From e50677cf0b7a77557df6800b931a2df0b06be4c4 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Thu, 22 Aug 2024 18:45:35 +0000 Subject: [PATCH] deploy: c5fd700b039589c152b9912f700385494ffab625 --- .../html/CIME_api/CIME.SystemTests.html | 70 +- .../update-mvk-config/html/CIME_api/CIME.html | 39 +- .../html/CIME_api/CIME.tests.html | 96 +- .../html/CIME_api/modules.html | 4 +- .../html/_modules/CIME/SystemTests/mvk.html | 517 ++++++++++ .../tests/test_unit_system_tests_mvk.html | 928 ++++++++++++++++++ .../html/_modules/index.html | 2 + branch/update-mvk-config/html/genindex.html | 80 +- branch/update-mvk-config/html/objects.inv | Bin 17795 -> 18029 bytes .../update-mvk-config/html/py-modindex.html | 10 + branch/update-mvk-config/html/searchindex.js | 2 +- 11 files changed, 1733 insertions(+), 15 deletions(-) create mode 100644 branch/update-mvk-config/html/_modules/CIME/SystemTests/mvk.html create mode 100644 branch/update-mvk-config/html/_modules/CIME/tests/test_unit_system_tests_mvk.html diff --git a/branch/update-mvk-config/html/CIME_api/CIME.SystemTests.html b/branch/update-mvk-config/html/CIME_api/CIME.SystemTests.html index 9f23e69c3ba..c99a09921f9 100644 --- a/branch/update-mvk-config/html/CIME_api/CIME.SystemTests.html +++ b/branch/update-mvk-config/html/CIME_api/CIME.SystemTests.html @@ -478,8 +478,74 @@

Submodules -

CIME.SystemTests.mvk module

+
+

CIME.SystemTests.mvk module

+

Multivariate test for climate reproducibility using the Kolmogrov-Smirnov (K-S) +test and based on The CESM/E3SM model’s multi-instance capability is used to +conduct an ensemble of simulations starting from different initial conditions.

+

This class inherits from SystemTestsCommon.

+
+
+class CIME.SystemTests.mvk.MVK(case, **kwargs)[source]
+

Bases: SystemTestsCommon

+
+
+build_phase(sharedlib_only=False, model_only=False)[source]
+

This is the default build phase implementation, it just does an individual build. +This is the subclass’ extension point if they need to define a custom build +phase.

+

PLEASE THROW EXCEPTION ON FAIL

+
+ +
+
+process_evv_output(evv_out_dir)[source]
+
+ +
+
+update_testlog(test_name, case_name, evv_out_dir)[source]
+
+ +
+ +
+
+class CIME.SystemTests.mvk.MVKConfig[source]
+

Bases: ConfigBase

+
+
+evv_test_config(case, config)[source]
+

Customize the evv4esm configuration.

+

This method is used to customize the default evv4esm configuration +or generate a completely new one.

+

The return configuration will be written to $RUNDIR/$CASE.json.

+
+
Args:

case (CIME.case.case.Case): The case instance. +config (dict): Default evv4esm configuration.

+
+
Returns:

dict: Dictionary with test configuration.

+
+
+
+ +
+
+generate_namelist(case, component, i, filename)[source]
+

Generate per instance namelist.

+

This method is called for each instance to generate the desired +modifications.

+
+
Args:

case (CIME.case.case.Case): The case instance. +component (str): Component the namelist belongs to. +i (int): Instance unique number. +filename (str): Name of the namelist that needs to be created.

+
+
+
+ +
+

CIME.SystemTests.nck module

diff --git a/branch/update-mvk-config/html/CIME_api/CIME.html b/branch/update-mvk-config/html/CIME_api/CIME.html index 9ea75777e7e..a7d9fdff35e 100644 --- a/branch/update-mvk-config/html/CIME_api/CIME.html +++ b/branch/update-mvk-config/html/CIME_api/CIME.html @@ -610,7 +610,20 @@

SubpackagesMCC -
  • CIME.SystemTests.mvk module
    • +
  • CIME.SystemTests.mvk module +
  • CIME.SystemTests.nck module @@ -2110,7 +2123,29 @@

