archs: i386, x64 @@ -411,18 +431,20 @@ Depends: utils License: GPL (>= 2) Package: e1071 -Version: 1.6-8 +Version: 1.7-0 Imports: graphics, grDevices, class, stats, methods, utils -Suggests: cluster, mlbench, nnet, randomForest, rpart, SparseM, xtable, Matrix, MASS +Suggests: cluster, mlbench, nnet, randomForest, rpart, SparseM, + xtable, Matrix, MASS License: GPL-2 Archs: i386, x64 Package: effects Version: 4.0-2 Depends: R (>= 3.2.0), carData -Imports: lme4, nnet, lattice, grid, colorspace, graphics, grDevices, stats, survey, - utils, estimability -Suggests: pbkrtest (>= 0.4-4), nlme, MASS, poLCA, heplots, splines, ordinal, car, knitr +Imports: lme4, nnet, lattice, grid, colorspace, graphics, + grDevices, stats, survey, utils, estimability +Suggests: pbkrtest (>= 0.4-4), nlme, MASS, poLCA, heplots, + splines, ordinal, car, knitr License: GPL (>= 2) Package: ellipse @@ -434,13 +456,14 @@ License: GPL (>= 2) Package: emmeans Version: 1.2.3 Depends: R (>= 3.2) -Imports: estimability (>= 1.3), graphics, methods, stats, utils, plyr, mvtnorm, xtable - (>= 1.8-2) -Suggests: bayesplot, brms, car, coda (>= 0.17), ggplot2, lattice, mediation, multcomp, - multcompView, nlme, ordinal, pbkrtest (>= 0.4-1), lme4, lmerTest (>= 2.0.32), - MASS, rsm, knitr, rmarkdown, testthat -Enhances: CARBayes, coxme, gee, geepack, glmmADMB, MCMCglmm, MCMCpack, nnet, pscl, - rstanarm, survival +Imports: estimability (>= 1.3), graphics, methods, stats, utils, + plyr, mvtnorm, xtable (>= 1.8-2) +Suggests: bayesplot, brms, car, coda (>= 0.17), ggplot2, + lattice, mediation, multcomp, multcompView, nlme, + ordinal, pbkrtest (>= 0.4-1), lme4, lmerTest (>= 2.0.32), + MASS, rsm, knitr, rmarkdown, testthat +Enhances: CARBayes, coxme, gee, geepack, glmmADMB, MCMCglmm, + MCMCpack, nnet, pscl, rstanarm, survival License: GPL-2 | GPL-3 Package: EnvStats @@ -486,8 +509,8 @@ Archs: i386, x64 Package: factoextra Version: 1.0.5 Depends: R (>= 3.1.2), ggplot2 (>= 2.2.0) -Imports: abind, cluster, dendextend, FactoMineR, ggpubr(>= 0.1.5), grid, stats, reshape2, - ggrepel, tidyr +Imports: abind, cluster, dendextend, FactoMineR, ggpubr(>= + 0.1.5), grid, stats, reshape2, ggrepel, tidyr Suggests: ade4, ca, igraph, MASS, knitr, mclust License: GPL-2 @@ -495,14 +518,14 @@ Package: FactoMineR Version: 1.41 Depends: R (>= 3.0.0) Imports: - car,cluster,ellipse,flashClust,graphics,grDevices,lattice,leaps,MASS,scatterplot3d,stats,utils + car,cluster,ellipse,flashClust,graphics,grDevices,lattice,leaps,MASS,scatterplot3d,stats,utils Suggests: missMDA,knitr License: GPL (>= 2) Package: fansi -Version: 0.2.3 +Version: 0.3.0 Depends: R (>= 3.1.0) -Suggests: unitizer +Suggests: unitizer, knitr, rmarkdown License: GPL (>= 2) Archs: i386, x64 @@ -522,8 +545,8 @@ Package: fitdistrplus Version: 1.0-9 Depends: R (>= 3.2.0), MASS, grDevices, survival, methods Imports: stats -Suggests: actuar, rgenoud, mc2d, gamlss.dist, knitr, knitcitations, ggplot2, - GeneralizedHyperbolic +Suggests: actuar, rgenoud, mc2d, gamlss.dist, knitr, + knitcitations, ggplot2, GeneralizedHyperbolic License: GPL (>= 2) Package: flashClust @@ -535,9 +558,11 @@ Archs: i386, x64 Package: flexmix Version: 2.3-14 Depends: R (>= 2.15.0), lattice -Imports: graphics, grid, grDevices, methods, modeltools (>= 0.2-16), nnet, stats, stats4 -Suggests: actuar, codetools, diptest, ellipse, gclus, glmnet, lme4 (>= 1.0), MASS, mgcv - (>= 1.8-0), mlbench, mlogit, multcomp, mvtnorm, SuppDists, survival +Imports: graphics, grid, grDevices, methods, modeltools (>= + 0.2-16), nnet, stats, stats4 +Suggests: actuar, codetools, diptest, ellipse, gclus, glmnet, + lme4 (>= 1.0), MASS, mgcv (>= 1.8-0), mlbench, mlogit, + multcomp, mvtnorm, SuppDists, survival License: GPL (>= 2) Package: forcats @@ -571,8 +596,9 @@ License: GPL-2 | GPL-3 Package: fpc Version: 2.1-11.1 Depends: R (>= 2.0) -Imports: MASS, cluster, mclust, flexmix, prabclus, class, diptest, mvtnorm, robustbase, - kernlab, trimcluster, grDevices, graphics, methods, stats, utils +Imports: MASS, cluster, mclust, flexmix, prabclus, class, + diptest, mvtnorm, robustbase, kernlab, trimcluster, + grDevices, graphics, methods, stats, utils Suggests: tclust, pdfCluster License: GPL @@ -598,6 +624,14 @@ Suggests: htmltools, testthat, fontquiver (>= 0.2.0), curl License: GPL-3 | file LICENSE Archs: i386, x64 +Package: geosphere +Version: 1.5-7 +Depends: R (>= 3.0.0) +Imports: sp +Suggests: methods, raster +License: GPL (>= 3) +Archs: i386, x64 + Package: getPass Version: 0.2-2 Depends: R (>= 3.0.0) @@ -609,63 +643,73 @@ Archs: i386, x64 Package: GGally Version: 1.4.0 Depends: R (>= 3.1), ggplot2 (> 2.2.0) -Imports: grDevices, grid, gtable (>= 0.2.0), plyr (>= 1.8.3), progress, RColorBrewer, - reshape (>= 0.8.5), utils, rlang -Suggests: broom (>= 0.4.0), chemometrics, geosphere (>= 1.5-1), igraph (>= 1.0.1), - intergraph (>= 2.0-2), maps (>= 3.1.0), mapproj, network (>= 1.12.0), - scagnostics, scales (>= 0.4.0), sna (>= 2.3-2), survival, packagedocs (>= - 0.4.0), rmarkdown, roxygen2, testthat, crosstalk +Imports: grDevices, grid, gtable (>= 0.2.0), plyr (>= 1.8.3), + progress, RColorBrewer, reshape (>= 0.8.5), utils, rlang +Suggests: broom (>= 0.4.0), chemometrics, geosphere (>= 1.5-1), + igraph (>= 1.0.1), intergraph (>= 2.0-2), maps (>= + 