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gcm_run_benchmark.j
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gcm_run_benchmark.j
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#!/bin/csh -f
#######################################################################
# Batch Parameters for Run Job
#######################################################################
#SBATCH --time=06:00:00
#SBATCH --nodes=@NODES
#SBATCH --tasks-per-node=@TASKS_PER_NODE
#SBATCH --job-name=@EXPID
#SBATCH --output=@BENCH_DIR/%x.o%j
#SBATCH --nice --no-requeue
#SBATCH @SYSTEM
#######################################################################
# System Settings
#######################################################################
umask 022
limit stacksize unlimited
#######################################################################
# Architecture Specific Environment Variables
#######################################################################
setenv ARCH `uname`
setenv SITE @SITE
setenv GEOSDIR @GEOSDIR
setenv GEOSBIN @GEOSBIN
setenv GEOSETC @GEOSETC
setenv GEOSUTIL @GEOSSRC
source $GEOSBIN/g5_modules
setenv @LD_LIBRARY_PATH_CMD ${LD_LIBRARY_PATH}:${GEOSDIR}/lib
# We only add BASEDIR to the @LD_LIBRARY_PATH_CMD if BASEDIR is defined (i.e., not running with Spack)
if ( $?BASEDIR ) then
setenv @LD_LIBRARY_PATH_CMD ${@LD_LIBRARY_PATH_CMD}:${BASEDIR}/${ARCH}/lib
endif
setenv RUN_CMD "@RUN_CMD"
setenv GCMVER `cat $GEOSETC/.AGCM_VERSION`
echo VERSION: $GCMVER
#######################################################################
# Experiment Specific Environment Variables
#######################################################################
setenv EXPID @EXPID
setenv EXPDIR @BENCH_DIR/@EXPID
setenv HOMDIR @BENCH_DIR/@EXPID
setenv RSTDATE @RSTDATE
setenv GCMEMIP @GCMEMIP
#######################################################################
# Create Experiment Sub-Directories
#######################################################################
if (! -e $EXPDIR/restarts ) mkdir -p $EXPDIR/restarts
if (! -e $EXPDIR/holding ) mkdir -p $EXPDIR/holding
if (! -e $EXPDIR/archive ) mkdir -p $EXPDIR/archive
if (! -e $EXPDIR/post ) mkdir -p $EXPDIR/post
if (! -e $EXPDIR/plot ) mkdir -p $EXPDIR/plot
if( $GCMEMIP == TRUE ) then
if (! -e $EXPDIR/restarts/$RSTDATE ) mkdir -p $EXPDIR/restarts/$RSTDATE
setenv SCRDIR $EXPDIR/scratch.$RSTDATE
else
setenv SCRDIR $EXPDIR/scratch
endif
set STATS_ONLY = @STATS_ONLY
if ($STATS_ONLY == 0) then
if (! -e $SCRDIR ) mkdir -p $SCRDIR
#######################################################################
# Set Experiment Run Parameters
#######################################################################
set NX = `grep '^\s*NX:' $HOMDIR/AGCM.rc | cut -d: -f2`
set NY = `grep '^\s*NY:' $HOMDIR/AGCM.rc | cut -d: -f2`
set AGCM_IM = `grep '^\s*AGCM_IM:' $HOMDIR/AGCM.rc | cut -d: -f2`
set AGCM_JM = `grep '^\s*AGCM_JM:' $HOMDIR/AGCM.rc | cut -d: -f2`
set AGCM_LM = `grep '^\s*AGCM_LM:' $HOMDIR/AGCM.rc | cut -d: -f2`
set OGCM_IM = `grep '^\s*OGCM\.IM_WORLD:' $HOMDIR/AGCM.rc | cut -d: -f2`
set OGCM_JM = `grep '^\s*OGCM\.JM_WORLD:' $HOMDIR/AGCM.rc | cut -d: -f2`
@COUPLED set OGCM_LM = `grep '^\s*OGCM\.LM:' $HOMDIR/AGCM.rc | cut -d: -f2`
@COUPLED set NX = `grep '^\s*OGCM\.NX:' $HOMDIR/AGCM.rc | cut -d: -f2`
@COUPLED set NY = `grep '^\s*OGCM\.NY:' $HOMDIR/AGCM.rc | cut -d: -f2`
# Calculate number of cores/nodes for IOSERVER
# --------------------------------------------
set USE_IOSERVER = @USE_IOSERVER
set AGCM_IOS_NODES = `grep '^\s*IOSERVER_NODES:' $HOMDIR/AGCM.rc | cut -d: -f2`
if ($USE_IOSERVER == 0) then
set IOS_NODES = 0
else
set IOS_NODES = $AGCM_IOS_NODES
endif
# Check for Over-Specification of CPU Resources
# ---------------------------------------------
if ($?SLURM_NTASKS) then
set NCPUS = $SLURM_NTASKS
else if ($?PBS_NODEFILE) then
set NCPUS = `cat $PBS_NODEFILE | wc -l`
else
set NCPUS = NULL
endif
@ MODEL_NPES = $NX * $NY
@ NCPUS_PER_NODE = @TASKS_PER_NODE
if ( $NCPUS != NULL ) then
if ( $USE_IOSERVER == 1 ) then
@ NODES = `echo "( ($MODEL_NPES + $NCPUS_PER_NODE) + ($AGCM_IOS_NODES * $NCPUS_PER_NODE) - 1)/$NCPUS_PER_NODE" | bc`
@ NPES = $NODES * $NCPUS_PER_NODE
if( $NPES > $NCPUS ) then
echo "CPU Resources are Over-Specified"
echo "--------------------------------"
echo "Allotted NCPUs: $NCPUS"
echo "Requested NCPUs: $NPES"
echo ""
echo "Specified NX: $NX"
echo "Specified NY: $NY"
echo ""
echo "Specified IOSERVER_NODES: $AGCM_IOS_NODES"
echo "Specified cores per node: $NCPUS_PER_NODE"
exit
endif
else
@ NPES = $MODEL_NPES
if( $NPES > $NCPUS ) then
echo "CPU Resources are Over-Specified"
echo "--------------------------------"
echo "Allotted NCPUs: $NCPUS"
echo "Requested NCPUs: $NPES"
echo ""
echo "Specified NX: $NX"
echo "Specified NY: $NY"
exit
endif
endif
else
# This is for the desktop path
@ NPES = $MODEL_NPES
endif
#######################################################################
# GCMEMIP Setup
#######################################################################
if( $GCMEMIP == TRUE & ! -e $EXPDIR/restarts/$RSTDATE/cap_restart ) then
cd $EXPDIR/restarts/$RSTDATE
cp $HOMDIR/CAP.rc CAP.rc.orig
awk '{$1=$1};1' < CAP.rc.orig > CAP.rc
set year = `echo $RSTDATE | cut -d_ -f1 | cut -b1-4`
set month = `echo $RSTDATE | cut -d_ -f1 | cut -b5-6`
>>>EMIP_OLDLAND<<<# Copy MERRA-2 Restarts
>>>EMIP_OLDLAND<<<# ---------------------
>>>EMIP_NEWLAND<<<# Copy Jason-3_4 REPLAY MERRA-2 NewLand Restarts
>>>EMIP_NEWLAND<<<# ----------------------------------------------
cp /discover/nobackup/projects/gmao/g6dev/ltakacs/@EMIP_MERRA2/restarts/AMIP/M${month}/restarts.${year}${month}.tar .