    Subpackagescreate_mock_case()

    • -
  • CIME.tests.test_unit_system_tests_mvk module
    • +
  • CIME.tests.test_unit_system_tests_mvk module +
  • CIME.tests.test_unit_test_status module
    • TestTestStatus
      • TestTestStatus.setUp()
        • diff --git a/branch/update-mvk-config/html/CIME_api/CIME.tests.html b/branch/update-mvk-config/html/CIME_api/CIME.tests.html index 7e1406d8e15..067adeb112c 100644 --- a/branch/update-mvk-config/html/CIME_api/CIME.tests.html +++ b/branch/update-mvk-config/html/CIME_api/CIME.tests.html @@ -2783,8 +2783,100 @@

        Submodules -

        CIME.tests.test_unit_system_tests_mvk module

        +
        +

        CIME.tests.test_unit_system_tests_mvk module

        +
        +
        +class CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK(methodName='runTest')[source]
        +

        Bases: TestCase

        +
        +
        +tearDown()[source]
        +

        Hook method for deconstructing the test fixture after testing it.

        +
        + +
        +
        +test__compare_baseline(evv, append_testlog)[source]
        +
        + +
        +
        +test__compare_baseline_resubmit(evv, append_testlog)[source]
        +
        + +
        +
        +test__generate_baseline(evv, append_testlog, _generate_baseline)[source]
        +
        + +
        +
        +test_build_phase(build_indv, case_setup)[source]
        +
        + +
        +
        +test_compare_baseline()[source]
        +
        + +
        +
        +test_generate_namelist()[source]
        +
        + +
        +
        +test_generate_namelist_multiple_components()[source]
        +
        + +
        +
        +test_mvk()[source]
        +
        + +
        +
        +test_testmod_complex(evv, find_test_mods)[source]
        +
        + +
        +
        +test_testmod_simple(evv, find_test_mods)[source]
        +
        + +
        +
        +test_update_testlog(machines, append_testlog)[source]
        +
        + +
        +
        +test_update_testlog_htmlroot(machines, append_testlog, get_htmlroot)[source]
        +
        + +
        +
        +test_update_testlog_urlroot_None(machines, append_testlog, get_urlroot)[source]
        +
        + +
        + +
        +
        +CIME.tests.test_unit_system_tests_mvk.create_complex_case(case_name, temp_dir, run_dir, baseline_dir, compare_baseline=False, mock_evv_output=False)[source]
        +
        + +
        +
        +CIME.tests.test_unit_system_tests_mvk.create_simple_case(model='e3sm', resubmit=0, generate_baseline=False)[source]
        +
        + +
        +
        +CIME.tests.test_unit_system_tests_mvk.write_evv_output(evv_output_path, mock_evv_output)[source]
        +
        +

        CIME.tests.test_unit_test_status module

        diff --git a/branch/update-mvk-config/html/CIME_api/modules.html b/branch/update-mvk-config/html/CIME_api/modules.html index 8278e93302f..87a1064ab68 100644 --- a/branch/update-mvk-config/html/CIME_api/modules.html +++ b/branch/update-mvk-config/html/CIME_api/modules.html @@ -135,7 +135,7 @@

        CIME<
      • CIME.SystemTests.irt module
      • CIME.SystemTests.ldsta module
      • CIME.SystemTests.mcc module
        • -
      • CIME.SystemTests.mvk module
        • +
      • CIME.SystemTests.mvk module
      • CIME.SystemTests.nck module
      • CIME.SystemTests.ncr module
      • CIME.SystemTests.nodefail module
        • @@ -287,7 +287,7 @@

