.gitignore

##############
# R and RStudio files.
.Rhistory
.RData
.Rproj.user
.Rproj.user/

##############
# Protected Information; see cubuspl42's answer in http://stackoverflow.com/questions/2415873/exceptions-in-gitignore
/unshared_material/*
/data_unshared/*
/data-unshared/*
/data/unshared/*
/sandbox/syntax-creator/data/unshared/*
/sandbox/syntax-creator/outputs/*/*.dat




# Dataset Exceptions
!utility/package-dependency-list.csv

# Keep the README files in the unshared directories.  They provide documentation, and also force the directories to be created on other machines.
# Depending on how you do it, you might need to add w/ the command line (eg, git add -f ./data_unshared/raw/README.md)
!README.md
!data_unshared/contents.md
!data_unshared/raw/README.md
!data_unshared/derived/README.md
!data/unshared/contents.md
!data/unshared/raw/README.md
!data/unshared/derived/README.md

##############
# Misc files

# READMEs created by knitr.  The markdown file should be the only version for a given directory.
README.html

# Unnecessary files from knitr reports

##############
# Windows
# Cached small image files
Thumbs.db
# Folder config file
Desktop.ini
ialsa-2015-portland-stencil.Rproj

##############
# Exceptions
!/data/README.md
!/data/*/README.md
!/data/*/*/README.md
!/data/*/*/*/README.md
!/data/*/*/*/*/README.md
manipulation/translator-support/outputs/grip-numbercomp/long-dataset.dat
*.dat
*.gh5
*.inp
sandbox/pipeline-demo-1/outputs/generic-data/data-long.rds
sandbox/pipeline-demo-1/outputs/generic-data/data-wide.rds
data/shared/derived/ls_catalog.rds
data/shared/derived/ls_catalog.rds
libs/papers/timmons_preacher_(customizable.r.code).pdf
libs/papers/timmons_preacher_(pairwise.comparisons).pdf
libs/papers/timmons_preacher_2015.pdf