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EMA: mapping corner cases #170

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FrickTobias opened this issue Dec 4, 2019 · 1 comment
Closed

EMA: mapping corner cases #170

FrickTobias opened this issue Dec 4, 2019 · 1 comment

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@FrickTobias
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Some reads are being removed when mapped with EMA (those without barcode and those with N-base containing ones). They are very few, but they could be mapped separately with bwa and added to file, see discussion in #168.
pontushojer referenced this issue in AfshinLab/BLR Jun 3, 2021
@pontushojer
Enable mapping non barcodes reads for blr+10x
3f3e324
@pontushojer
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Fixed in AfshinLab/BLR@3f3e324

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@FrickTobias @pontushojer