tar xf restarts.${year}${month}.tar
/bin/rm restarts.${year}${month}.tar
>>>EMIP_OLDLAND<<</bin/rm MERRA2*bin
>>>EMIP_OLDLAND<<<# Regrid MERRA-2 Restarts
>>>EMIP_OLDLAND<<<# -----------------------
>>>EMIP_NEWLAND<<<# Regrid Jason-3_4 REPLAY MERRA-2 NewLand Restarts
>>>EMIP_NEWLAND<<<# ------------------------------------------------
set RSTID = `/bin/ls *catch* | cut -d. -f1`
set day = `/bin/ls *catch* | cut -d. -f3 | awk 'match($0,/[0-9]{8}/) {print substr($0,RSTART+6,2)}'`
$GEOSBIN/regrid.pl -np -ymd ${year}${month}${day} -hr 21 -grout C${AGCM_IM} -levsout ${AGCM_LM} -outdir . -d . -expid $RSTID -tagin @EMIP_BCS_IN -oceanin e -i -nobkg -lbl -nolcv -tagout @LSMBCS -rs 3 -oceanout @OCEANOUT
>>>EMIP_OLDLAND<<</bin/rm $RSTID.*.bin
set IMC = $AGCM_IM
if( $IMC < 10 ) then
set IMC = 000$IMC
else if($IMC < 100) then
set IMC = 00$IMC
else if($IMC < 1000) then
set IMC = 0$IMC
endif
set chk_type = `/usr/bin/file -Lb --mime-type C${AGCM_IM}[cef]_${RSTID}.*catch*`
if( "$chk_type" =~ "application/octet-stream" ) set ext = bin
if( "$chk_type" =~ "application/x-hdf" ) set ext = nc4
$GEOSBIN/stripname C${AGCM_IM}@OCEANOUT_${RSTID}.
$GEOSBIN/stripname .${year}${month}${day}_21z.$ext.@LSMBCS_@BCSTAG.@ATMOStag_@OCEANtag
>>>EMIP_OLDLAND<<</bin/mv gocart_internal_rst gocart_internal_rst.merra2
>>>EMIP_OLDLAND<<<$GEOSBIN/gogo.x -s $RSTID.Chem_Registry.rc.${year}${month}${day}_21z -t $EXPDIR/RC/Chem_Registry.rc -i gocart_internal_rst.merra2 -o gocart_internal_rst -r C${AGCM_IM} -l ${AGCM_LM}
# Create CAP.rc and cap_restart
# -----------------------------
set nymd = ${year}${month}${day}
set nhms = 210000
echo $nymd $nhms > cap_restart
set curmonth = $month
@ count = 0
while( $count < 4 )
set date = `$GEOSBIN/tick $nymd $nhms 86400`
set nymd = $date[1]
set nhms = $date[2]
set year = `echo $nymd | cut -c1-4`
set month = `echo $nymd | cut -c5-6`
if( $curmonth != $month ) then
set curmonth = $month
@ count = $count + 1
endif
end
set oldstring = `grep '^\s*END_DATE:' CAP.rc`
set newstring = "END_DATE: ${year}${month}01 210000"
/bin/mv CAP.rc CAP.tmp
cat CAP.tmp | sed -e "s?$oldstring?$newstring?g" > CAP.rc
/bin/rm CAP.tmp
endif
#######################################################################
# Move to Scratch Directory and Copy RC Files from Home Directory
#######################################################################
cd $SCRDIR
/bin/rm -rf *
cp -f $EXPDIR/RC/* .
cp $EXPDIR/cap_restart .
cp -f $HOMDIR/*.rc .
cp -f $HOMDIR/*.nml .
cp -f $HOMDIR/*.yaml .
cp $GEOSBIN/bundleParser.py .
cat fvcore_layout.rc >> input.nml
@MOM6cp -f $HOMDIR/MOM_input .
@MOM6cp -f $HOMDIR/MOM_override .
if( $GCMEMIP == TRUE ) then
cp -f $EXPDIR/restarts/$RSTDATE/cap_restart .
cp -f $EXPDIR/restarts/$RSTDATE/CAP.rc .
