loader.json

{
  "callset_mapping_file": "/tmp/callset_pb.json",
  "vid_mapping_file": "/tmp/vid_pb.json",
  "workspace": "/tmp/ws",
  "vcf_output_format": "z",
  "num_parallel_vcf_file": 1,
  "reference_genome" : "GenomicsDB/tests/inputs/chr1_10MB.fasta.gz",
  "ignore_cells_not_in_partition": false,
  "num_cells_per_tile": 1000,
  "fail_if_updating": true,
  "compress_tiledb_array": true,
  "lb_callset_row_idx": 0,
  "segment_size": 1048576,
  "do_ping_pong_buffering": true,
  "treat_deletions_as_intervals": true,
  "produce_tiledb_array": true,
  "size_per_column_partition": 43581440,
  "discard_missing_gts": false,
  "offload_vcf_output_processing": true,
  "column_partitions": [
  {
   "begin": {
    "tiledb_column": 0
   },
   "array_name":"test0",
   "workspace": "/tmp/ws"
  }
  ],
  "vcf_header_filename": "GenomicsDB/tests/inputs/template_vcf_header.vcf",
  "row_based_partitioning": false,
  "disable_synced_writes": true,
  "produce_combined_vcf": false,
  "delete_and_create_tiledb_array": false,
  "discard_vcf_index": true

}