        CIME<
      • CIME.tests.test_unit_nmlgen module
      • CIME.tests.test_unit_paramgen module
      • CIME.tests.test_unit_system_tests module
        • -
      • CIME.tests.test_unit_system_tests_mvk module
        • +
      • CIME.tests.test_unit_system_tests_mvk module
      • CIME.tests.test_unit_test_status module
      • CIME.tests.test_unit_two_link_to_case2_output module
      • CIME.tests.test_unit_user_mod_support module
        • diff --git a/branch/update-mvk-config/html/_modules/CIME/SystemTests/mvk.html b/branch/update-mvk-config/html/_modules/CIME/SystemTests/mvk.html new file mode 100644 index 00000000000..8e7606a4ced --- /dev/null +++ b/branch/update-mvk-config/html/_modules/CIME/SystemTests/mvk.html @@ -0,0 +1,517 @@ + + + + + + CIME.SystemTests.mvk — CIME master documentation + + + + + + + + + + + + + + + + + + + + + +
        + + +
        + +
        +
        +
        + +
        +
        +
        +
        + +

        Source code for CIME.SystemTests.mvk

        +"""
+Multivariate test for climate reproducibility using the Kolmogrov-Smirnov (K-S)
+test and based on The CESM/E3SM model's multi-instance capability is used to
+conduct an ensemble of simulations starting from different initial conditions.
+
+This class inherits from SystemTestsCommon.
+"""
+
+import os
+import json
+import logging
+from shutil import copytree
+
+from CIME import test_status
+from CIME import utils
+from CIME.SystemTests.system_tests_common import SystemTestsCommon
+from CIME.case.case_setup import case_setup
+from CIME.XML.machines import Machines
+from CIME.config import ConfigBase
+from CIME.SystemTests import test_mods
+from CIME.namelist import Namelist
+
+import evv4esm  # pylint: disable=import-error
+from evv4esm.__main__ import main as evv  # pylint: disable=import-error
+
+version = evv4esm.__version_info__
+
+assert version >= (0, 5, 0), "Please install evv4esm greater or equal to 0.5.0"
+
+EVV_LIB_DIR = os.path.abspath(os.path.dirname(evv4esm.__file__))
+
+logger = logging.getLogger(__name__)
+
+
+
        
+[docs]
+class MVKConfig(ConfigBase):
+    def __init__(self):
+        super().__init__()
+
+        if self.loaded:
+            return
+
+        self._set_attribute("component", "", "The main component.")
+        self._set_attribute(
+            "components", [], "Components that require namelist customization."
+        )
+        self._set_attribute("ninst", 30, "The number of instances.")
+        self._set_attribute(
+            "var_set", "default", "Name of the variable set to analyze."
+        )
+        self._set_attribute("ref_case", "Baseline", "Name of the reference case.")
+        self._set_attribute("test_case", "Test", "Name of the test case.")
+
+
        
+[docs]
+    def generate_namelist(
+        self, case, component, i, filename
+    ):  # pylint: disable=unused-argument
+        """Generate per instance namelist.
+
+        This method is called for each instance to generate the desired
+        modifications.
+
+        Args:
+            case (CIME.case.case.Case): The case instance.
+            component (str): Component the namelist belongs to.
+            i (int): Instance unique number.
+            filename (str): Name of the namelist that needs to be created.
+        """
+        namelist = Namelist()
+
+        with namelist(filename) as nml:
+            nml.set_variable_value("", "new_random", True)
+            nml.set_variable_value("", "pertlim", "1.0e-10")
+            nml.set_variable_value("", "seed_custom", f"{i}")
+            nml.set_variable_value("", "seed_clock", True)
        
+
+
+
        
+[docs]
+    def evv_test_config(self, case, config):  # pylint: disable=unused-argument
+        """Customize the evv4esm configuration.
+
+        This method is used to customize the default evv4esm configuration
+        or generate a completely new one.
+
+        The return configuration will be written to `$RUNDIR/$CASE.json`.
+
+        Args:
+            case (CIME.case.case.Case): The case instance.
+            config (dict): Default evv4esm configuration.
+
+        Returns:
+            dict: Dictionary with test configuration.
+        """
+        return config
        
+
+
+    def _default_evv_test_config(self, run_dir, base_dir, evv_lib_dir):
+        config = {
+            "module": os.path.join(evv_lib_dir, "extensions", "ks.py"),
+            "test-case": self.test_case,
+            "test-dir": run_dir,
+            "ref-case": self.ref_case,
+            "ref-dir": base_dir,
+            "var-set": self.var_set,
+            "ninst": self.ninst,
+            "component": self.component,
+        }
+
+        return config
        
