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testsuite.yml
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name: Run Tests
on: [push, pull_request]
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
jobs:
tests:
env:
ENV_NAME: tests
PYTHON: ${{ matrix.python-version }}
WITH_SUDO: yes
OS: ${{ matrix.os }}
# use localhost for the host here because we are running the job on the VM.
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
name: Testing
runs-on: ${{ matrix.os }}
defaults:
run:
# Adding -l {0} helps ensure conda can be found properly.
shell: bash -l {0}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest]
python-version: [3.8, 3.9, "3.10"]
services:
postgres:
image: postgres:10.8
env:
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
# will assign a random free host port
- 5432:5432
# needed because the postgres container does not provide a healthcheck
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
redis:
image: redis
env:
REDIS_HOST: redishost
ports:
- 6379:6379
options: --entrypoint redis-server --network-alias $REDIS_HOST -v /data:/data --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- uses: actions/checkout@master
with:
fetch-depth: 1
- name: Setup Minimamba
uses: conda-incubator/[email protected]
with:
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
python-version: ${{ env.PYTHON }}
environment-file: ci/${{ env.ENV_NAME }}.yaml
activate-environment: ${{ env.ENV_NAME }}
- name: Conda Info
run: |
conda info -a
conda list
PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
if [[ $PYVER != ${{ env.PYTHON }} ]]; then
exit 1;
fi
- name: Install
run: |
pip install --no-deps .
- name: Setup postgres
run: |
export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB
psql $POSTGRES_URL -c 'create database hera_mc_test;'
psql $POSTGRES_URL -c 'create database hera_mc;'
psql $POSTGRES_URL -c "create user hera with password 'hera';"
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Upgrade Database Schema
run: |
mkdir ~/.hera_mc
cp ci/example_config.json ~/.hera_mc/mc_config.json
alembic upgrade head
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Initialize Redis
# Grab the name of the redis container with bash magic
# stop the container, replace the dump file with our save file
# add the IP to the hosts file to preserve some hardcoded defaults
run: |
DOCKER_NAME=`/usr/bin/docker ps -a --filter="ancestor=redis" --format='{{.Names}}'`
/usr/bin/docker stop $DOCKER_NAME
sudo rm /data/dump.rdb
sudo cp hera_mc/data/test_data/dump.rdb /data
/usr/bin/docker start $DOCKER_NAME
DOCKER_IP=`docker inspect -f '{{range .NetworkSettings.Networks}}{{.IPAddress}}{{end}}' $DOCKER_NAME`
echo "$DOCKER_IP redishost" | sudo tee -a /etc/hosts
- name: Run Tests
run: |
python -m pytest --cov=hera_mc --cov-config=.coveragerc --cov-report xml:./coverage.xml --junitxml=test-reports/xunit.xml
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- uses: codecov/[email protected]
if: matrix.os == 'ubuntu-latest' && success()
with:
token: ${{secrets.CODECOV_TOKEN}} #required
file: ./coverage.xml #optional
min_deps:
env:
ENV_NAME: min_deps
PYTHON: 3.9
WITH_SUDO: yes
# use localhost for the host here because we are running the job on the VM.
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
name: min_deps testing
runs-on: ubuntu-latest
defaults:
run:
# Adding -l {0} helps ensure conda can be found properly.
shell: bash -l {0}
strategy:
fail-fast: false
services:
postgres:
image: postgres:10.8
env:
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
# will assign a random free host port
- 5432:5432
# needed because the postgres container does not provide a healthcheck
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- uses: actions/checkout@master
with:
fetch-depth: 1
- name: Setup Minimamba
uses: conda-incubator/[email protected]
with:
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
python-version: ${{ env.PYTHON }}
environment-file: ci/${{ env.ENV_NAME }}.yaml
activate-environment: ${{ env.ENV_NAME }}
- name: Conda Info
run: |
conda info -a
conda list
PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
if [[ $PYVER != ${{ env.PYTHON }} ]]; then
exit 1;
fi
- name: Install
run: |
pip install --no-deps .
- name: Setup postgres
run: |
export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB
psql $POSTGRES_URL -c 'create database hera_mc_test;'
psql $POSTGRES_URL -c 'create database hera_mc;'
psql $POSTGRES_URL -c "create user hera with password 'hera';"
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Upgrade Database Schema
run: |
mkdir ~/.hera_mc
cp ci/example_config.json ~/.hera_mc/mc_config.json
alembic upgrade head
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Run Tests
run: |
mkdir -p empty
cd empty
pytest --pyargs hera_mc --cov=hera_mc --cov-config=../.coveragerc --cov-report xml:../coverage.xml --junitxml=../test-reports/xunit.xml
cd ..
