From b855c5d190bd2bda18f2651ab9f235b3afffc7aa Mon Sep 17 00:00:00 2001 From: James Stevenson Date: Thu, 25 Jan 2024 15:14:06 -0500 Subject: [PATCH] update TODO --- TODO.md | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/TODO.md b/TODO.md index 22f9752..b1e9dac 100644 --- a/TODO.md +++ b/TODO.md @@ -7,8 +7,6 @@ General: * Currently using VRS 2.0a-based libraries. For lifting back to VRS 1.3, some basic post-processing should be fine (annoying but shouldn't be too trivial) * Without access to a production DynamoDB instance, Gene Normalizer will be quickest and easiest to set up via a PostgreSQL data backend. That, however, requires an extra dependency group (noted in README). We might want to make a `pg` dependency group here or just include it in core dependencies. * On that note, I've only done minimal testing of how possible it would be to drop the gene normalizer dependency entirely, but it'd be nice to get there. -* Some of the singleton/factory stuff might be cleaner as `global`s -* make `silent` a global Alignment: * Pretty sure this is mostly done. @@ -19,7 +17,7 @@ Transcript selection: * Tests will need some extensive mocking (or cassettes?) for reliance on UTA and other external dependencies VRS mapping: -* In general, this stuff is still pretty rough. Tests aren't passing yet. +* In general, this stuff is still pretty rough. Not passing informal tests, and needs formal tests. * Finish double-checking the SeqRepo storage workaround * A fair amount of small questions about conditions written to handle specific scoresets/edge cases -* More testing. Can be ready for CI by manually patching the SequenceStore class (or using SeqRepoRESTDataProxy and cassettes). +* Can be ready for CI by manually patching the SequenceStore class (or using SeqRepoRESTDataProxy and cassettes).