forked from scverse/squidpy
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path.pre-commit-config.yaml
127 lines (127 loc) · 4.06 KB
/
.pre-commit-config.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
fail_fast: false
default_language_version:
python: python3
default_stages:
- commit
- push
minimum_pre_commit_version: 2.9.3
repos:
- repo: https://github.com/pre-commit/mirrors-mypy
rev: v0.942
hooks:
- id: mypy
additional_dependencies:
[numpy==1.21.0, scipy, pandas, types-requests]
exclude: .scripts/ci/download_data.py|squidpy/datasets/_(dataset|image).py # See https://github.com/pre-commit/mirrors-mypy/issues/33
- repo: https://github.com/psf/black
rev: 22.3.0
hooks:
- id: black
additional_dependencies: [toml]
- repo: https://github.com/pre-commit/mirrors-prettier
rev: v2.5.1
hooks:
- id: prettier
- repo: https://github.com/timothycrosley/isort
rev: 5.10.1
hooks:
- id: isort
additional_dependencies: [toml]
args: [--order-by-type]
- repo: https://github.com/asottile/yesqa
rev: v1.3.0
hooks:
- id: yesqa
additional_dependencies:
[
flake8-tidy-imports,
flake8-docstrings,
flake8-rst-docstrings,
flake8-comprehensions,
flake8-bugbear,
flake8-blind-except,
flake8-builtins,
flake8-pytest-style,
flake8-mock,
flake8-string-format,
]
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.1.0
hooks:
- id: detect-private-key
- id: check-merge-conflict
- id: check-ast
- id: check-symlinks
- id: check-added-large-files
- id: check-executables-have-shebangs
- id: fix-encoding-pragma
args: [--remove]
- id: end-of-file-fixer
- id: mixed-line-ending
args: [--fix=lf]
- id: trailing-whitespace
exclude: ^.bumpversion.cfg$
- id: name-tests-test
args: [--django]
- id: check-case-conflict
- id: check-docstring-first
- id: check-yaml
- id: check-toml
- id: requirements-txt-fixer
- repo: https://github.com/myint/autoflake
rev: v1.4
hooks:
- id: autoflake
args:
[
--in-place,
--remove-all-unused-imports,
--remove-unused-variable,
--ignore-init-module-imports,
]
- repo: https://github.com/pycqa/flake8.git
rev: 4.0.1
hooks:
- id: flake8
additional_dependencies:
[
flake8-tidy-imports,
flake8-docstrings,
flake8-rst-docstrings,
flake8-comprehensions,
flake8-bugbear,
flake8-blind-except,
flake8-builtins,
flake8-pytest-style,
flake8-mock,
flake8-string-format,
]
- repo: https://github.com/jumanjihouse/pre-commit-hooks
rev: 2.1.6
hooks:
- id: script-must-have-extension
name: Check executable files use .sh extension
types: [shell, executable]
- repo: https://github.com/asottile/blacken-docs
rev: v1.12.1
hooks:
- id: blacken-docs
additional_dependencies: [black==20.8b1]
- repo: https://github.com/asottile/pyupgrade
rev: v2.31.1
hooks:
- id: pyupgrade
args: [--py3-plus, --py38-plus, --keep-runtime-typing]
- repo: https://github.com/pre-commit/pygrep-hooks
rev: v1.9.0
hooks:
- id: python-no-eval
- id: python-use-type-annotations
- id: python-check-blanket-noqa
- id: rst-backticks
- id: rst-directive-colons
- id: rst-inline-touching-normal
- repo: https://github.com/PyCQA/doc8
rev: 0.11.1
hooks:
- id: doc8