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- uses: codecov/[email protected]
if: success()
with:
token: ${{secrets.CODECOV_TOKEN}} #required
file: ./coverage.xml #optional
min_versions:
env:
ENV_NAME: min_versions
PYTHON: 3.8
WITH_SUDO: yes
# use localhost for the host here because we are running the job on the VM.
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
name: min_versions testing
runs-on: ubuntu-latest
defaults:
run:
# Adding -l {0} helps ensure conda can be found properly.
shell: bash -l {0}
strategy:
fail-fast: false
services:
postgres:
image: postgres:10.8
env:
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
# will assign a random free host port
- 5432:5432
# needed because the postgres container does not provide a healthcheck
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- uses: actions/checkout@master
with:
fetch-depth: 1
- name: Setup Minimamba
uses: conda-incubator/[email protected]
with:
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
python-version: ${{ env.PYTHON }}
environment-file: ci/${{ env.ENV_NAME }}.yaml
activate-environment: ${{ env.ENV_NAME }}
- name: Conda Info
run: |
conda info -a
conda list
PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
if [[ $PYVER != ${{ env.PYTHON }} ]]; then
exit 1;
fi
- name: Install
run: |
pip install --no-deps .
- name: Setup postgres
run: |
export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB
psql $POSTGRES_URL -c 'create database hera_mc_test;'
psql $POSTGRES_URL -c 'create database hera_mc;'
psql $POSTGRES_URL -c "create user hera with password 'hera';"
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Upgrade Database Schema
run: |
mkdir ~/.hera_mc
cp ci/example_config.json ~/.hera_mc/mc_config.json
alembic upgrade head
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Run Tests
run: |
mkdir -p empty
cd empty
pytest --pyargs hera_mc --cov=hera_mc --cov-config=../.coveragerc --cov-report xml:../coverage.xml --junitxml=../test-reports/xunit.xml
cd ..
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- uses: codecov/[email protected]
if: success()
with:
token: ${{secrets.CODECOV_TOKEN}} #required
file: ./coverage.xml #optional
warning_tests:
env:
ENV_NAME: tests
PYTHON: 3.9
WITH_SUDO: yes
# use localhost for the host here because we are running the job on the VM.
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
name: Warnings Test
runs-on: ubuntu-latest
defaults:
run:
# Adding -l {0} helps ensure conda can be found properly.
shell: bash -l {0}
strategy:
fail-fast: false
services:
postgres:
image: postgres:10.8
env:
POSTGRES_HOST: localhost
POSTGRES_USER: postgres
POSTGRES_PASSWORD: postgres
POSTGRES_DB: postgres
ports:
# will assign a random free host port
- 5432:5432
# needed because the postgres container does not provide a healthcheck
options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
redis:
image: redis
env:
REDIS_HOST: redishost
ports:
- 6379:6379
options: --entrypoint redis-server --network-alias $REDIS_HOST -v /data:/data --health-cmd "redis-cli ping" --health-interval 10s --health-timeout 5s --health-retries 5
steps:
- uses: actions/checkout@master
with:
fetch-depth: 0
- name: Setup Minimamba
uses: conda-incubator/[email protected]
with:
miniforge-variant: Mambaforge
miniforge-version: latest
use-mamba: true
python-version: ${{ env.PYTHON }}
environment-file: ci/${{ env.ENV_NAME }}.yaml
activate-environment: ${{ env.ENV_NAME }}
- name: Conda Info
run: |
conda info -a
conda list
PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
if [[ $PYVER != ${{ env.PYTHON }} ]]; then
exit 1;
fi
- name: Install
run: |
pip install --no-deps .
- name: Setup postgres
run: |
export POSTGRES_URL=postgresql://$POSTGRES_USER:$POSTGRES_PASSWORD@$POSTGRES_HOST:$POSTGRES_PORT/$POSTGRES_DB
psql $POSTGRES_URL -c 'create database hera_mc_test;'
psql $POSTGRES_URL -c 'create database hera_mc;'
psql $POSTGRES_URL -c "create user hera with password 'hera';"
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Upgrade Database Schema
run: |
mkdir ~/.hera_mc
cp ci/example_config.json ~/.hera_mc/mc_config.json
alembic upgrade head
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port
- name: Initialize Redis
# Grab the name of the redis container with bash magic
# stop the container, replace the dump file with our save file
# add the IP to the hosts file to preserve some hardcoded defaults
run: |
DOCKER_NAME=`/usr/bin/docker ps -a --filter="ancestor=redis" --format='{{.Names}}'`
/usr/bin/docker stop $DOCKER_NAME
sudo rm /data/dump.rdb
sudo cp hera_mc/data/test_data/dump.rdb /data
/usr/bin/docker start $DOCKER_NAME
DOCKER_IP=`docker inspect -f '{{range .NetworkSettings.Networks}}{{.IPAddress}}{{end}}' $DOCKER_NAME`
echo "$DOCKER_IP redishost" | sudo tee -a /etc/hosts
- name: Run Tests
run: |
python -m pytest -W error
env:
POSTGRES_PORT: ${{ job.services.postgres.ports[5432] }} # get randomly assigned published port