From 93b4829d834269cfbbc86fb1eb53a29bb0659190 Mon Sep 17 00:00:00 2001
From: "Jonas Kellerer (TNG)" <jonas.kellerer@tngtech.com>
Date: Wed, 24 Jan 2024 17:50:39 +0100
Subject: [PATCH] fix: non default unaligned nucleotide sequence prefix

---
 src/silo/preprocessing/preprocessing_config_reader.cpp | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/silo/preprocessing/preprocessing_config_reader.cpp b/src/silo/preprocessing/preprocessing_config_reader.cpp
index 6228a37cf..04f9e65ef 100644
--- a/src/silo/preprocessing/preprocessing_config_reader.cpp
+++ b/src/silo/preprocessing/preprocessing_config_reader.cpp
@@ -33,6 +33,7 @@ struct convert<OptionalPreprocessingConfig> {
          extractStringIfPresent(node, "pangoLineageDefinitionFilename"),
          extractStringIfPresent(node, "referenceGenomeFilename"),
          extractStringIfPresent(node, "nucleotideSequencePrefix"),
+         extractStringIfPresent(node, "unalignedNucleotideSequencePrefix"),
          extractStringIfPresent(node, "genePrefix")
       };