From 974c871dbc0f7fe907f70a57aacb51a4f90a48f9 Mon Sep 17 00:00:00 2001
From: Michael Nuhn <mnuhn@ebi.ac.uk>
Date: Fri, 22 Jan 2016 13:31:03 +0000
Subject: [PATCH] Bugfix

---
 modules/Bio/EnsEMBL/Funcgen/Hive/MergeQCAlignments.pm | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/Bio/EnsEMBL/Funcgen/Hive/MergeQCAlignments.pm b/modules/Bio/EnsEMBL/Funcgen/Hive/MergeQCAlignments.pm
index 13479555c..30dc0b120 100644
--- a/modules/Bio/EnsEMBL/Funcgen/Hive/MergeQCAlignments.pm
+++ b/modules/Bio/EnsEMBL/Funcgen/Hive/MergeQCAlignments.pm
@@ -104,7 +104,7 @@ sub fetch_input {
   #could have recreated output_dir and merged_file_name from ResultSet and run_controls
   #as we did in MergeChunkResultSetFastqs, but passed for convenience
   my $gender = $rset->cell_type->gender;
-  $file_gender = 'female'
+  my $file_gender = 'female'
       if ($gender eq 'mixed');
   
   $self->sam_header($file_gender);