+
+
+
+
        
+[docs]
+class MVK(SystemTestsCommon):
+    def __init__(self, case, **kwargs):
+        """
+        initialize an object interface to the MVK test
+        """
+        self._config = None
+
+        SystemTestsCommon.__init__(self, case, **kwargs)
+
+        *_, case_test_mods = utils.parse_test_name(self._casebaseid)
+
+        test_mods_paths = test_mods.find_test_mods(
+            case.get_value("COMP_INTERFACE"), case_test_mods
+        )
+
+        for test_mods_path in test_mods_paths:
+            self._config = MVKConfig.load(os.path.join(test_mods_path, "params.py"))
+
+        if self._config is None:
+            self._config = MVKConfig()
+
+        # Use old behavior for component
+        if self._config.component == "":
+            # TODO remove model specific
+            if self._case.get_value("MODEL") == "e3sm":
+                self._config.component = "eam"
+            else:
+                self._config.component = "cam"
+
+        if len(self._config.components) == 0:
+            self._config.components = [self._config.component]
+        elif (
+            self._config.component != ""
+            and self._config.component not in self._config.components
+        ):
+            self._config.components.extend([self._config.component])
+
+        if (
+            self._case.get_value("RESUBMIT") == 0
+            and self._case.get_value("GENERATE_BASELINE") is False
+        ):
+            self._case.set_value("COMPARE_BASELINE", True)
+        else:
+            self._case.set_value("COMPARE_BASELINE", False)
+
+
        
+[docs]
+    def build_phase(self, sharedlib_only=False, model_only=False):
+        # Only want this to happen once. It will impact the sharedlib build
+        # so it has to happen there.
+        if not model_only:
+            logging.warning("Starting to build multi-instance exe")
+
+            for comp in self._case.get_values("COMP_CLASSES"):
+                self._case.set_value("NTHRDS_{}".format(comp), 1)
+
+                ntasks = self._case.get_value("NTASKS_{}".format(comp))
+
+                self._case.set_value(
+                    "NTASKS_{}".format(comp), ntasks * self._config.ninst
+                )
+
+                if comp != "CPL":
+                    self._case.set_value("NINST_{}".format(comp), self._config.ninst)
+
+            self._case.flush()
+
+            case_setup(self._case, test_mode=False, reset=True)
+
+        for i in range(1, self._config.ninst + 1):
+            for component in self._config.components:
+                filename = "user_nl_{}_{:04d}".format(component, i)
+
+                self._config.generate_namelist(self._case, component, i, filename)
+
+        self.build_indv(sharedlib_only=sharedlib_only, model_only=model_only)
        
+
+
+    def _generate_baseline(self):
+        """
+        generate a new baseline case based on the current test
+        """
+        super(MVK, self)._generate_baseline()
+
+        with utils.SharedArea():
+            basegen_dir = os.path.join(
+                self._case.get_value("BASELINE_ROOT"),
+                self._case.get_value("BASEGEN_CASE"),
+            )
+
+            rundir = self._case.get_value("RUNDIR")
+            ref_case = self._case.get_value("RUN_REFCASE")
+
+            env_archive = self._case.get_env("archive")
+            hists = env_archive.get_all_hist_files(
+                self._case.get_value("CASE"),
+                self._config.component,
+                rundir,
+                ref_case=ref_case,
+            )
+            logger.debug("MVK additional baseline files: {}".format(hists))
+            hists = [os.path.join(rundir, hist) for hist in hists]
+            for hist in hists:
+                basename = hist[hist.rfind(self._config.component) :]
+                baseline = os.path.join(basegen_dir, basename)
+                if os.path.exists(baseline):
+                    os.remove(baseline)
+
+                utils.safe_copy(hist, baseline, preserve_meta=False)
+
+    def _compare_baseline(self):
+        with self._test_status:
+            if int(self._case.get_value("RESUBMIT")) > 0:
+                # This is here because the comparison is run for each submission
+                # and we only want to compare once the whole run is finished. We
+                # need to return a pass here to continue the submission process.
+                self._test_status.set_status(
+                    test_status.BASELINE_PHASE, test_status.TEST_PASS_STATUS
+                )
+                return
+
+            self._test_status.set_status(
+                test_status.BASELINE_PHASE, test_status.TEST_FAIL_STATUS
+            )
+
+            run_dir = self._case.get_value("RUNDIR")
+            case_name = self._case.get_value("CASE")
+            base_dir = os.path.join(
+                self._case.get_value("BASELINE_ROOT"),
+                self._case.get_value("BASECMP_CASE"),
+            )
+
+            test_name = "{}".format(case_name.split(".")[-1])
+
+            default_config = self._config._default_evv_test_config(
+                run_dir,
+                base_dir,
+                EVV_LIB_DIR,
+            )
+
+            test_config = self._config.evv_test_config(
+                self._case,
+                default_config,
+            )
+
+            evv_config = {test_name: test_config}
+
+            json_file = os.path.join(run_dir, f"{case_name}.json")
+            with open(json_file, "w") as config_file:
+                json.dump(evv_config, config_file, indent=4)
+
+            evv_out_dir = os.path.join(run_dir, f"{case_name}.evv")
+            evv(["-e", json_file, "-o", evv_out_dir])
+
+            self.update_testlog(test_name, case_name, evv_out_dir)
+
+
        