endif
set END_DATE = `grep '^\s*END_DATE:' CAP.rc | cut -d: -f2`
set NUM_SGMT = `grep '^\s*NUM_SGMT:' CAP.rc | cut -d: -f2`
set FSEGMENT = `grep '^\s*FCST_SEGMENT:' CAP.rc | cut -d: -f2`
set USE_SHMEM = `grep '^\s*USE_SHMEM:' CAP.rc | cut -d: -f2`
#######################################################################
# Create HISTORY Collection Directories
#######################################################################
set collections = ''
foreach line ("`cat HISTORY.rc`")
set firstword = `echo $line | awk '{print $1}'`
set firstchar = `echo $firstword | cut -c1`
set secondword = `echo $line | awk '{print $2}'`
if ( $firstword == "::" ) goto done
if ( $firstchar != "#" ) then
set collection = `echo $firstword | sed -e "s/'//g"`
set collections = `echo $collections $collection`
if ( $secondword == :: ) goto done
endif
if ( $firstword == COLLECTIONS: ) then
set collections = `echo $secondword | sed -e "s/'//g"`
endif
end
done:
foreach collection ( $collections )
if (! -e $EXPDIR/$collection ) mkdir $EXPDIR/$collection
if (! -e $EXPDIR/holding/$collection ) mkdir $EXPDIR/holding/$collection
end
#######################################################################
# Link Boundary Datasets
#######################################################################
setenv BCSDIR @BCSDIR
@DATAOCEAN setenv SSTDIR @SSTDIR
setenv CHMDIR @CHMDIR
@DATAOCEAN setenv BCRSLV @ATMOStag_@OCEANtag
@COUPLED setenv BCRSLV @ATMOStag_DE0360xPE0180
setenv DATELINE DC
setenv EMISSIONS @EMISSIONS
@MOM5setenv ABCSDIR @COUPLEDIR/atmosphere_bcs/@LSMBCS/MOM5/@ATMOStag_@OCEANtag
@MOM5setenv OBCSDIR @shared_COUPLED/ocean/MOM5/${OGCM_IM}x${OGCM_JM}
@MOM6setenv ABCSDIR @COUPLEDIR/atmosphere_bcs/@LSMBCS/MOM6/@ATMOStag_@OCEANtag
@MOM6setenv OBCSDIR @shared_COUPLED/ocean/MOM6/${OGCM_IM}x${OGCM_JM}
@COUPLEDsetenv SSTDIR @COUPLEDIR/SST/MERRA2/${OGCM_IM}x${OGCM_JM}
@COUPLEDsetenv BCTAG `basename $ABCSDIR`
@DATAOCEANsetenv BCTAG `basename $BCSDIR`
set FILE = linkbcs
/bin/rm -f $FILE
cat << _EOF_ > $FILE
#!/bin/csh -f
@COUPLED /bin/mkdir -p RESTART
/bin/mkdir -p ExtData
/bin/ln -sf $CHMDIR/* ExtData
@COUPLED/bin/ln -sf $OBCSDIR/SEAWIFS_KPAR_mon_clim.${OGCM_IM}x${OGCM_JM} SEAWIFS_KPAR_mon_clim.data
@COUPLED/bin/ln -sf $ABCSDIR/@[email protected] tile.data
@COUPLED/bin/ln -sf $ABCSDIR/@[email protected] runoff.bin
@COUPLED/bin/ln -sf $OBCSDIR/MAPL_Tripolar.nc .
@COUPLED/bin/ln -sf $OBCSDIR/vgrid${OGCM_LM}.ascii ./vgrid.ascii
@MOM5#/bin/ln -s @COUPLEDIR/a@HIST_IMx@HIST_JM_o${OGCM_IM}x${OGCM_JM}/DC0@HIST_IMxPC0@[email protected] tile_hist.data
@MOM6#/bin/ln -s @COUPLEDIR/MOM6/DC0@HIST_IMxPC0@HIST_JM_@OCEANtag/DC0@HIST_IMxPC0@[email protected] tile_hist.data
# Precip correction
#/bin/ln -s /discover/nobackup/projects/gmao/share/gmao_ops/fvInput/merra_land/precip_CPCUexcludeAfrica-CMAP_corrected_MERRA/GEOSdas-2_1_4 ExtData/PCP
@DATAOCEAN /bin/ln -sf $BCSDIR/$BCRSLV/${BCRSLV}-Pfafstetter.til tile.data
@DATAOCEAN if( -e $BCSDIR/$BCRSLV/${BCRSLV}-Pfafstetter.TIL) then
@DATAOCEAN /bin/ln -sf $BCSDIR/$BCRSLV/${BCRSLV}-Pfafstetter.TIL tile.bin
@DATAOCEAN endif
# DAS or REPLAY Mode (AGCM.rc: pchem_clim_years = 1-Year Climatology)
# --------------------------------------------------------------------
@OPS_SPECIES/bin/ln -sf $BCSDIR/Shared/pchem.species.Clim_Prod_Loss.z_721x72.nc4 species.data
# CMIP-5 Ozone Data (AGCM.rc: pchem_clim_years = 228-Years)
# ----------------------------------------------------------
@CMIP_SPECIES/bin/ln -sf $BCSDIR/Shared/pchem.species.CMIP-5.1870-2097.z_91x72.nc4 species.data
# S2S pre-industrial with prod/loss of stratospheric water vapor
# (AGCM.rc: pchem_clim_years = 3-Years, and H2O_ProdLoss: 1 )
# --------------------------------------------------------------
#/bin/ln -sf $BCSDIR/Shared/pchem.species.CMIP-6.wH2OandPL.1850s.z_91x72.nc4 species.data
# MERRA-2 Ozone Data (AGCM.rc: pchem_clim_years = 39-Years)
# ----------------------------------------------------------
@MERRA2OX_SPECIES/bin/ln -sf $BCSDIR/Shared/pchem.species.CMIP-5.MERRA2OX.197902-201706.z_91x72.nc4 species.data
/bin/ln -sf $BCSDIR/Shared/*bin .
/bin/ln -sf $BCSDIR/Shared/*c2l*.nc4 .
