Merge pull request pierrepo#131 from HubLot/conda

conda package

.gitignore

@@ -31,3 +31,6 @@ eggs
 # Unit test / coverage reports
 .coverage
 nosetests.xml
+# conda
+devtools/conda/*.json
+

CHANGELOG

@@ -1,3 +1,8 @@
+Dev
+- add some unit tests
+- add a function test() within the root path of PBxplore
+- add a Release file
+
 1.3.1
 - remove pbxplore import from setup.py and add version number
 

devtools/RELEASE.md

@@ -0,0 +1,28 @@
+## How to release
+
+#### Update version number
+
+
+#### Publish Documentation
+
+
+#### Publish on Pypi
+
+
+#### Publish on Conda
+
+1. Build the package (inside `conda` directory)
+
+    conda build --python 2.7 --python 3.3 --python 3.4 --python 3.5 -c bioconda -c mdanalysis pbxplore
+
+2. The path of the created archive will be given at the end of the process
+
+3. Convert it for all plateforms (where `X.X.X` is the pbxplore version and `YY` is the Python version)
+
+    conda convert --platform all /path/to/archive/pbxplore-X.X.X-pyYY_0.tar.bz2
+
+4. Upload it to anaconda
+
+    anaconda upload /path/to/archive/pbxplore-X.X.X-pyYY_0.tar.bz2
+
+This has to be done for each package created.

devtools/conda/pbxplore/bld.bat

@@ -0,0 +1,8 @@
+"%PYTHON%" setup.py install
+if errorlevel 1 exit 1
+
+:: Add more build steps here, if they are necessary.
+
+:: See
+:: http://docs.continuum.io/conda/build.html
+:: for a list of environment variables that are set during the build process.

devtools/conda/pbxplore/build.sh

@@ -0,0 +1,9 @@
+#!/bin/bash
+
+$PYTHON setup.py install
+
+# Add more build steps here, if they are necessary.
+
+# See
+# http://docs.continuum.io/conda/build.html
+# for a list of environment variables that are set during the build process.

devtools/conda/pbxplore/meta.yaml

@@ -0,0 +1,64 @@
+package:
+  name: pbxplore
+  version: "1.3.1"
+
+source:
+  git_url: https://github.com/pierrepo/PBxplore
+  git_branch: master
+
+build:
+  entry_points:
+    - PBassign = pbxplore.scripts.PBassign:pbassign_cli
+    - PBclust  = pbxplore.scripts.PBclust:pbclust_cli
+    - PBcount  = pbxplore.scripts.PBcount:pbcount_cli
+    - PBstat   = pbxplore.scripts.PBstat:pbstat_cli
+    - PBdata   = pbxplore.scripts.PBdata:pbdata_cli
+
+
+requirements:
+  build:
+    - python
+    - setuptools
+    - numpy
+    - matplotlib
+    - python-weblogo
+    - mdanalysis >=0.11
+
+  run:
+    - python
+    - numpy
+    - matplotlib
+    - python-weblogo
+    - mdanalysis >=0.11
+
+test:
+  imports:
+    - pbxplore
+    - pbxplore.analysis
+    - pbxplore.demo
+    - pbxplore.io
+    - pbxplore.structure
+    - pbxplore.tests
+
+  commands:
+    - PBassign --help
+    - PBclust --help
+    - PBcount --help
+    - PBstat --help
+    - PBdata --help
+    - python -c 'import pbxplore; pbxplore.test()'
+
+
+  requires:
+    - coverage
+    - nose
+
+about:
+  home: https://github.com/pierrepo/PBxplore
+  license: MIT License
+  license_file: LICENSE
+  summary: 'PBxplore is a suite of tools dedicated to Protein Block analysis.'
+
+# See
+# http://docs.continuum.io/conda/build.html for
+# more information about meta.yaml