3.1.0), mapproj, network (>= 1.12.0), scagnostics, scales + (>= 0.4.0), sna (>= 2.3-2), survival, packagedocs (>= + 0.4.0), rmarkdown, roxygen2, testthat, crosstalk License: GPL (>= 2.0) Package: ggdendro Version: 0.1-20 Imports: MASS, ggplot2(>= 0.9.2) -Suggests: rpart(>= 4.0-0), tree, testthat, knitr, cluster, scales +Suggests: rpart(>= 4.0-0), tree, testthat, knitr, cluster, + scales License: GPL-2 | GPL-3 Package: ggeffects -Version: 0.4.0 +Version: 0.5.0 Depends: R (>= 3.2), graphics, stats, utils -Imports: dplyr (>= 0.7.1), effects (>= 4.0-0), ggplot2 (>= 2.2.1), magrittr, prediction - (>= 0.2.0), purrr, rlang, scales, sjlabelled (>= 1.0.11), sjmisc (>= 2.7.2), - sjstats (>= 0.15.0), tibble (>= 1.3.3), tidyr (>= 0.7.0), tidyselect -Suggests: glmmTMB, knitr, lme4, MASS, nlme, rmarkdown, rstantools, survey, testthat +Imports: dplyr, effects (>= 4.0-0), ggplot2, magrittr, + prediction, purrr, rlang, scales, sjlabelled (>= 1.0.12), + sjmisc (>= 2.7.3), sjstats (>= 0.16.0), tibble, tidyr, + tidyselect +Suggests: glmmTMB, knitr, lme4, MASS, nlme, rmarkdown, + rstantools, survey, testthat License: GPL-3 Package: ggformula -Version: 0.8.0 -Depends: R (>= 3.1), ggplot2 -Imports: mosaicCore, rlang, magrittr, tibble, stringr, dplyr, grid -Suggests: lattice, mosaic, mosaicModel, mosaicData, testthat, knitr, rmarkdown, - lubridate, survival, broom, scales, maps, maptools, rgeos, sf, purrr, ggthemes +Version: 0.9.0 +Depends: R (>= 3.1), ggplot2 (>= 3.0), ggstance (>= 0.3.1) +Imports: mosaicCore, rlang, magrittr, tibble, stringr, tidyr, + grid +Suggests: dplyr, lattice, mosaic, mosaicModel, mosaicData, + testthat, vdiffr, knitr, rmarkdown, lubridate, survival, + broom, scales, maps, maptools, rgeos, sf, purrr, ggthemes License: MIT + file LICENSE Package: ggfortify Version: 0.4.5 Depends: methods, ggplot2 (>= 2.0.0) -Imports: dplyr (>= 0.3), tidyr, gridExtra, grid, scales, stringr, tibble -Suggests: testthat, cluster, changepoint, dlm, fGarch, forecast, ggrepel, glmnet, - grDevices, KFAS, knitr, lintr, mapdata, MASS, MSwM, nlme, raster, ROCR, sp, - stats, strucchange, survival, timeSeries, tseries, utils, vars, xts, zoo, lfda +Imports: dplyr (>= 0.3), tidyr, gridExtra, grid, scales, + stringr, tibble +Suggests: testthat, cluster, changepoint, dlm, fGarch, forecast, + ggrepel, glmnet, grDevices, KFAS, knitr, lintr, mapdata, + MASS, MSwM, nlme, raster, ROCR, sp, stats, strucchange, + survival, timeSeries, tseries, utils, vars, xts, zoo, + lfda License: GPL-2 Package: ggplot2 Version: 3.0.0 Depends: R (>= 3.1) -Imports: digest, grid, gtable (>= 0.1.1), lazyeval, MASS, mgcv, plyr (>= 1.7.1), - reshape2, rlang, scales (>= 0.5.0), stats, tibble, viridisLite, withr (>= - 2.0.0) -Suggests: covr, dplyr, ggplot2movies, hexbin, Hmisc, lattice, mapproj, maps, maptools, - multcomp, munsell, nlme, testthat (>= 0.11.0), vdiffr, quantreg, knitr, rgeos, - rpart, rmarkdown, sf (>= 0.3-4), svglite (>= 1.2.0.9001) +Imports: digest, grid, gtable (>= 0.1.1), lazyeval, MASS, mgcv, + plyr (>= 1.7.1), reshape2, rlang, scales (>= 0.5.0), + stats, tibble, viridisLite, withr (>= 2.0.0) +Suggests: covr, dplyr, ggplot2movies, hexbin, Hmisc, lattice, + mapproj, maps, maptools, multcomp, munsell, nlme, + testthat (>= 0.11.0), vdiffr, quantreg, knitr, rgeos, + rpart, rmarkdown, sf (>= 0.3-4), svglite (>= 1.2.0.9001) Enhances: sp License: GPL-2 | file LICENSE Package: ggpubr Version: 0.1.7 Depends: R (>= 3.1.0), ggplot2, magrittr -Imports: ggrepel, grid, ggsci, stats, utils, tidyr, purrr, dplyr(>= 0.7.1), cowplot, - ggsignif, scales, gridExtra +Imports: ggrepel, grid, ggsci, stats, utils, tidyr, purrr, + dplyr(>= 0.7.1), cowplot, ggsignif, scales, gridExtra Suggests: grDevices, knitr, RColorBrewer, gtable License: GPL-2 @@ -674,17 +718,18 @@ Version: 0.8.0 Depends: R (>= 3.0.0), ggplot2 (>= 2.2.0) Imports: grid, Rcpp, scales (>= 0.3.0) LinkingTo: Rcpp -Suggests: knitr, rmarkdown, testthat, gridExtra, devtools, prettydoc +Suggests: knitr, rmarkdown, testthat, gridExtra, devtools, + prettydoc License: GPL-3 | file LICENSE Archs: i386, x64 Package: ggridges Version: 0.5.0 Depends: R (>= 3.2) -Imports: ggplot2 (>= 2.2.0), grid (>= 3.0.0), plyr (>= 1.8.0), scales (>= 0.4.1), withr - (>= 2.1.1) -Suggests: covr, dplyr, gridExtra, ggplot2movies, DAAG, forcats, knitr, rmarkdown, - testthat, vdiffr, viridis +Imports: ggplot2 (>= 2.2.0), grid (>= 3.0.0), plyr (>= 1.8.0), + scales (>= 0.4.1), withr (>= 2.1.1) +Suggests: covr, dplyr, gridExtra, ggplot2movies, DAAG, forcats, + knitr, rmarkdown, testthat, vdiffr, viridis License: GPL-2 | file LICENSE Package: ggsci @@ -700,12 +745,21 @@ Imports: ggplot2 (>= 2.0.0) Suggests: testthat, knitr, rmarkdown License: GPL-3 +Package: ggstance +Version: 0.3.1 +Depends: R (>= 3.1.0) +Imports: ggplot2 (>= 3.0.0), plyr, rlang, withr (>= 2.0.0) +Suggests: Hmisc, testthat, vdiffr +License: GPL-3 + Package: ggthemes Version: 4.0.0 Depends: R (>= 3.0.0) -Imports: ggplot2 (>= 3.0.0), graphics, grid, methods, purrr, scales, stringr, tibble -Suggests: dplyr, covr, extrafont, glue, knitr, lintr, maps, mapproj, pander, rlang, - rmarkdown, spelling, testthat, tidyr, vdiffr, withr +Imports: ggplot2 (>= 3.0.0), graphics, grid, methods, purrr, + scales, stringr, tibble +Suggests: dplyr, covr, extrafont, glue, knitr, lintr, maps, + mapproj, pander, rlang, rmarkdown, spelling, testthat, + tidyr, vdiffr, withr License: GPL-2 Package: git2r @@ -719,10 +773,12 @@ Archs: i386, x64 Package: glmmTMB Version: 0.2.2.0 Depends: R (>= 3.2.0) -Imports: methods, TMB (>= 1.7.13), lme4 (>= 1.1-10), Matrix, nlme +Imports: methods, TMB (>= 1.7.13), lme4 (>= 1.1-10), Matrix, + nlme LinkingTo: TMB, RcppEigen -Suggests: knitr, rmarkdown, testthat, MASS, lattice, ggplot2, mlmRev, bbmle (>= 1.0.19), - pscl, MCMCpack, coda, reshape2, plyr +Suggests: knitr, rmarkdown, testthat, MASS, lattice, ggplot2, + mlmRev, bbmle (>= 1.0.19), pscl, MCMCpack, coda, + reshape2, plyr License: AGPL-3 Archs: i386, x64 @@ -737,8 +793,9 @@ Package: glue Version: 1.3.0 Depends: R (>= 3.1) Imports: methods -Suggests: testthat, covr, magrittr, crayon, knitr, rmarkdown, DBI, RSQLite, R.utils, - forcats, microbenchmark, rprintf, stringr, ggplot2, dplyr, withr +Suggests: testthat, covr, magrittr, crayon, knitr, rmarkdown, + DBI, RSQLite, R.utils, forcats, microbenchmark, rprintf, + stringr, ggplot2, dplyr, withr License: MIT + file LICENSE Archs: i386, x64 @@ -785,7 +842,8 @@ Archs: i386, x64 Package: haven Version: 1.1.2 Depends: R (>= 3.1) -Imports: forcats (>= 0.2.0), hms, Rcpp (>= 0.11.4), readr (>= 0.1.0), tibble +Imports: forcats (>= 0.2.0), hms, Rcpp (>= 0.11.4), readr (>= + 0.1.0), tibble LinkingTo: Rcpp Suggests: covr, fs, knitr, rmarkdown, testthat License: MIT + file LICENSE @@ -795,8 +853,8 @@ Package: heplots Version: 1.3-5 Depends: R (>= 2.10), car Imports: MASS, graphics, grDevices, stats, utils -Suggests: rgl, candisc, effects, reshape, gplots, nlme, lattice, reshape2, corrgram, FRB, - animation, mvinfluence +Suggests: rgl, candisc, effects, reshape, gplots, nlme, lattice, + reshape2, corrgram, FRB, animation, mvinfluence License: GPL (>= 2) Package: hexbin @@ -815,10 +873,13 @@ License: GPL Package: Hmisc Version: 4.1-1 -Depends: lattice, survival (>= 2.40-1), Formula, ggplot2 (>= 2.2) -Imports: methods, latticeExtra, cluster, rpart, nnet, acepack, foreign, gtable, grid, - gridExtra, data.table, htmlTable (>= 1.11.0), viridis, htmltools, base64enc -Suggests: chron, rms, mice, tables, knitr, ff, ffbase, plotly (>= 4.5.6) +Depends: lattice, survival (>= 2.40-1), Formula, ggplot2 (>= + 2.2) +Imports: methods, latticeExtra, cluster, rpart, nnet, acepack, + foreign, gtable, grid, gridExtra, data.table, htmlTable + (>= 1.11.0), viridis, htmltools, base64enc +Suggests: chron, rms, mice, tables, knitr, ff, ffbase, plotly + (>= 4.5.6) License: GPL (>= 2) Archs: i386, x64 @@ -830,10 +891,11 @@ License: GPL-3 Package: htmlTable Version: 1.12 -Imports: stringr, knitr (>= 1.6), magrittr (>= 1.5), methods, checkmate, htmlwidgets, - htmltools, rstudioapi (>= 0.6) -Suggests: testthat, XML, xtable, ztable, Hmisc, reshape, rmarkdown, pander, chron, - lubridate, tibble, tidyr (>= 0.7.2), dplyr (>= 0.7.4) +Imports: stringr, knitr (>= 1.6), magrittr (>= 1.5), methods, + checkmate, htmlwidgets, htmltools, rstudioapi (>= 0.6) +Suggests: testthat, XML, xtable, ztable, Hmisc, reshape, + rmarkdown, pander, chron, lubridate, tibble, tidyr (>= + 0.7.2), dplyr (>= 0.7.4) License: GPL (>= 3) Package: htmltools @@ -848,7 +910,8 @@ Archs: i386, x64 Package: htmlwidgets Version: 1.2 -Imports: grDevices, htmltools (>= 0.3), jsonlite (>= 0.9.16), yaml +Imports: grDevices, htmltools (>= 0.3), jsonlite (>= 0.9.16), + yaml Suggests: knitr (>= 1.8) Enhances: shiny (>= 1.0.5) License: MIT + file LICENSE @@ -866,7 +929,8 @@ Package: httr Version: 1.3.1 Depends: R (>= 3.0.0) Imports: jsonlite, mime, curl (>= 0.9.1), openssl (>= 0.8), R6 -Suggests: httpuv, jpeg, knitr, png, testthat (>= 0.8.0), readr, xml2, rmarkdown, covr +Suggests: httpuv, jpeg, knitr, png, testthat (>= 0.8.0), readr, + xml2, rmarkdown, covr License: MIT + file LICENSE Package: iterators @@ -885,12 +949,13 @@ License: GPL-2 Package: jsonlite Version: 1.5 Depends: methods -Suggests: httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp, sp +Suggests: httr, curl, plyr, testthat, knitr, rmarkdown, R.rsp, + sp License: MIT + file LICENSE Archs: i386, x64 Package: kernlab -Version: 0.9-26 +Version: 0.9-27 Depends: R (>= 2.10) Imports: methods, stats, grDevices, graphics License: GPL-2 @@ -914,10 +979,13 @@ License: GPL-2 Package: knitr Version: 1.20 Depends: R (>= 3.1.0) -Imports: evaluate (>= 0.10), highr, markdown, stringr (>= 0.6), yaml, methods, tools -Suggests: formatR, testit, digest, rgl (>= 0.95.1201), codetools, rmarkdown, htmlwidgets - (>= 0.7), webshot, tikzDevice (>= 0.10), tinytex, xfun, reticulate (>= 1.4), - JuliaCall (>= 0.11.1), png, jpeg, xml2, httr, DBI (>= 0.4-1), showtext, tibble +Imports: evaluate (>= 0.10), highr, markdown, stringr (>= 0.6), + yaml, methods, tools +Suggests: formatR, testit, digest, rgl (>= 0.95.1201), + codetools, rmarkdown, htmlwidgets (>= 0.7), webshot, + tikzDevice (>= 0.10), tinytex, xfun, reticulate (>= 1.4), + JuliaCall (>= 0.11.1), png, jpeg, xml2, httr, DBI (>= + 0.4-1), showtext, tibble License: GPL Package: labeling @@ -935,7 +1003,8 @@ Package: Lahman Version: 6.0-0 Depends: R (>= 2.10) Imports: dplyr -Suggests: lattice, ggplot2, googleVis, data.table, vcd, reshape2, tidyr, zipcode +Suggests: lattice, ggplot2, googleVis, data.table, vcd, + reshape2, tidyr, zipcode