@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/visdf_@RES_DATELINE.dat visdf.dat
@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/nirdf_@RES_DATELINE.dat nirdf.dat
@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/vegdyn_@RES_DATELINE.dat vegdyn.data
@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/lai_clim_@RES_DATELINE.data lai.data
@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/green_clim_@RES_DATELINE.data green.data
@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/ndvi_clim_@RES_DATELINE.data ndvi.data
@COUPLED/bin/ln -sf $ABCSDIR/visdf_@RES_DATELINE.dat visdf.dat
@COUPLED/bin/ln -sf $ABCSDIR/nirdf_@RES_DATELINE.dat nirdf.dat
@COUPLED/bin/ln -sf $ABCSDIR/vegdyn_@RES_DATELINE.dat vegdyn.data
@COUPLED/bin/ln -sf $ABCSDIR/lai_clim_@RES_DATELINE.data lai.data
@COUPLED/bin/ln -sf $ABCSDIR/green_clim_@RES_DATELINE.data green.data
@COUPLED/bin/ln -sf $ABCSDIR/ndvi_clim_@RES_DATELINE.data ndvi.data
>>>GCMRUN_CATCHCN<<<if ( -f $BCSDIR/$BCRSLV/lnfm_clim_@RES_DATELINE.data ) /bin/ln -sf $BCSDIR/$BCRSLV/lnfm_clim_@RES_DATELINE.data lnfm.data
>>>GCMRUN_CATCHCN<<</bin/ln -s $BCSDIR/land/shared/CO2_MonthlyMean_DiurnalCycle.nc4
#@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/topo_DYN_ave_@RES_DATELINE.data topo_dynave.data
#@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/topo_GWD_var_@RES_DATELINE.data topo_gwdvar.data
#@DATAOCEAN/bin/ln -sf $BCSDIR/$BCRSLV/topo_TRB_var_@RES_DATELINE.data topo_trbvar.data
@DATAOCEAN/bin/ln -sf /discover/nobackup/bmauer/gmted_topo/NCAR_TOPO_GMTED_UFS_SMOOTHING/c${AGCM_IM}/smoothed/gmted_DYN_ave_${AGCM_IM}x${AGCM_JM}.data topo_dynave.data
@DATAOCEAN/bin/ln -sf /discover/nobackup/bmauer/gmted_topo/NCAR_TOPO_GMTED_UFS_SMOOTHING/c${AGCM_IM}/smoothed/gmted_GWD_var_${AGCM_IM}x${AGCM_JM}.data topo_gwdvar.data
@DATAOCEAN/bin/ln -sf /discover/nobackup/bmauer/gmted_topo/NCAR_TOPO_GMTED_UFS_SMOOTHING/c${AGCM_IM}/smoothed/gmted_TRB_var_${AGCM_IM}x${AGCM_JM}.data topo_trbvar.data
@COUPLED/bin/ln -sf $ABCSDIR/topo_DYN_ave_@RES_DATELINE.data topo_dynave.data
@COUPLED/bin/ln -sf $ABCSDIR/topo_GWD_var_@RES_DATELINE.data topo_gwdvar.data
@COUPLED/bin/ln -sf $ABCSDIR/topo_TRB_var_@RES_DATELINE.data topo_trbvar.data
>>>FVCUBED<<<if( -e $BCSDIR/$BCRSLV/Gnomonic_$BCRSLV.dat ) then
>>>FVCUBED<<</bin/ln -sf $BCSDIR/$BCRSLV/Gnomonic_$BCRSLV.dat .
>>>FVCUBED<<<endif
@COUPLED cp $HOMDIR/*_table .
@COUPLED cp $OBCSDIR/INPUT/* INPUT
@COUPLED /bin/ln -sf $OBCSDIR/cice/kmt_cice.bin .
@COUPLED /bin/ln -sf $OBCSDIR/cice/grid_cice.bin .
_EOF_
>>>GCMRUN_CATCHCN<<<set LSM_CHOICE = `grep LSM_CHOICE: AGCM.rc | cut -d':' -f2`
>>>GCMRUN_CATCHCN<<<if ($LSM_CHOICE == 2) then
>>>GCMRUN_CATCHCN<<< grep -v "'CNFROOTC'" HISTORY.rc > Hist_tmp.rc && mv Hist_tmp.rc HISTORY.rc
>>>GCMRUN_CATCHCN<<<endif
@DATAOCEAN echo "/bin/ln -sf $SSTDIR"'/@SSTFILE sst.data' >> $FILE
@DATAOCEAN echo "/bin/ln -sf $SSTDIR"'/@ICEFILE fraci.data' >> $FILE
@DATAOCEAN echo "/bin/ln -sf $SSTDIR"'/@KPARFILE SEAWIFS_KPAR_mon_clim.data' >> $FILE
chmod +x linkbcs
cp linkbcs $EXPDIR
#######################################################################
# Get Executable and RESTARTS
#######################################################################
cp $EXPDIR/GEOSgcm.x .
set rst_files = `grep "RESTART_FILE" AGCM.rc | grep -v VEGDYN | grep -v "#" | cut -d ":" -f1 | cut -d "_" -f1-2`
set rst_file_names = `grep "RESTART_FILE" AGCM.rc | grep -v VEGDYN | grep -v "#" | cut -d ":" -f2`
set chk_files = `grep "CHECKPOINT_FILE" AGCM.rc | grep -v "#" | cut -d ":" -f1 | cut -d "_" -f1-2`
set chk_file_names = `grep "CHECKPOINT_FILE" AGCM.rc | grep -v "#" | cut -d ":" -f2`
set monthly_chk_names = `cat $EXPDIR/HISTORY.rc | grep -v '^[\t ]*#' | sed -n 's/\([^\t ]\+\).monthly:[\t ]*1.*/\1/p' | sed 's/$/_rst/' `
# Remove possible bootstrap parameters (+/-)
# ------------------------------------------
set dummy = `echo $rst_file_names`
set rst_file_names = ''
foreach rst ( $dummy )
set length = `echo $rst | awk '{print length($0)}'`
set bit = `echo $rst | cut -c1`
if( "$bit" == "+" | \
"$bit" == "-" ) set rst = `echo $rst | cut -c2-$length`
set rst_file_names = `echo $rst_file_names $rst`
end
# Copy Restarts to Scratch Directory
# ----------------------------------
if( $GCMEMIP == TRUE ) then
foreach rst ( $rst_file_names $monthly_chk_names )
if(-e $EXPDIR/restarts/$RSTDATE/$rst ) cp $EXPDIR/restarts/$RSTDATE/$rst . &
end
else
foreach rst ( $rst_file_names $monthly_chk_names )
if(-e $EXPDIR/$rst ) cp $EXPDIR/$rst . &
end
endif
wait
# Get proper ridge scheme GWD internal restart
# --------------------------------------------
/bin/rm gwd_internal_rst
/bin/cp @GWDRSDIR/gwd_internal_c${AGCM_IM} gwd_internal_rst
@COUPLED /bin/mkdir INPUT
@COUPLED cp $EXPDIR/RESTART/* INPUT
# Copy and Tar Initial Restarts to Restarts Directory
# ---------------------------------------------------
set edate = e`cat cap_restart | cut -c1-8`_`cat cap_restart | cut -c10-11`z
set numrs = `/bin/ls -1 ${EXPDIR}/restarts/*${edate}* | wc -l`
if($numrs == 0) then
foreach rst ( $rst_file_names )
if( -e $rst & ! -e ${EXPDIR}/restarts/$EXPID.${rst}.${edate}.${GCMVER}.${BCTAG}_${BCRSLV} ) then
cp $rst ${EXPDIR}/restarts/$EXPID.${rst}.${edate}.${GCMVER}.${BCTAG}_${BCRSLV} &
endif
end
wait
@COUPLED cp -r $EXPDIR/RESTART ${EXPDIR}/restarts/RESTART.${edate}
cd $EXPDIR/restarts
@DATAOCEAN tar cf restarts.${edate}.tar $EXPID.*.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}
@COUPLED tar cvf restarts.${edate}.tar $EXPID.*.${edate}.${GCMVER}.${BCTAG}_${BCRSLV} RESTART.${edate}
/bin/rm -rf `/bin/ls -d -1 $EXPID.*.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}`
