action.yml

---
name: Build
on:
  push:
    branches: [master]
jobs:
  build:
    name: Compile Code
    runs-on: ${{ matrix.os }}
    if: "!contains(github.event.head_commit.message, 'noci')"
    strategy:
      matrix:
        # os: [ubuntu-latest]
        # os: [macOS-latest]
        os: [ubuntu-latest, macOS-latest]
        # os: [ubuntu-latest, macOS-latest, windows-latest]
        # python-version: [3.6, 3.7]
        # python-version: [3.6, 3.7]
        python-version: [3.7]
        cflag-options:
          - ' -DENABLE_GEOFLOW=ON  -DENABLE_BEM=ON  -DGET_MSMS=ON  -DENABLE_FETK=ON  -DENABLE_PBSAM=ON  -DENABLE_PBAM=ON  -DENABLE_PYTHON=ON  -DBUILD_SHARED_LIBS=ON  -DBUILD_DOC=OFF'
          # - ' -DENABLE_GEOFLOW=ON  -DENABLE_BEM=ON  -DGET_MSMS=ON  -DENABLE_FETK=ON  -DENABLE_PBSAM=ON  -DENABLE_PBAM=ON  -DENABLE_PYTHON=ON  -DBUILD_SHARED_LIBS=OFF -DBUILD_DOC=OFF'
          # - ' -DENABLE_GEOFLOW=ON  -DENABLE_BEM=ON  -DGET_MSMS=ON  -DENABLE_FETK=ON  -DENABLE_PBSAM=OFF -DENABLE_PBAM=OFF -DENABLE_PYTHON=ON  -DBUILD_SHARED_LIBS=ON  -DCMAKE_C_FLAGS="-fPIC" -DBUILD_DOC=OFF'
          # - ' -DENABLE_GEOFLOW=ON  -DENABLE_BEM=OFF -DGET_MSMS=OFF -DENABLE_FETK=ON  -DENABLE_PBSAM=OFF -DENABLE_PBAM=OFF -DENABLE_PYTHON=ON  -DBUILD_SHARED_LIBS=ON  -DCMAKE_C_FLAGS="-fPIC" -DBUILD_DOC=OFF'
    steps:
      - uses: actions/checkout@v1
      - name: Set up Python
        uses: actions/setup-python@v1
        with:
          python-version: ${{ matrix.python-version }}
      - name: Prereqs
        uses: mstksg/get-package@v1
        with:
          brew: gcc@7 bison flex swig readline
          apt-get: bison flex swig libreadline-dev
      - name: Build and Install
        run: |
          echo "==================================== WHERE AM I ==================================== "
          pwd
          # Make the install directory
          mkdir -p $HOME/local

          echo "==================================== VERSIONS: ==================================== "
          echo "==================================== PYTHON VERSION"
          python -c "import sys; print(sys.version)"
          echo "==================================== CMAKE VERSION"
          cmake --version
          echo "==================================== Gcc VERSION"
          gcc --version
          echo "==================================== G++ VERSION"
          g++ --version
          echo "==================================== SWIG VERSION"
          swig -version

          echo "==================================== Install Python requirements ==================================== "
          pip3 install -U pip
          pip3 install -U pytest
          pip3 install -U virtualenv
          pip3 install -U numpy

          #  Just build APBS for now
          echo "==================================== PWD FOR TOP DIR ==================================== "
          pwd

          echo "==================================== Get External SubModules ==================================== "
          git submodule init
          git submodule update
          #mkdir build
          #cd build
          #cmake ..
          #make VERBOSE=1
          #cd ..

          cd apbs
          echo "==================================== PWD FOR APBS SRC ==================================== "
          pwd
          mkdir build
          cd build
          echo "==================================== BUILD DIR ==================================== "
          pwd

          echo "==================================== RUN CMAKE ==================================== "
          pwd
          cmake ${{ matrix.cflag-options }} -DCMAKE_INSTALL_PREFIX:PATH=$HOME/local .. || exit 1

          echo "==================================== RUN MAKE ==================================== "
          pwd
          VERBOSE=1 make -j 1
          VERBOSE=1 make -j 1 install
      - name: Run the tests
        run: |
          #  Assume we are in the User's home directory where the top of the repository
          echo "==================================== LOOK for APBS binary ==================================== "
          #pwd
          #echo find $HOME -type f -name apbs
          #find $HOME -type f -name apbs
          echo find $HOME -type f -name libmaloc
          find $HOME -type f -name libmaloc\*
          echo find $HOME -type f -name libTABIPB
          find $HOME -type f -name libTABIPB\*
          echo cd apbs/tests
          cd apbs/tests
          echo pwd
          pwd
          echo ls
          ls
          if [ -f /etc/os-release ]; then
            ldd $HOME/local/bin/apbs
          fi
          #  TODO: Total HACK since it should be using STATIC libraries
          #export LD_LIBRARY_PATH="/home/runner/work/apbs-pdb2pqr/apbs-pdb2pqr/apbs/build/fetk/lib"
          #export LD_LIBRARY_PATH=${HOME}/local/lib:$LD_LIBRARY_PATH
          for name in `echo $TEST_LIST`
          do
            echo bash run_travis_test.sh $HOME/local/bin $name
            bash run_travis_test.sh $HOME/local/bin $name
          done
        env:
          TEST_LIST: 'born geoflow actin-dimer-auto actin-dimer-parallel alkanes FKBP hca-bind ion-pmf ion-protein ionize pka-lig point-pmf solv protein-rna'
          # https://codecov.io/gh/Electrostatics/apbs-pdb2pqr
          CODECOV_TOKEN: "e3a1e24c-5598-4f47-9353-7fa0ac57f98e"