License: GPL Package: later @@ -960,7 +1029,8 @@ Package: latticeExtra Version: 0.6-28 Depends: R (>= 2.10.0), lattice, RColorBrewer Imports: grid, stats, utils, grDevices -Suggests: maps, mapproj, deldir, tripack, zoo, MASS, quantreg, mgcv +Suggests: maps, mapproj, deldir, tripack, zoo, MASS, quantreg, + mgcv License: GPL (>= 2) Package: lazyeval @@ -983,11 +1053,13 @@ License: GPL (>= 2) Package: lme4 Version: 1.1-17 Depends: R (>= 3.2.0), Matrix (>= 1.2-1), methods, stats -Imports: graphics, grid, splines, utils, parallel, MASS, lattice, nlme (>= 3.1-123), - minqa (>= 1.1.15), nloptr (>= 1.0.4) +Imports: graphics, grid, splines, utils, parallel, MASS, + lattice, nlme (>= 3.1-123), minqa (>= 1.1.15), nloptr (>= + 1.0.4) LinkingTo: Rcpp (>= 0.10.5), RcppEigen -Suggests: knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), ggplot2, mlmRev, optimx - (>= 2013.8.6), gamm4, pbkrtest, HSAUR2, numDeriv +Suggests: knitr, boot, PKPDmodels, MEMSS, testthat (>= 0.8.1), + ggplot2, mlmRev, optimx (>= 2013.8.6), gamm4, pbkrtest, + HSAUR2, numDeriv License: GPL (>= 2) Archs: i386, x64 @@ -1007,7 +1079,8 @@ Package: lmtest Version: 0.9-36 Depends: R (>= 2.10.0), stats, zoo Imports: graphics -Suggests: car, strucchange, sandwich, dynlm, stats4, survival, AER +Suggests: car, strucchange, sandwich, dynlm, stats4, survival, + AER License: GPL-2 | GPL-3 Archs: i386, x64 @@ -1017,7 +1090,8 @@ Depends: methods, R (>= 3.0.0) Imports: stringr, Rcpp (>= 0.12.13), LinkingTo: Rcpp, Suggests: testthat, knitr, covr -Enhances: chron, fts, timeSeries, timeDate, tis, tseries, xts, zoo +Enhances: chron, fts, timeSeries, timeDate, tis, tseries, xts, + zoo License: GPL (>= 2) Archs: i386, x64 @@ -1042,16 +1116,18 @@ Package: maps Version: 3.3.0 Depends: R (>= 3.0.0) Imports: graphics, utils -Suggests: mapproj (>= 1.2-0), mapdata (>= 2.3.0), sp, maptools, rnaturalearth +Suggests: mapproj (>= 1.2-0), mapdata (>= 2.3.0), sp, maptools, + rnaturalearth License: GPL-2 Archs: i386, x64 Package: maptools -Version: 0.9-2 +Version: 0.9-3 Depends: R (>= 2.10), sp (>= 1.0-11) -Imports: foreign (>= 0.8), methods, grid, lattice, stats, utils, grDevices -Suggests: rgeos (>= 0.1-8), spatstat (>= 1.18), PBSmapping, maps, RColorBrewer, raster, - polyclip, spatstat.utils +Imports: foreign (>= 0.8), methods, grid, lattice, stats, utils, + grDevices +Suggests: rgeos (>= 0.1-8), spatstat (>= 1.50), PBSmapping, + maps, RColorBrewer, raster, polyclip, spatstat.utils Enhances: gpclib, RArcInfo License: GPL (>= 2) Archs: i386, x64 @@ -1093,7 +1169,8 @@ Package: mclust Version: 5.4.1 Depends: R (>= 3.0) Imports: stats, utils, graphics, grDevices -Suggests: knitr (>= 1.12), rmarkdown (>= 0.9), mix (>= 1.0), geometry (>= 0.3-6), MASS +Suggests: knitr (>= 1.12), rmarkdown (>= 0.9), mix (>= 1.0), + geometry (>= 0.3-6), MASS License: GPL (>= 2) Archs: i386, x64 @@ -1139,8 +1216,8 @@ Archs: i386, x64 Package: modelr Version: 0.1.2 Depends: R (>= 3.1) -Imports: broom, dplyr, magrittr, purrr (>= 0.2.2), tibble, tidyr (>= 0.8.0), rlang (>= - 0.2.0) +Imports: broom, dplyr, magrittr, purrr (>= 0.2.2), tibble, tidyr + (>= 0.8.0), rlang (>= 0.2.0) Suggests: compiler, covr, ggplot2, testthat License: GPL-3 @@ -1151,12 +1228,15 @@ Imports: methods License: GPL-2 Package: mosaic -Version: 1.3.0 -Depends: R (>= 3.0.0), dplyr, lattice (>= 0.20-21), ggformula, mosaicData, Matrix -Imports: mosaicCore (>= 0.5.0), ggplot2, lazyeval (>= 0.2.0), MASS, grid, tidyr, readr, - methods, utils, splines, latticeExtra, ggdendro, gridExtra, glue, broom -Suggests: lubridate, fastR, magrittr, NHANES, RCurl, sp, maptools, vcd, testthat, knitr, - tools, parallel, mapproj, rgl, rmarkdown +Version: 1.4.0 +Depends: R (>= 3.0.0), dplyr, lattice (>= 0.20-21), ggformula, + mosaicData, Matrix +Imports: mosaicCore (>= 0.5.0), ggplot2, ggrepel, lazyeval (>= + 0.2.0), MASS, grid, tidyr, readr, methods, utils, + splines, latticeExtra, ggdendro, gridExtra, glue, broom +Suggests: lubridate, fastR, magrittr, NHANES, RCurl, sp, + maptools, vcd, testthat, knitr, tools, parallel, mapproj, + rgl, rmarkdown Enhances: manipulate License: GPL (>= 2) @@ -1170,15 +1250,18 @@ License: GPL (>= 2) Package: mosaicData Version: 0.17.0 Depends: R (>= 3.0.0) -Suggests: lattice, mosaic, reshape2, ggplot2, dplyr, tidyr, ggformula +Suggests: lattice, mosaic, reshape2, ggplot2, dplyr, tidyr, + ggformula License: GPL (>= 2) Package: multcomp Version: 1.4-8 -Depends: stats, graphics, mvtnorm (>= 1.0-3), survival (>= 2.39-4), TH.data (>= 1.0-2) +Depends: stats, graphics, mvtnorm (>= 1.0-3), survival (>= + 2.39-4), TH.data (>= 1.0-2) Imports: sandwich (>= 2.3-0), codetools -Suggests: lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, car, foreign, xtable, - lmtest, coxme (>= 2.2-1), SimComp, ISwR +Suggests: lme4 (>= 0.999375-16), nlme, robustbase, coin, MASS, + car, foreign, xtable, lmtest, coxme (>= 2.2-1), SimComp, + ISwR License: GPL-2 Package: munsell @@ -1197,7 +1280,8 @@ Archs: i386, x64 Package: ncdf.tools Version: 0.7.1.295 Depends: R (>= 2.10.0) -Imports: RNetCDF, chron, parallel, abind, plotrix, raster, RColorBrewer, JBTools +Imports: RNetCDF, chron, parallel, abind, plotrix, raster, + RColorBrewer, JBTools License: GPL-2 Package: ncdf4.helpers @@ -1250,16 +1334,17 @@ License: CC0 Package: openair Version: 2.4-2 Depends: R (>= 3.2.0), -Imports: grid, rlang, dplyr, purrr, tidyr, mgcv, lattice, latticeExtra, lubridate, - cluster, RColorBrewer, mapproj, hexbin, Rcpp, grDevices, graphics, methods, - stats, MASS, utils +Imports: grid, rlang, dplyr, purrr, tidyr, mgcv, lattice, + latticeExtra, lubridate, cluster, RColorBrewer, mapproj, + hexbin, Rcpp, grDevices, graphics, methods, stats, MASS, + utils LinkingTo: Rcpp Suggests: KernSmooth, maps, mapdata, quantreg License: GPL (>= 2) Archs: i386, x64 Package: openssl -Version: 1.0.1 +Version: 1.0.2 Suggests: testthat, digest, knitr, rmarkdown, jsonlite, jose License: MIT + file LICENSE Archs: i386, x64 @@ -1288,13 +1373,13 @@ Archs: i386, x64 Package: pillar Version: 1.3.0 -Imports: cli (>= 1.0.0), crayon (>= 1.3.4), fansi, methods, rlang (>= 0.2.0), utf8 (>= - 1.1.3) +Imports: cli (>= 1.0.0), crayon (>= 1.3.4), fansi, methods, + rlang (>= 0.2.0), utf8 (>= 1.1.3) Suggests: knitr (>= 1.19), lubridate, testthat (>= 2.0.0), withr License: GPL-3 Package: pkgconfig -Version: 2.0.1 +Version: 2.0.2 Imports: utils Suggests: covr, testthat, disposables (>= 1.0.3) License: MIT + file LICENSE @@ -1307,13 +1392,15 @@ License: MIT + file LICENSE Package: plotly Version: 4.8.0 Depends: R (>= 3.2.0), ggplot2 (>= 3.0.0) -Imports: tools, scales, httr, jsonlite, magrittr, digest, viridisLite, base64enc, - htmltools, htmlwidgets (>= 1.2), tidyr, hexbin, RColorBrewer, dplyr, tibble, - lazyeval (>= 0.2.0), rlang, crosstalk, purrr, data.table, promises -Suggests: MASS, maps, ggthemes, GGally, testthat, knitr, devtools, shiny (>= 1.1.0), - curl, rmarkdown, Rserve, RSclient, Cairo, broom, webshot, listviewer, - dendextend, sf, maptools, rgeos, png, IRdisplay, processx, plotlyGeoAssets, - forcats +Imports: tools, scales, httr, jsonlite, magrittr, digest, + viridisLite, base64enc, htmltools, htmlwidgets (>= 1.2), + tidyr, hexbin, RColorBrewer, dplyr, tibble, lazyeval (>= + 0.2.0), rlang, crosstalk, purrr, data.table, promises +Suggests: MASS, maps, ggthemes, GGally, testthat, knitr, + devtools, shiny (>= 1.1.0), curl, rmarkdown, Rserve, + RSclient, Cairo, broom, webshot, listviewer, dendextend, + sf, maptools, rgeos, png, IRdisplay, processx, + plotlyGeoAssets, forcats License: MIT + file LICENSE Package: plotrix @@ -1326,7 +1413,8 @@ Version: 1.8.4 Depends: R (>= 3.1.0) Imports: Rcpp (>= 0.11.0) LinkingTo: Rcpp -Suggests: abind, testthat, tcltk, foreach, doParallel, itertools, iterators, covr +Suggests: abind, testthat, tcltk, foreach, doParallel, + itertools, iterators, covr License: MIT + file LICENSE Archs: i386, x64 @@ -1340,10 +1428,12 @@ Package: prediction Version: 0.3.6 Imports: utils, stats, data.table Suggests: datasets, methods, testthat -Enhances: AER, aod, betareg, bigFastlm, biglm, brglm, caret, crch, e1071, earth, ff, - ffbase, gam (>= 1.15), gee, glmnet, glmx, kernlab, lme4, MASS, mclogit, mda, - mlogit, mnlogit, MNP, nlme, nnet, ordinal, plm, pscl, quantreg, rpart, - sampleSelection, speedglm, survey (>= 3.31-5), survival, truncreg, VGAM +Enhances: AER, aod, betareg, bigFastlm, biglm, brglm, caret, + crch, e1071, earth, ff, ffbase, gam (>= 1.15), gee, + glmnet, glmx, kernlab, lme4, MASS, mclogit, mda, mlogit, + mnlogit, MNP, nlme, nnet, ordinal, plm, pscl, quantreg, + rpart, sampleSelection, speedglm, survey (>= 3.31-5), + survival, truncreg, VGAM License: MIT + file LICENSE Package: prettyunits @@ -1369,7 +1459,8 @@ Archs: i386, x64 Package: psych Version: 1.8.4 Depends: R (>= 2.10) -Imports: mnormt,parallel,stats,graphics,grDevices,methods,foreign,lattice,nlme +Imports: + mnormt,parallel,stats,graphics,grDevices,methods,foreign,lattice,nlme Suggests: GPArotation, lavaan, sem, lme4,Rcsdp, graph, Rgraphviz License: GPL (>= 2) @@ -1391,16 +1482,18 @@ Package: quantreg Version: 5.36 Depends: R (>= 2.6), stats, SparseM Imports: methods, graphics, Matrix, MatrixModels -Suggests: tripack, akima, MASS, survival, rgl, logspline, nor1mix, Formula, zoo +Suggests: tripack, akima, MASS, survival, rgl, logspline, + nor1mix, Formula, zoo License: GPL (>= 2) Archs: i386, x64 Package: questionr Version: 0.6.3 Depends: R (>= 2.10) -Imports: shiny (>= 1.0.5), miniUI, rstudioapi, highr, classInt, htmltools, graphics, - stats, utils, labelled (>= 1.0.0) -Suggests: memisc, testthat, roxygen2, dplyr, tidyr, janitor, forcats, knitr +Imports: shiny (>= 1.0.5), miniUI, rstudioapi, highr, classInt, + htmltools, graphics, stats, utils, labelled (>= 1.0.0) +Suggests: memisc, testthat, roxygen2, dplyr, tidyr, janitor, + forcats, knitr License: GPL (>= 2) Package: R.methodsS3 @@ -1427,8 +1520,8 @@ Version: 2.6-7 Depends: methods, sp (>= 1.2-0), R (>= 3.0.0) Imports: Rcpp LinkingTo: Rcpp -Suggests: rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf4, igraph, tcltk, parallel, rasterVis, - MASS, sf +Suggests: rgdal (>= 0.9-1), rgeos (>= 0.3-8), ncdf4, igraph, + tcltk, parallel, rasterVis, MASS, sf License: GPL (>= 3) Archs: i386, x64 @@ -1441,7 +1534,8 @@ Package: Rcpp Version: 0.12.18 Depends: R (>= 3.0.0) Imports: methods, utils -Suggests: RUnit, inline, rbenchmark, knitr, rmarkdown, pinp, pkgKitten (>= 0.1.2) +Suggests: RUnit, inline, rbenchmark, knitr, rmarkdown, pinp, + pkgKitten (>= 0.1.2) License: GPL (>= 2) Archs: i386, x64 @@ -1510,10 +1604,12 @@ Archs: