From 432c05606ffb4885d6120db6d4d39d7985630292 Mon Sep 17 00:00:00 2001 From: Ilias Lavidas Date: Fri, 20 Nov 2015 10:21:43 +0000 Subject: [PATCH] decrease analysis_capacity from 1000 -> 100 --- modules/Bio/EnsEMBL/Funcgen/Hive/Config/Collections.pm | 2 +- modules/Bio/EnsEMBL/Funcgen/Hive/Config/ReadAlignment.pm | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/Bio/EnsEMBL/Funcgen/Hive/Config/Collections.pm b/modules/Bio/EnsEMBL/Funcgen/Hive/Config/Collections.pm index f591c9e0e..50197b003 100644 --- a/modules/Bio/EnsEMBL/Funcgen/Hive/Config/Collections.pm +++ b/modules/Bio/EnsEMBL/Funcgen/Hive/Config/Collections.pm @@ -177,7 +177,7 @@ sub pipeline_analyses { -module => 'Bio::EnsEMBL::Funcgen::Hive::RunWiggleTools', -parameters => {mode => 'RPKM'}, #-input_ids => [ dataflowed from PreprocessAlignments via branch 2 ] - -analysis_capacity => 1000, + -analysis_capacity => 100, #Change this to hive_capacity as it may be competing with parallel peak jobs -rc_name => 'normal_30GB_2cpu', # This resource usage is a product of the read depth, so it could be detected in diff --git a/modules/Bio/EnsEMBL/Funcgen/Hive/Config/ReadAlignment.pm b/modules/Bio/EnsEMBL/Funcgen/Hive/Config/ReadAlignment.pm index 36554e5e5..7d7a013e1 100644 --- a/modules/Bio/EnsEMBL/Funcgen/Hive/Config/ReadAlignment.pm +++ b/modules/Bio/EnsEMBL/Funcgen/Hive/Config/ReadAlignment.pm @@ -332,13 +332,13 @@ sub pipeline_analyses { {-logic_name => 'Run_bwa_samse_control_chunk', -module => 'Bio::EnsEMBL::Funcgen::Hive::RunAligner', -batch_size => 1, #max parallelisation??? - -analysis_capacity => 1000, + -analysis_capacity => 100, -rc_name => 'normal_10gb'}, {-logic_name => 'Run_bwa_samse_merged_chunk', -module => 'Bio::EnsEMBL::Funcgen::Hive::RunAligner', -batch_size => 1, #max parallelisation??? - -analysis_capacity => 1000, + -analysis_capacity => 100, -rc_name => 'normal_10gb'}, {-logic_name => 'Run_bwa_samse_replicate_chunk', @@ -346,7 +346,7 @@ sub pipeline_analyses { # These jobs can be run in parallell... don't put too many since it may generate many jobs...jobs! #-limit => 1,#what is this? -batch_size => 1, #max parallelisation? Although probably want to up this so we don't hit pending time - -analysis_capacity => 1000, + -analysis_capacity => 100, -rc_name => 'normal_10gb'},