@COUPLED /bin/rm -rf RESTART.${edate}
cd $SCRDIR
endif
# If any restart is binary, set NUM_READERS to 1 so that
# +-style bootstrapping of missing files can occur in
# MAPL. pbinary cannot do this, but pnc4 can.
# ------------------------------------------------------
set found_binary = 0
foreach rst ( $rst_file_names )
if (-e $rst) then
set rst_type = `/usr/bin/file -Lb --mime-type $rst`
if ( $rst_type =~ "application/octet-stream" ) then
set found_binary = 1
endif
endif
end
if ($found_binary == 1) then
/bin/mv AGCM.rc AGCM.tmp
cat AGCM.tmp | sed -e "/^NUM_READERS/ s/\([0-9]\+\)/1/g" > AGCM.rc
/bin/rm AGCM.tmp
endif
##################################################################
######
###### Perform multiple iterations of Model Run
######
##################################################################
@ counter = 1
while ( $counter <= ${NUM_SGMT} )
/bin/rm -f EGRESS
if( $GCMEMIP == TRUE ) then
cp -f $EXPDIR/restarts/$RSTDATE/CAP.rc .
else
cp -f $HOMDIR/CAP.rc .
endif
/bin/mv CAP.rc CAP.rc.orig
awk '{$1=$1};1' < CAP.rc.orig > CAP.rc
# Set Time Variables for Current_(c), Ending_(e), and Segment_(s) dates
# ---------------------------------------------------------------------
set nymdc = `awk '{print $1}' cap_restart`
set nhmsc = `awk '{print $2}' cap_restart`
set nymde = `grep '^\s*END_DATE:' CAP.rc | cut -d: -f2 | awk '{print $1}'`
set nhmse = `grep '^\s*END_DATE:' CAP.rc | cut -d: -f2 | awk '{print $2}'`
set nymds = `grep '^\s*JOB_SGMT:' CAP.rc | cut -d: -f2 | awk '{print $1}'`
set nhmss = `grep '^\s*JOB_SGMT:' CAP.rc | cut -d: -f2 | awk '{print $2}'`
# Compute Time Variables at the Finish_(f) of current segment
# -----------------------------------------------------------
set nyear = `echo $nymds | cut -c1-4`
set nmonth = `echo $nymds | cut -c5-6`
set nday = `echo $nymds | cut -c7-8`
set nhour = `echo $nhmss | cut -c1-2`
set nminute = `echo $nhmss | cut -c3-4`
set nsec = `echo $nhmss | cut -c5-6`
@ dt = $nsec + 60 * $nminute + 3600 * $nhour + 86400 * $nday
set nymdf = $nymdc
set nhmsf = $nhmsc
set date = `$GEOSBIN/tick $nymdf $nhmsf $dt`
set nymdf = $date[1]
set nhmsf = $date[2]
set year = `echo $nymdf | cut -c1-4`
set month = `echo $nymdf | cut -c5-6`
set day = `echo $nymdf | cut -c7-8`
@ month = $month + $nmonth
while( $month > 12 )
@ month = $month - 12
@ year = $year + 1
end
@ year = $year + $nyear
@ nymdf = $year * 10000 + $month * 100 + $day
if( $nymdf > $nymde ) set nymdf = $nymde
if( $nymdf == $nymde ) then
if( $nhmsf > $nhmse ) set nhmsf = $nhmse
endif
set yearc = `echo $nymdc | cut -c1-4`
set yearf = `echo $nymdf | cut -c1-4`
# For Non-Reynolds SST, Modify local CAP.rc Ending date if Finish time exceeds Current year boundary
# --------------------------------------------------------------------------------------------------
if( @OCEANtag != DE0360xPE0180 ) then
if( $yearf > $yearc ) then
#@ yearf = $yearc + 1
#@ nymdf = $yearf * 10000 + 0101
# set oldstring = `grep '^\s*END_DATE:' CAP.rc`
# set newstring = "END_DATE: $nymdf $nhmsf"
# /bin/mv CAP.rc CAP.tmp
# cat CAP.tmp | sed -e "s?$oldstring?$newstring?g" > CAP.rc
endif
endif
# Which ExtData are we using
set EXTDATA2G_TRUE = `grep -i '^\s*USE_EXTDATA2G:\s*\.TRUE\.' CAP.rc | wc -l`
# Select proper AMIP GOCART Emission RC Files
# -------------------------------------------
if( ${EMISSIONS} == AMIP_EMISSIONS ) then
if( $EXTDATA2G_TRUE == 0 ) then
set AMIP_Transition_Date = 20000301
# Before 2000-03-01, we need to use AMIP.20C which has different
# emissions (HFED instead of QFED) valid before 2000-03-01. Note
# that if you make a change to anything in $EXPDIR/RC/AMIP or
# $EXPDIR/RC/AMIP.20C, you might need to make a change in the other
# directory to be consistent. Some files in AMIP.20C are symlinks to
# that in AMIP but others are not.
if( $nymdc < ${AMIP_Transition_Date} ) then
set AMIP_EMISSIONS_DIRECTORY = $EXPDIR/RC/AMIP.20C
if( $nymdf > ${AMIP_Transition_Date} ) then
set nymdf = ${AMIP_Transition_Date}
set oldstring = `grep '^\s*END_DATE:' CAP.rc`
set newstring = "END_DATE: $nymdf $nhmsf"
/bin/mv CAP.rc CAP.tmp
cat CAP.tmp | sed -e "s?$oldstring?$newstring?g" > CAP.rc
endif
else
set AMIP_EMISSIONS_DIRECTORY = $EXPDIR/RC/AMIP
endif
else
set AMIP_EMISSIONS_DIRECTORY = $EXPDIR/RC/AMIP
endif
if( $AGCM_LM == 72 ) then
cp ${AMIP_EMISSIONS_DIRECTORY}/*.rc .