+[docs]
+    def update_testlog(self, test_name, case_name, evv_out_dir):
+        comments = self.process_evv_output(evv_out_dir)
+
+        status = self._test_status.get_status(test_status.BASELINE_PHASE)
+
+        mach_name = self._case.get_value("MACH")
+
+        mach_obj = Machines(machine=mach_name)
+
+        htmlroot = utils.get_htmlroot(mach_obj)
+
+        if htmlroot is not None:
+            urlroot = utils.get_urlroot(mach_obj)
+
+            with utils.SharedArea():
+                copytree(
+                    evv_out_dir,
+                    os.path.join(htmlroot, "evv", case_name),
+                    preserve_mode=False,
+                )
+
+            if urlroot is None:
+                urlroot = "[{}_URL]".format(mach_name.capitalize())
+
+            viewing = "{}/evv/{}/index.html".format(urlroot, case_name)
+        else:
+            viewing = (
+                "{}\n"
+                "    EVV viewing instructions can be found at: "
+                "        https://github.com/E3SM-Project/E3SM/blob/master/cime/scripts/"
+                "climate_reproducibility/README.md#test-passfail-and-extended-output"
+                "".format(evv_out_dir)
+            )
+
+        comments = (
+            "{} {} for test '{}'.\n"
+            "    {}\n"
+            "    EVV results can be viewed at:\n"
+            "        {}".format(
+                test_status.BASELINE_PHASE,
+                status,
+                test_name,
+                comments,
+                viewing,
+            )
+        )
+
+        utils.append_testlog(comments, self._orig_caseroot)
        
+
+
+
        
+[docs]
+    def process_evv_output(self, evv_out_dir):
+        with open(os.path.join(evv_out_dir, "index.json")) as evv_f:
+            evv_status = json.load(evv_f)
+
+        comments = ""
+
+        for evv_ele in evv_status["Page"]["elements"]:
+            if "Table" in evv_ele:
+                comments = "; ".join(
+                    "{}: {}".format(key, val[0])
+                    for key, val in evv_ele["Table"]["data"].items()
+                )
+
+                if evv_ele["Table"]["data"]["Test status"][0].lower() == "pass":
+                    with self._test_status:
+                        self._test_status.set_status(
+                            test_status.BASELINE_PHASE,
+                            test_status.TEST_PASS_STATUS,
+                        )
+
+                break
+
+        return comments
        
+
        
+
+
+
+if __name__ == "__main__":
+    _config = MVKConfig()
+    _config.print_rst_table()
+
        + +
        +
        +
        + +
        + +
        +

        © Copyright 2017, U.S. National Science Foundation and U.S. Department of Energy.

