cmorize_obs is broken

[bascrezee]

My guess would be that it is related to the recent change to using fire. 🔥

$ cmorize_obs -c config-ETH-LANDCLIM.yml -o MERRA2

Traceback (most recent call last):
  File "/net/exo/landclim/crezees/conda/envs/esmvaltool-public/bin/cmorize_obs", line 11, in <module>
    load_entry_point('ESMValTool', 'console_scripts', 'cmorize_obs')()
  File "/home/crezees/ESMValTool/esmvaltool/cmorizers/obs/cmorize_obs.py", line 166, in main
    config_user = read_config_user_file(config_file, 'cmorize_obs')
TypeError: read_config_user_file() missing 1 required positional argument: 'options'

[mattiarighi]

See ESMValGroup/ESMValCore#709

[bascrezee]

Thanks. Good to have a branch where it is working for now.

[mattiarighi]

Plan to merge it soon.

[bascrezee]

Thanks. So how am I supposed to run it now? I don't get cmorize_obs working yet with the following commands:

cmorize_obs -c config-ETH-LANDCLIM.yml -o CDS-SATELLITE-SOIL-MOISTURE

cmorize_obs -o CDS-SATELLITE-SOIL-MOISTURE

[mattiarighi]

--config_file instead of -c should do it.

[bascrezee]

Hmmm, not yet.

$   cmorize_obs --config-file config-ETH-LANDCLIM.yml -o CDS-SATELLITE-SOIL-MOISTURE

Traceback (most recent call last):
  File "/conda/envs/esmvaltool-public/bin/cmorize_obs", line 11, in <module>
    load_entry_point('ESMValTool', 'console_scripts', 'cmorize_obs')()
  File "/ESMValTool/esmvaltool/cmorizers/obs/cmorize_obs.py", line 175, in main
    output=run_dir, console_log_level=config_user['log_level'])
TypeError: configure_logging() got an unexpected keyword argument 'output'

[mattiarighi]

Please report on ESMValGroup/ESMValCore#709

[mattiarighi]

Fixed by #1721