cp ${AMIP_EMISSIONS_DIRECTORY}/*.yaml .
else
set files = `/bin/ls -1 ${AMIP_EMISSIONS_DIRECTORY}/*.rc ${AMIP_EMISSIONS_DIRECTORY}/*.yaml`
foreach file ($files)
/bin/rm -f `basename $file`
/bin/rm -f dummy
cp $file dummy
cat dummy | sed -e "s|/L72/|/L${AGCM_LM}/|g" | sed -e "s|z72|z${AGCM_LM}|g" > `basename $file`
end
endif
endif
# Rename big ExtData files that are not needed
# --------------------------------------------
set SC_TRUE = `grep -i '^\s*ENABLE_STRATCHEM:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $SC_TRUE == 0 && -e StratChem_ExtData.rc ) /bin/mv StratChem_ExtData.rc StratChem_ExtData.rc.NOT_USED
set GMI_TRUE = `grep -i '^\s*ENABLE_GMICHEM:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $GMI_TRUE == 0 && -e GMI_ExtData.rc ) /bin/mv GMI_ExtData.rc GMI_ExtData.rc.NOT_USED
set GCC_TRUE = `grep -i '^\s*ENABLE_GEOSCHEM:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $GCC_TRUE == 0 && -e GEOSCHEMchem_ExtData.rc ) /bin/mv GEOSCHEMchem_ExtData.rc GEOSCHEMchem_ExtData.rc.NOT_USED
set CARMA_TRUE = `grep -i '^\s*ENABLE_CARMA:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $CARMA_TRUE == 0 && -e CARMAchem_GridComp_ExtData.rc ) /bin/mv CARMAchem_GridComp_ExtData.rc CARMAchem_GridComp_ExtData.rc.NOT_USED
set DNA_TRUE = `grep -i '^\s*ENABLE_DNA:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $DNA_TRUE == 0 && -e DNA_ExtData.rc ) /bin/mv DNA_ExtData.rc DNA_ExtData.rc.NOT_USED
set ACHEM_TRUE = `grep -i '^\s*ENABLE_ACHEM:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $ACHEM_TRUE == 0 && -e GEOSachem_ExtData.rc ) /bin/mv GEOSachem_ExtData.rc GEOSachem_ExtData.rc.NOT_USED
set GOCART_DATA_TRUE = `grep -i '^\s*ENABLE_GOCART_DATA:\s*\.TRUE\.' GEOS_ChemGridComp.rc | wc -l`
if ( $GOCART_DATA_TRUE == 0 && -e GOCARTdata_ExtData.rc ) /bin/mv GOCARTdata_ExtData.rc GOCARTdata_ExtData.rc.NOT_USED
@MP_TURN_OFF_WSUB_EXTDATA# 1MOM and GFDL microphysics do not use WSUB_CLIM
@MP_TURN_OFF_WSUB_EXTDATA# -------------------------------------------------
if ($EXTDATA2G_TRUE == 0 ) then
@MP_TURN_OFF_WSUB_EXTDATA/bin/mv WSUB_ExtData.rc WSUB_ExtData.tmp
@MP_TURN_OFF_WSUB_EXTDATAcat WSUB_ExtData.tmp | sed -e '/^WSUB_CLIM/ s#ExtData.*#/dev/null#' > WSUB_ExtData.rc
else
@MP_TURN_OFF_WSUB_EXTDATA/bin/mv WSUB_ExtData.yaml WSUB_ExtData.tmp
@MP_TURN_OFF_WSUB_EXTDATAcat WSUB_ExtData.tmp | sed -e '/collection:/ s#WSUB_SWclim.*#/dev/null#' > WSUB_ExtData.yaml
endif
@MP_TURN_OFF_WSUB_EXTDATA/bin/rm WSUB_ExtData.tmp
# Generate the complete ExtData.rc
# --------------------------------
if(-e ExtData.rc ) /bin/rm -f ExtData.rc
set extdata_files = `/bin/ls -1 *_ExtData.rc`
# Switch to MODIS v6.1 data after Nov 2021
if( $EXTDATA2G_TRUE == 0 ) then
set MODIS_Transition_Date = 20211101
if ( ${EMISSIONS} == OPS_EMISSIONS && ${MODIS_Transition_Date} <= $nymdc ) then
cat $extdata_files | sed 's|\(qfed2.emis_.*\).006.|\1.061.|g' > ExtData.rc
else
cat $extdata_files > ExtData.rc
endif
endif
if( $EXTDATA2G_TRUE == 1 ) then
$GEOSBIN/construct_extdata_yaml_list.py GEOS_ChemGridComp.rc
touch ExtData.rc
endif
# Move GOCART to use RRTMGP Bands
# -------------------------------
# UNCOMMENT THE LINES BELOW IF RUNNING RRTMGP
#
#set instance_files = `/bin/ls -1 *_instance*.rc`
#foreach instance ($instance_files)
# /bin/mv $instance $instance.tmp
# cat $instance.tmp | sed -e '/RRTMG/ s#RRTMG#RRTMGP#' > $instance
# /bin/rm $instance.tmp
#end
# Link Boundary Conditions for Appropriate Date
# ---------------------------------------------
setenv YEAR $yearc
./linkbcs
if (! -e tile.bin) then
$GEOSBIN/binarytile.x tile.data tile.bin
@MOM5 $GEOSBIN/binarytile.x tile_hist.data tile_hist.bin
endif
# If running in dual ocean mode, link sst and fraci data here
#set yy = `cat cap_restart | cut -c1-4`
#echo $yy
#ln -sf $SSTDIR/dataoceanfile_MERRA2_SST.${OGCM_IM}x${OGCM_JM}.${yy}.data sst.data
#ln -sf $SSTDIR/dataoceanfile_MERRA2_ICE.${OGCM_IM}x${OGCM_JM}.${yy}.data fraci.data
#######################################################################
# Split Saltwater Restart if detected
#######################################################################
if ( (-e $SCRDIR/openwater_internal_rst) && (-e $SCRDIR/seaicethermo_internal_rst)) then
echo "Saltwater internal state is already split, good to go!"
else
if ( ( ( -e $SCRDIR/saltwater_internal_rst ) || ( -e $EXPDIR/saltwater_internal_rst) ) && ( $counter == 1 ) ) then
echo "Found Saltwater internal state. Splitting..."