        +
        + + Built with Sphinx using a + theme + provided by Read the Docs. + + + + + +
        +
        +
        +
        +
        + + + +
        + + Read the Docs + v: master + + +
        + +
        +
        Versions
        +
        + + +
        +
        + + + + \ No newline at end of file diff --git a/branch/update-mvk-config/html/_modules/CIME/tests/test_unit_system_tests_mvk.html b/branch/update-mvk-config/html/_modules/CIME/tests/test_unit_system_tests_mvk.html new file mode 100644 index 00000000000..2f77da886a0 --- /dev/null +++ b/branch/update-mvk-config/html/_modules/CIME/tests/test_unit_system_tests_mvk.html @@ -0,0 +1,928 @@ + + + + + + CIME.tests.test_unit_system_tests_mvk — CIME master documentation + + + + + + + + + + + + + + + + + + + + + +
        + + +
        + +
        +
        +
        +
          +
          • +
        • Module code
          • +
        • CIME.tests.test_unit_system_tests_mvk
          • +
        • +
          • +
        +
        +
        +
        +
        + +

        Source code for CIME.tests.test_unit_system_tests_mvk

        +#!/usr/bin/env python3
+
+import re
+import os
+import json
+import unittest
+import tempfile
+import contextlib
+from pathlib import Path
+from unittest import mock
+
+from CIME.SystemTests.mvk import MVK
+from CIME.SystemTests.mvk import MVKConfig
+from CIME.tests.utils import chdir
+
+
+
        
+[docs]
+def create_complex_case(
+    case_name,
+    temp_dir,
+    run_dir,
+    baseline_dir,
+    compare_baseline=False,
+    mock_evv_output=False,
+):
+    case = mock.MagicMock()
+
+    side_effect = [
+        str(temp_dir),  # CASEROOT
+        "MVK.f19_g16.S.docker_gnu",  # CASEBASEID
+        "mct",  # COMP_INTERFACE
+        "mct",  # COMP_INTERFACE
+    ]
+
+    # single extra call for _compare_baseline
+    if compare_baseline:
+        side_effect.append("e3sm")  # MODEL
+
+    side_effect.extend(
+        [
+            0,  # RESUBMIT
+            False,  # GENERATE_BASELINE
+            0,  # RESUBMIT
+            str(run_dir),  # RUNDIR
+            case_name,  # CASE
+            str(baseline_dir),  # BASELINE_ROOT
+            "",  # BASECMP_CASE
+            "docker",  # MACH
+        ]
+    )
+
+    case.get_value.side_effect = side_effect
+
+    run_dir.mkdir(parents=True, exist_ok=True)
+
+    evv_output = run_dir / f"{case_name}.evv" / "index.json"
+
+    evv_output.parent.mkdir(parents=True, exist_ok=True)
+
+    write_evv_output(evv_output, mock_evv_output=mock_evv_output)
+
+    return case
        
+
+
+
+
        
+[docs]
+def write_evv_output(evv_output_path, mock_evv_output):
+    if mock_evv_output:
+        evv_output_data = {
+            "Page": {
+                "elements": [
+                    {
+                        "Table": {
+                            "data": {
+                                "Test status": ["pass"],
+                                "Variables analyzed": ["v1", "v2"],
+                                "Rejecting": [2],
+                                "Critical value": [12],
+                            }
+                        }
+                    }
+                ]
+            }
+        }
+    else:
+        evv_output_data = {"Page": {"elements": []}}
+
+    with open(evv_output_path, "w") as fd:
+        fd.write(json.dumps(evv_output_data))
        
+
+
+
+
        
+[docs]
+def create_simple_case(model="e3sm", resubmit=0, generate_baseline=False):
+    case = mock.MagicMock()
+
+    case.get_value.side_effect = (
+        "/tmp/case",  # CASEROOT
+        "MVK.f19_g16.S.docker_gnu",  # CASEBASEID
+        "mct",  # COMP_INTERFACE
+        "MVK.f19_g16.S.docker_gnu",  # CASEBASEID
+        model,
+        resubmit,
+        generate_baseline,
+    )
+
+    return case
        