i386, x64 Package: rio Version: 0.5.10 Depends: R (>= 2.15.0) -Imports: tools, stats, utils, foreign, haven (>= 1.1.0), curl (>= 0.6), data.table (>= - 1.9.8), readxl (>= 0.1.1), openxlsx, tibble -Suggests: datasets, bit64, testthat, knitr, magrittr, clipr, csvy, feather, fst, - jsonlite, readODS (>= 1.6.4), readr, rmatio, xml2 (>= 1.2.0), yaml +Imports: tools, stats, utils, foreign, haven (>= 1.1.0), curl + (>= 0.6), data.table (>= 1.9.8), readxl (>= 0.1.1), + openxlsx, tibble +Suggests: datasets, bit64, testthat, knitr, magrittr, clipr, + csvy, feather, fst, jsonlite, readODS (>= 1.6.4), readr, + rmatio, xml2 (>= 1.2.0), yaml License: GPL-2 Package: rje @@ -1525,7 +1621,8 @@ Archs: i386, x64 Package: rlang Version: 0.2.1 Depends: R (>= 3.1.0) -Suggests: crayon, knitr, methods, pillar, rmarkdown (>= 0.2.65), testthat, covr +Suggests: crayon, knitr, methods, pillar, rmarkdown (>= 0.2.65), + testthat, covr License: GPL-3 Archs: i386, x64 @@ -1551,12 +1648,12 @@ License: GPL (>= 2) | file LICENSE Archs: i386, x64 Package: robustbase -Version: 0.93-1.1 -Depends: R (>= 3.0.2) +Version: 0.93-2 +Depends: R (>= 3.1.0) Imports: stats, graphics, utils, methods, DEoptimR -Suggests: grid, MASS, lattice, boot, cluster, Matrix, robust, fit.models, MPV, xtable, - ggplot2, GGally, RColorBrewer, reshape2, sfsmisc, catdata, doParallel, foreach, - skewt +Suggests: grid, MASS, lattice, boot, cluster, Matrix, robust, + fit.models, MPV, xtable, ggplot2, GGally, RColorBrewer, + reshape2, sfsmisc, catdata, doParallel, foreach, skewt License: GPL (>= 2) Archs: i386, x64 @@ -1603,16 +1700,18 @@ Package: sandwich Version: 2.4-0 Depends: R (>= 2.10.0) Imports: stats, utils, zoo -Suggests: AER, car, geepack, lattice, lmtest, MASS, multiwayvcov, pcse, plm, pscl, - scatterplot3d, stats4, strucchange, survival +Suggests: AER, car, geepack, lattice, lmtest, MASS, + multiwayvcov, pcse, plm, pscl, scatterplot3d, stats4, + strucchange, survival License: GPL-2 | GPL-3 Package: scales -Version: 0.5.0 -Depends: R (>= 2.13) -Imports: RColorBrewer, dichromat, plyr, munsell (>= 0.2), labeling, Rcpp, R6, viridisLite +Version: 1.0.0 +Depends: R (>= 3.1) +Imports: labeling, munsell (>= 0.5), R6, RColorBrewer, Rcpp, + viridisLite LinkingTo: Rcpp -Suggests: testthat (>= 0.8), bit64, covr, hms +Suggests: dichromat, bit64, covr, hms, testthat (>= 2.0) License: MIT + file LICENSE Archs: i386, x64 @@ -1625,13 +1724,15 @@ License: GPL-2 Package: sf Version: 0.6-3 Depends: R (>= 3.3.0), methods -Imports: utils, stats, tools, graphics, grDevices, grid, Rcpp, DBI (>= 0.8), units (>= - 0.5-1), classInt, magrittr +Imports: utils, stats, tools, graphics, grDevices, grid, Rcpp, + DBI (>= 0.8), units (>= 0.5-1), classInt, magrittr LinkingTo: Rcpp -Suggests: lwgeom (>= 0.1-2), maps, rgdal, rgeos, sp (>= 1.2-4), raster, spatstat, tmap, - maptools, RSQLite, tibble (>= 1.4.1), pillar, rlang, dplyr (>= 0.7-0), tidyr - (>= 0.7-2), RPostgreSQL, RPostgres (>= 1.1.0), odbc, tidyselect, ggplot2, - mapview, testthat, knitr, covr, microbenchmark, rmarkdown +Suggests: lwgeom (>= 0.1-2), maps, rgdal, rgeos, sp (>= 1.2-4), + raster, spatstat, tmap, maptools, RSQLite, tibble (>= + 1.4.1), pillar, rlang, dplyr (>= 0.7-0), tidyr (>= + 0.7-2), RPostgreSQL, RPostgres (>= 1.1.0), odbc, + tidyselect, ggplot2, mapview, testthat, knitr, covr, + microbenchmark, rmarkdown License: GPL-2 | MIT + file LICENSE Archs: i386, x64 @@ -1644,11 +1745,12 @@ License: GPL (>= 3) Package: shiny Version: 1.1.0 Depends: R (>= 3.0.2), methods -Imports: utils, grDevices, httpuv (>= 1.4.3), mime (>= 0.3), jsonlite (>= 0.9.16), - xtable, digest, htmltools (>= 0.3.5), R6 (>= 2.0), sourcetools, later (>= - 0.7.2), promises (>= 1.0.1), tools, crayon, rlang -Suggests: datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6), markdown, rmarkdown, - ggplot2, magrittr +Imports: utils, grDevices, httpuv (>= 1.4.3), mime (>= 0.3), + jsonlite (>= 0.9.16), xtable, digest, htmltools (>= + 0.3.5), R6 (>= 2.0), sourcetools, later (>= 0.7.2), + promises (>= 1.0.1), tools, crayon, rlang +Suggests: datasets, Cairo (>= 1.5-5), testthat, knitr (>= 1.6), + markdown, rmarkdown, ggplot2, magrittr License: GPL-3 | file LICENSE Package: signmedian.test @@ -1656,50 +1758,57 @@ Version: 1.5.1 License: GPL-2 Package: sjlabelled -Version: 1.0.12 +Version: 1.0.13 Depends: R (>= 3.2), stats -Imports: broom (>= 0.4.5), dplyr (>= 0.7.1), haven (>= 1.1.2), magrittr, prediction, - purrr (>= 0.2.2.2), rlang, snakecase (>= 0.8.1), tibble (>= 1.3.3), tidyselect, - utils -Suggests: ggplot2, glmmTMB, Hmisc, sjmisc, sjPlot, survey, knitr, rmarkdown, Zelig +Imports: broom (>= 0.4.5), dplyr, haven (>= 1.1.2), magrittr, + prediction, purrr, rlang, snakecase, tibble, tidyselect, + utils +Suggests: ggplot2, glmmTMB, Hmisc, sjmisc, sjPlot, survey, + knitr, rmarkdown, Zelig License: GPL-3 Package: sjmisc -Version: 2.7.3 +Version: 2.7.4 Depends: R (>= 3.2), stats, utils -Imports: broom (>= 0.4.2), crayon, dplyr (>= 0.7.1), haven (>= 1.0.0), magrittr, pillar, - purrr, rlang, sjlabelled (>= 1.0.8), stringdist (>= 0.9.4), stringr (>= 1.2.0), - tibble (>= 1.4.1), tidyr (>= 0.7.0), tidyselect -Suggests: ggplot2, graphics, mice, sjPlot (>= 2.4.0), sjstats (>= 0.13.0), knitr, - rmarkdown, testthat +Imports: broom (>= 0.4.5), crayon, dplyr, haven (>= 1.1.2), + magrittr, pillar, purrr, rlang, sjlabelled (>= 1.0.12), + stringdist (>= 0.9.4), stringr (>= 1.2.0), tibble, tidyr, + tidyselect +Suggests: ggplot2, graphics, mice, sjPlot, sjstats, knitr, + rmarkdown, testthat License: GPL-3 Package: sjPlot Version: 2.5.0 Depends: R (>= 3.2), graphics, grDevices, stats, utils -Imports: arm, broom (>= 0.4.5), dplyr (>= 0.7.5), effects, forcats, ggeffects (>= 0.4.0), - glmmTMB, ggplot2 (>= 2.2.1), knitr, lme4 (>= 1.1-12), magrittr, MASS, modelr, - nlme, psych, purrr, rlang, scales, sjlabelled (>= 1.0.12), sjmisc (>= 2.7.3), - sjstats (>= 0.15.0), tidyselect, tibble (>= 1.3.3), tidyr (>= 0.7.0) -Suggests: AICcmodavg, brms, car, cluster, GPArotation, gridExtra, ggrepel, ggridges, - pscl, rstanarm, survey, TMB, viridis, wesanderson, Zelig +Imports: arm, broom (>= 0.4.5), dplyr (>= 0.7.5), effects, + forcats, ggeffects (>= 0.4.0), glmmTMB, ggplot2 (>= + 2.2.1), knitr, lme4 (>= 1.1-12), magrittr, MASS, modelr, + nlme, psych, purrr, rlang, scales, sjlabelled (>= + 1.0.12), sjmisc (>= 2.7.3), sjstats (>= 0.15.0), + tidyselect, tibble (>= 1.3.3), tidyr (>= 0.7.0) +Suggests: AICcmodavg, brms, car, cluster, GPArotation, + gridExtra, ggrepel, ggridges, pscl, rstanarm, survey, + TMB, viridis, wesanderson, Zelig License: GPL-3 Package: sjstats Version: 0.16.0 Depends: R (>= 3.2), stats, utils -Imports: bayesplot, broom (>= 0.4.5), coin, crayon, dplyr (>= 0.7.1), emmeans, lme4 (>= - 1.1-12), lmtest (>= 0.9-34), glmmTMB (>= 0.2.2.0), magrittr, MASS, Matrix, - modelr, nlme, prediction, purrr (>= 0.2.2), pwr, rlang, sandwich (>= 2.3-4), - sjlabelled (>= 1.0.11), sjmisc (>= 2.7.3), tidyr (>= 0.7.0), tidyselect, tibble - (>= 1.3.3) -Suggests: AER, arm, brms, car, ggplot2, ggridges, graphics, knitr, loo, mediation, - pbkrtest (>= 0.4-7), pROC, psych, scales, splines, sjPlot, survey, rstan, - rstantools, rstanarm, VGAM, Zelig +Imports: bayesplot, broom (>= 0.4.5), coin, crayon, dplyr (>= + 0.7.1), emmeans, lme4 (>= 1.1-12), lmtest (>= 0.9-34), + glmmTMB (>= 0.2.2.0), magrittr, MASS, Matrix, modelr, + nlme, prediction, purrr (>= 0.2.2), pwr, rlang, sandwich + (>= 2.3-4), sjlabelled (>= 1.0.11), sjmisc (>= 2.7.3), + tidyr (>= 0.7.0), tidyselect, tibble (>= 1.3.3) +Suggests: AER, arm, brms, car, ggplot2, ggridges, graphics, + knitr, loo, mediation, pbkrtest (>= 0.4-7), pROC, psych, + scales, splines, sjPlot, survey, rstan, rstantools, + rstanarm, VGAM, Zelig License: GPL-3 Package: snakecase -Version: 0.9.1 +Version: 0.9.2 Depends: R (>= 3.1) Imports: stringr, stringi Suggests: testthat, covr, tibble, purrrlyr, knitr, rmarkdown @@ -1716,14 +1825,16 @@ Package: sp Version: 1.3-1 Depends: R (>= 3.0.0), methods Imports: utils, stats, graphics, grDevices, lattice, grid -Suggests: RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.3-13), gstat, maptools, deldir +Suggests: RColorBrewer, rgdal (>= 0.8-7), rgeos (>= 0.3-13), + gstat, maptools, deldir License: GPL (>= 2) Archs: i386, x64 Package: spam Version: 2.2-0 Depends: R (>= 3.1), dotCall64, grid, methods -Suggests: spam64, fields, SparseM, Matrix, testthat, R.rsp, truncdist +Suggests: spam64, fields, SparseM, Matrix, testthat, R.rsp, + truncdist License: LGPL-2 | BSD_3_clause + file LICENSE Archs: i386, x64 @@ -1735,18 +1846,22 @@ License: GPL (>= 2) Archs: i386, x64 Package: spData -Version: 0.2.9.0 +Version: 0.2.9.3 Depends: R (>= 3.3.0) -Suggests: foreign, maptools, raster, rgdal, sf, sp, spDataLarge (>= 0.2.7.0), spdep +Suggests: foreign, maptools, raster, rgdal, sf, sp, spDataLarge + (>= 0.2.7.1), spdep License: CC0 Package: spdep -Version: 0.7-7 -Depends: R (>= 3.0.0), methods, sp (>= 1.0), Matrix (>= 1.0.12), spData (>= 0.2.6.0) -Imports: LearnBayes, deldir, boot (>= 1.3-1), splines, coda, nlme, MASS, stats, gmodels, - expm, graphics, grDevices, utils -Suggests: sf, parallel, spam(>= 0.13-1), RANN, rgeos, RColorBrewer, lattice, xtable, - maptools (>= 0.5-4), foreign, igraph, knitr, rgdal, classInt +Version: 0.7-8 +Depends: R (>= 3.3.0), methods, sp (>= 1.0), Matrix (>= 1.0.12), + spData (>= 0.2.6.0) +Imports: LearnBayes, deldir, boot (>= 1.3-1), splines, coda, + nlme, MASS, stats, gmodels, expm, graphics, grDevices, + utils +Suggests: sf, parallel, spam(>= 2.1-0), RANN, rgeos, + RColorBrewer, lattice, xtable, maptools (>= 0.5-4), + foreign, igraph, knitr, rgdal, classInt License: GPL (>= 2) Archs: i386, x64 @@ -1775,15 +1890,16 @@ Package: stringr Version: 1.3.1 Depends: R (>= 3.1) Imports: glue (>= 1.2.0), magrittr, stringi (>= 1.1.7) -Suggests: covr, htmltools, htmlwidgets, knitr, rmarkdown, testthat +Suggests: covr, htmltools, htmlwidgets, knitr, rmarkdown, + testthat License: GPL-2 | file LICENSE Package: survey Version: 3.33-2 Depends: R (>= 2.16.0), grid, methods, Matrix, survival Imports: stats, graphics, splines, lattice -Suggests: foreign, MASS, KernSmooth, hexbin, mitools, RSQLite, RODBC, quantreg, parallel, - CompQuadForm, DBI +Suggests: foreign, MASS, KernSmooth, hexbin, mitools, RSQLite, + RODBC, quantreg, parallel, CompQuadForm, DBI License: GPL-2 | GPL-3 Package: survival @@ -1799,8 +1915,8 @@ Version: 1.2.1 Depends: R (>= 3.0.0) Imports: Rcpp, gdtools (>= 0.1.6) LinkingTo: Rcpp, gdtools, BH -Suggests: htmltools, testthat, xml2 (>= 1.0.0), covr, fontquiver (>= 0.2.0), knitr, - rmarkdown +Suggests: htmltools, testthat, xml2 (>= 1.0.0), covr, fontquiver + (>= 0.2.0), knitr, rmarkdown License: GPL (>= 2) Archs: i386, x64 @@ -1814,16 +1930,17 @@ Package: tibble Version: 1.4.2 Depends: R (>= 3.1.0) Imports: cli, crayon, methods, pillar (>= 1.1.0), rlang, utils -Suggests: covr, dplyr, import, knitr (>= 1.5.32), microbenchmark, mockr, nycflights13, - rmarkdown, testthat, withr +Suggests: covr, dplyr, import, knitr (>= 1.5.32), + microbenchmark, mockr, nycflights13, rmarkdown, testthat, + withr License: MIT + file LICENSE Archs: i386, x64 Package: tidyr Version: 0.8.1 Depends: R (>= 3.1) -Imports: dplyr (>= 0.7.0), glue, magrittr, purrr, Rcpp, rlang, stringi, tibble, - tidyselect +Imports: dplyr (>= 0.7.0), glue, magrittr, purrr, Rcpp, rlang, + stringi, tibble, tidyselect LinkingTo: Rcpp Suggests: covr, gapminder, knitr, rmarkdown, testthat License: MIT + file LICENSE @@ -1858,8 +1975,8 @@ Version: 0.6-0 Depends: R (>= 3.0.0) Imports: Rcpp LinkingTo: Rcpp -Suggests: udunits2, NISTunits, measurements, xml2, tibble, pillar, knitr, testthat, - ggforce, rmarkdown, magrittr +Suggests: udunits2, NISTunits, measurements, xml2, tibble, + pillar, knitr, testthat, ggforce, rmarkdown, magrittr License: GPL-2 Archs: i386, x64 @@ -1874,8 +1991,9 @@ Package: viridis Version: 0.5.1 Depends: R (>= 2.10), viridisLite (>= 0.3.0) Imports: stats, ggplot2 (>= 1.0.1), gridExtra -Suggests: hexbin (>= 1.27.0), scales, MASS, knitr, dichromat, colorspace, rasterVis, - httr, mapproj, vdiffr, svglite (>= 1.2.0), testthat, covr, rmarkdown, rgdal +Suggests: hexbin (>= 1.27.0), scales, MASS, knitr, dichromat, + colorspace, rasterVis, httr, mapproj, vdiffr, svglite (>= + 1.2.0), testthat, covr, rmarkdown, rgdal License: MIT + file LICENSE Package: viridisLite @@ -1898,6 +2016,12 @@ Imports: chron, ggplot2, dplyr, stringi Suggests: testthat License: GPL-2 +Package: weathermetrics +Version: 1.2.2 +Depends: R (>= 2.10) +Suggests: knitr, rmarkdown +License: GPL-2 + Package: whisker Version: 0.3-2 Suggests: markdown @@ -1907,11 +2031,12 @@ Package: withr Version: 2.1.2 Depends: R (>= 3.0.2) Imports: stats, graphics, grDevices -Suggests: testthat, covr, lattice, DBI, RSQLite, methods, knitr, rmarkdown +Suggests: testthat, covr, lattice, DBI, RSQLite, methods, knitr, + rmarkdown License: GPL (>= 2) Package: XML -Version: 3.98-1.12 +Version: 3.98-1.15 Depends: R (>= 2.13.0), methods, utils Suggests: bitops, RCurl License: BSD_2_clause + file LICENSE @@ -1934,8 +2059,8 @@ Suggests: knitr, lsmeans, spdep, splm, sphet, plm, zoo, survival License: GPL (>= 2) Package: yaml -Version: 2.1.19 -Suggests: testthat +Version: 2.2.0 +Suggests: RUnit License: BSD_3_clause + file LICENSE Archs: i386, x64 @@ -1949,7 +2074,7 @@ Package: zoo Version: 1.8-3 Depends: R (>= 3.1.0), stats Imports: utils, graphics, grDevices, lattice (>= 0.20-27) -Suggests: coda, chron, DAAG, fts, ggplot2, mondate, scales, strucchange, timeDate, - timeSeries, tis, tseries, xts +Suggests: coda, chron, DAAG, fts, ggplot2, mondate, scales, + strucchange, timeDate, timeSeries, tis, tseries, xts License: GPL-2 | GPL-3 Archs: i386, x64 diff --git a/instat/static/InstatObject/R/extras/bin/windows/contrib/3.4/PACKAGES.gz 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"extRemes", "GGally", "agridat", "DAAG", "FactoMineR", "plotrix", "candisc", "R6", "openair", "circular", "survival", "Evapotranspiration", "clifro", "devtools", "factoextra", "circlize", "CircStats", "gridExtra", "ggfortify", "rio", "readxl", "lme4", "dummies", "ggthemes", "lazyeval", "stringr", "httr", "jsonlite", "fitdistrplus", "visreg", "climdex.pcic", "mosaic", "ncdf4", "getPass", "RMySQL", "DBI", "EnvStats", "signmedian.test", "sjPlot", "sjmisc", "plotly", "svglite", "htmlTable", "rje", "tidyr", "faraway", "ncdf.tools", "rrefine", "dae", "gapminder", "questionr", "nycflights13", "Lahman", "ncdf4.helpers", "RcppRoll", "cmsaf", "sjlabelled", "maptools", "RColorBrewer", "colorRamps", "mapdata", "rworldmap", "rworldxtra", "e1071", "robustbase", "wakefield", "Hmisc", "SPEI", "agricolae", "sf") +pkgs <- c("reshape2", "lubridate","plyr", "dplyr", "rtf", "openxlsx", "ggplot2", "extRemes", "GGally", "agridat", "DAAG", "FactoMineR", "plotrix", "candisc", "R6", "openair", "circular", "survival", "Evapotranspiration", "clifro", "devtools", "factoextra", "circlize", "CircStats", "gridExtra", "ggfortify", "rio", "readxl", "lme4", "dummies", "ggthemes", "lazyeval", "stringr", "httr", "jsonlite", "fitdistrplus", "visreg", "climdex.pcic", "mosaic", "ncdf4", "getPass", "RMySQL", "DBI", "EnvStats", "signmedian.test", "sjPlot", "sjmisc", "plotly", "svglite", "htmlTable", "rje", "tidyr", "faraway", "ncdf.tools", "rrefine", "dae", "gapminder", "questionr", "nycflights13", "Lahman", "ncdf4.helpers", "RcppRoll", "cmsaf", "sjlabelled", "maptools", "RColorBrewer", "colorRamps", "mapdata", "rworldmap", "rworldxtra", "e1071", "robustbase", "wakefield", "Hmisc", "SPEI", "agricolae", "sf", "weathermetrics", "geosphere") pkgList <- pkgDep(pkgs, type="win.binary", repos = "https://cran.rstudio.com/", suggests = FALSE, includeBasePkgs = FALSE, Rversion = "3.4") pth = "C:/Users/Danny/Documents/RPackages" makeRepo(pkgList, path = pth, type = "win.binary", Rversion = "3.4", repos = "https://cran.rstudio.com/")