# If saltwater_internal_rst is in EXPDIR move to SCRDIR
# -----------------------------------------------------
if ( -e $EXPDIR/saltwater_internal_rst ) /bin/mv $EXPDIR/saltwater_internal_rst $SCRDIR
# The splitter script requires an OutData directory
# -------------------------------------------------
if (! -d OutData ) mkdir -p OutData
# Run the script
# --------------
$RUN_CMD 1 $GEOSBIN/SaltIntSplitter tile.data $SCRDIR/saltwater_internal_rst
# Move restarts
# -------------
/bin/mv OutData/openwater_internal_rst OutData/seaicethermo_internal_rst .
# Remove OutData
# --------------
/bin/rmdir OutData
# Make decorated copies for restarts tarball
# ------------------------------------------
cp openwater_internal_rst $EXPID.openwater_internal_rst.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}
cp seaicethermo_internal_rst $EXPID.seaicethermo_internal_rst.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}
# Inject decorated copies into restarts tarball
# ---------------------------------------------
tar rf $EXPDIR/restarts/restarts.${edate}.tar $EXPID.*.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}
# Remove the decorated restarts
# -----------------------------
/bin/rm $EXPID.*.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}
# Remove the saltwater internal restart
# -------------------------------------
/bin/rm $SCRDIR/saltwater_internal_rst
else
echo "Neither saltwater_internal_rst, nor openwater_internal_rst and seaicethermo_internal_rst were found. Abort!"
exit 6
endif
endif
# Test Openwater Restart for Number of tiles correctness
# ------------------------------------------------------
if ( -x $GEOSBIN/rs_numtiles.x ) then
set N_OPENW_TILES_EXPECTED = `grep '^\s*0' tile.data | wc -l`
set N_OPENW_TILES_FOUND = `$RUN_CMD 1 $GEOSBIN/rs_numtiles.x openwater_internal_rst | grep Total | awk '{print $NF}'`
if ( $N_OPENW_TILES_EXPECTED != $N_OPENW_TILES_FOUND ) then
echo "Error! Found $N_OPENW_TILES_FOUND tiles in openwater. Expect to find $N_OPENW_TILES_EXPECTED tiles."
echo "Your restarts are probably for a different ocean."
exit 7
endif
endif
# Check for MERRA2OX Consistency
# ------------------------------
# The MERRA2OX pchem file is only valid until 201706, so this is a first
# attempt at a check to make sure you aren't using it and are past the date
# Check for MERRA2OX by looking at AGCM.rc
set PCHEM_CLIM_YEARS = `awk '/pchem_clim_years/ {print $2}' AGCM.rc`
# If it is 39, we are using MERRA2OX
if ( $PCHEM_CLIM_YEARS == 39 ) then
# Grab the date from cap_restart
set YEARMON = `cat cap_restart | cut -c1-6`
# Set a magic date
set MERRA2OX_END_DATE = "201706"
# String comparison seems to work here...
if ( $YEARMON > $MERRA2OX_END_DATE ) then
echo "You seem to be using MERRA2OX pchem species file, but your simulation date [${YEARMON}] is after 201706. This file is only valid until this time."
exit 2
endif
endif
# Environment variables for MPI, etc
# ----------------------------------
@SETENVS
@GPUSTART
# Run bundleParser.py
#---------------------
python bundleParser.py
# If REPLAY, link necessary forcing files
# ---------------------------------------
set REPLAY_MODE = `grep '^\s*REPLAY_MODE:' AGCM.rc | cut -d: -f2`
if( $REPLAY_MODE == 'Exact' | $REPLAY_MODE == 'Regular' ) then
set ANA_EXPID = `grep '^\s*REPLAY_ANA_EXPID:' AGCM.rc | cut -d: -f2`
set ANA_LOCATION = `grep '^\s*REPLAY_ANA_LOCATION:' AGCM.rc | cut -d: -f2`
set REPLAY_FILE = `grep '^\s*REPLAY_FILE:' AGCM.rc | cut -d: -f2`
set REPLAY_FILE09 = `grep '^\s*REPLAY_FILE09:' AGCM.rc | cut -d: -f2`
set REPLAY_FILE_TYPE = `echo $REPLAY_FILE | cut -d"/" -f1 | grep -v %`
set REPLAY_FILE09_TYPE = `echo $REPLAY_FILE09 | cut -d"/" -f1 | grep -v %`
# Modify GAAS_GridComp.rc and Link REPLAY files
# ---------------------------------------------
/bin/mv -f GAAS_GridComp.rc GAAS_GridComp.tmp
cat GAAS_GridComp.tmp | sed -e "s?aod/Y%y4/M%m2/${ANA_EXPID}.?aod/Y%y4/M%m2/${ANA_EXPID}.?g" > GAAS_GridComp.rc
/bin/ln -sf ${ANA_LOCATION}/aod .
/bin/ln -sf ${ANA_LOCATION}/${REPLAY_FILE_TYPE} .
/bin/ln -sf ${ANA_LOCATION}/${REPLAY_FILE09_TYPE} .
