New alignment methods #142
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| # Workflow name | |
| name: Build Xmipp | |
| # Specify when the Action should be triggered: when a pull request is opened against the 'devel' or 'master' branch | |
| on: | |
| pull_request: | |
| branches: [devel, master] | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-22.04 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| # Disabling shallow clone is recommended for improving relevancy of reporting | |
| steps: | |
| # Installing apt dependencies | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libfftw3-dev libopenmpi-dev libhdf5-dev libtiff5-dev python3-numpy python3-dev libsqlite3-dev default-jdk git cmake libopencv-dev openmpi-bin | |
| # Setting up Python | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9.15' # Version range or exact version of a Python version to use, using SemVer's version range syntax | |
| # Installing Python dependencies | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install scons numpy | |
| # Installing CUDA | |
| - uses: Jimver/[email protected] | |
| id: cuda-toolkit | |
| with: | |
| cuda: '11.7.0' | |
| linux-local-args: '[ "--toolkit" ]' | |
| # Using CCache to speed C/C++ compilation | |
| - name: Install ccache | |
| uses: hendrikmuhs/[email protected] | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # Compiling Xmipp in the Pull Request branch | |
| - name: Compile Xmipp | |
| env: | |
| CIBuild: 1 | |
| BUILD_TESTS: True | |
| run: ./xmipp noAsk |