endif
# Establish safe default number of OpenMP threads
# -----------------------------------------------
setenv OMP_NUM_THREADS 1
# Run GEOSgcm.x
# -------------
if( $USE_SHMEM == 1 ) $GEOSBIN/RmShmKeys_sshmpi.csh >& /dev/null
if( $USE_IOSERVER == 1 ) then
set IOSERVER_OPTIONS = "--npes_model $MODEL_NPES --nodes_output_server $IOS_NODES"
# Per SI Team, the multigroup server should always be used
# The ideal number of backend PEs is based on the number of HISTORY
# collections and number of IO nodes
# First we figure out the number of collections in the HISTORY.rc (this is not perfect, but is close to right)
set NUM_HIST_COLS = `cat HISTORY.rc | sed -n '/^COLLECTIONS:/,/^ *::$/{p;/^ *::$/q}' | grep -v '^ *#' | wc -l`
# Protect against divide by zero
if ($IOS_NODES == 0) then
echo "Something is wrong. IOSERVER asked for, but zero IO nodes provided"
exit 3
endif
# Now we divide that number of collections by the ioserver nodes
set NUM_BACKEND_PES = `echo "scale=6;(($NUM_HIST_COLS - 1) / $IOS_NODES)" | bc | awk '{print int($1 + 0.5)}'`
# Finally multigroup requires at least two backend pes
if ($NUM_BACKEND_PES < 2) set NUM_BACKEND_PES = 2
set IOSERVER_EXTRA = "--oserver_type multigroup --npes_backend_pernode $NUM_BACKEND_PES"
else
set IOSERVER_OPTIONS = ""
set IOSERVER_EXTRA = ""
endif
$RUN_CMD $NPES ./GEOSgcm.x $IOSERVER_OPTIONS $IOSERVER_EXTRA --logging_config 'logging.yaml'
if( $USE_SHMEM == 1 ) $GEOSBIN/RmShmKeys_sshmpi.csh >& /dev/null
@GPUEND
if( -e EGRESS ) then
set rc = 0
else
set rc = -1
endif
echo GEOSgcm Run Status: $rc
if ( $rc == -1 ) exit -1
endif # STATS_ONLY
if ($EXPID =~ '*RFCST*') then
echo Running Stats
foreach CLIM_SRC ('MERRA-2' 'ERA5')
cd $SCRDIR
set nDAYS = `cat CAP.rc | grep JOB_SGMT: | cut -d: -f2 | cut -c7-9`
@ nMAX = $nDAYS + 1
@ fHOURS = 24 * $nDAYS
@ nSECS = -60 * 60 * $fHOURS
set nymdc = `cat cap_restart | cut -c1-8`
set nhmsc = `cat cap_restart | cut -c10-15`
set dateV = `$GEOSBIN/tick $nymdc $nhmsc $nSECS`
set nymd = $dateV[1]
set yyyymm = `echo $nymd | cut -b1-6`
set FDAYS = `printf "%02d" $nDAYS`
set statsdir = $SCRDIR/GEOS-${CLIM_SRC}.stats.$yyyymm.f${FDAYS}day
mkdir -p $statsdir
cd $statsdir
set year0 = `echo $nymd | cut -b1-4`
set month0 = `echo $nymd | cut -b5-6`
set fcst_files = `/bin/ls -1 ../*geosgcm_prog*nc4`
# Set Climatology
# ------------
if ( "$CLIM_SRC" == 'ERA5' ) then
set clim_files = `/bin/ls -1 /discover/nobackup/projects/gmao/g6dev/sdrabenh/valdat/era5/clim_data/era5_mnth.mrg1_avg.1440x0721.Y1985-2014.T[01][0268]z.nc4`
set levs_clim = `echo 1000 975 950 925 900 875 850 825 800 775 750 700 650 600 550 500 450 400 350 300 250 225 200 175 150 125 100 70 50 30 20 10 7 5 3 2 1`
else
set clim_files = `/bin/ls -1 $SHARE/gmao_ops/verification/stats/MERRA-2.inst3_3d_asm_Np.198501_201412.clim_[01][0268]z.576x361.data.nc4`
set levs_clim = `echo 1000 975 950 925 900 850 800 750 700 600 500 400 300 250 200 150 100 70 50 30 10 7 5 3 1`
endif
set ana_files = ''
@ n = 1
while ($n <= $nMAX)
set year = `echo $nymd | cut -b1-4`
set month = `echo $nymd | cut -b5-6`
if ( "$CLIM_SRC" == 'ERA5' ) then
set next = `/bin/ls -1 /discover/nobackup/projects/gmao/g6dev/sdrabenh/valdat/era5/pres_levels_daily/Y$year/M$month/era5_pl-allvar.${nymd}*z.nc4`
else
set next = `/bin/ls -1 /discover/nobackup/projects/gmao/dadev/dao_it/archive/@X_EXPID/diag/Y${year}/M${month}/@X_EXPID.inst3_3d_asm_Np.${nymd}*.nc4`
endif
set ana_files = `echo $ana_files $next`
set date = `$GEOSUTIL/post/tick $nymd 0 86400`
set nymd = $date[1]
echo $n $date $nMAX
@ n = $n + 1
end
cat > stats_$CLIM_SRC.j << EOF
#!/bin/csh -f
#SBATCH --time=03:00:00
#SBATCH --nodes=1
#SBATCH --job-name=@EXPID
#SBATCH --output=${EXPDIR}_STATS_${CLIM_SRC}.o%j
#SBATCH --no-requeue
#SBATCH @SYSTEM
setenv GEOSDIR $GEOSDIR
setenv GEOSBIN $GEOSBIN
setenv GEOSETC $GEOSETC
setenv GEOSUTIL $GEOSUTIL
source $GEOSBIN/g5_modules
setenv @LD_LIBRARY_PATH_CMD ${LD_LIBRARY_PATH}:${BASEDIR}/${ARCH}/lib:${GEOSDIR}/lib
echo $@LD_LIBRARY_PATH_CMD
cd $statsdir
$RUN_CMD 1 $GEOSUTIL/bin/stats.x -fcst $fcst_files -ana $ana_files -cli $clim_files -rc $GEOSUTIL/post/stats.rc \
-levs $levs_clim -tag $EXPID -nfreq 060000 -fhour $fHOURS
exit 0
EOF
sbatch stats_$CLIM_SRC.j
cd $SCRDIR
end
endif
exit 0
#######################################################################
# Rename Final Checkpoints => Restarts for Next Segment and Archive
# Note: cap_restart contains the current NYMD and NHMS
#######################################################################
set edate = e`awk '{print $1}' cap_restart`_`awk '{print $2}' cap_restart | cut -c1-2`z
@COUPLED cp -r RESTART ${EXPDIR}/restarts/RESTART.${edate}
@COUPLED cp RESTART/* INPUT
# Move Intermediate Checkpoints to RESTARTS directory
# ---------------------------------------------------
set checkpoints = `/bin/ls -1 *_checkpoint.*`
if( $#checkpoints != 0 ) /bin/mv -f *_checkpoint.* ${EXPDIR}/restarts
# Rename Final Checkpoints for Archive
# ------------------------------------
set checkpoints = `/bin/ls -1 *_checkpoint`
foreach checkpoint ($checkpoints)
set chk_type = `/usr/bin/file -Lb --mime-type $checkpoint`
if ( $chk_type =~ "application/octet-stream" ) then
set ext = bin
else
set ext = nc4
endif
/bin/mv $checkpoint $EXPID.${checkpoint}.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}.$ext
$GEOSBIN/stripname _checkpoint _rst $EXPID.${checkpoint}.${edate}.${GCMVER}.${BCTAG}_${BCRSLV}.$ext