+
+
+
+
        
+[docs]
+class TestSystemTestsMVK(unittest.TestCase):
+
        
+[docs]
+    def tearDown(self):
+        # reset singleton
+        try:
+            delattr(MVKConfig, "_instance")
+        except:
+            pass
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.test_mods.find_test_mods")
+    @mock.patch("CIME.SystemTests.mvk.evv")
+    def test_testmod_complex(self, evv, find_test_mods):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+            print(temp_dir)
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+            testmods_dir = temp_dir / "testmods" / "eam"
+
+            testmods_dir.mkdir(parents=True)
+
+            find_test_mods.return_value = [str(testmods_dir)]
+
+            with open(testmods_dir / "params.py", "w") as fd:
+                fd.write(
+                    """
+import os
+from CIME.namelist import Namelist
+from CIME.SystemTests.mvk import EVV_LIB_DIR
+
+component = "new-comp"
+components = ["new-comp", "secondary-comp"]
+ninst = 8
+
+def generate_namelist(case, component, i, filename):
+    nml = Namelist()
+
+    if component == "new-comp":
+        nml.set_variable_value("", "var1", "value1")
+    elif component == "secondary-comp":
+        nml.set_variable_value("", "var2", "value2")
+
+    nml.write(filename)
+
+def evv_test_config(case, config):
+    config["module"] = os.path.join(EVV_LIB_DIR, "extensions", "kso.py")
+    config["component"] = "someother-comp"
+
+    return config
+                         """
+                )
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            case = create_complex_case(case_name, temp_dir, run_dir, baseline_dir)
+            test = MVK(case)
+
+            stack.enter_context(mock.patch.object(test, "build_indv"))
+
+            test.build_phase(False, True)
+            test._compare_baseline()
+
+            with open(run_dir / f"{case_name}.json", "r") as fd:
+                config = json.load(fd)
+
+            expected_config = {
+                "20240515_212034_41b5u2": {
+                    "component": "someother-comp",
+                    "ninst": 8,
+                    "ref-case": "Baseline",
+                    "ref-dir": f"{temp_dir}/baselines/",
+                    "test-case": "Test",
+                    "test-dir": f"{temp_dir}/run",
+                    "var-set": "default",
+                }
+            }
+
+            module = config["20240515_212034_41b5u2"].pop("module")
+
+            assert (
+                re.search(
+                    r"/opt/conda/lib/python.*/site-packages/evv4esm/extensions/kso.py",
+                    module,
+                )
+                is not None
+            )
+            assert config == expected_config
+
+            nml_files = [x for x in os.listdir(temp_dir) if x.startswith("user_nl")]
+
+            assert len(nml_files) == 16
+
+            with open(sorted(nml_files)[0], "r") as fd:
+                lines = fd.readlines()
+
+            assert lines == ["var1 = value1\n"]
+
+            with open(sorted(nml_files)[-1], "r") as fd:
+                lines = fd.readlines()
+
+            assert lines == ["var2 = value2\n"]
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.utils.append_testlog")
+    @mock.patch("CIME.SystemTests.mvk.Machines")
+    def test_update_testlog(self, machines, append_testlog):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            run_dir.mkdir(parents=True)
+
+            evv_output_path = run_dir / "index.json"
+
+            write_evv_output(evv_output_path, True)
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            machines.return_value.get_value.return_value = "docker"
+
+            case = create_complex_case(case_name, temp_dir, run_dir, baseline_dir)
+
+            test = MVK(case)
+
+            test.update_testlog("test1", case_name, str(run_dir))
+
+            append_testlog.assert_any_call(
+                """BASELINE PASS for test 'test1'.
+    Test status: pass; Variables analyzed: v1; Rejecting: 2; Critical value: 12
+    EVV results can be viewed at:
+        docker/evv/MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2/index.html""",
+                str(temp_dir),
+            )
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.utils.get_urlroot")
+    @mock.patch("CIME.SystemTests.mvk.utils.append_testlog")
+    @mock.patch("CIME.SystemTests.mvk.Machines")
+    def test_update_testlog_urlroot_None(self, machines, append_testlog, get_urlroot):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            run_dir.mkdir(parents=True)
+
+            evv_output_path = run_dir / "index.json"
+
+            write_evv_output(evv_output_path, True)
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            machines.return_value.get_value.return_value = "docker"
+
+            get_urlroot.return_value = None
+
+            case = create_complex_case(case_name, temp_dir, run_dir, baseline_dir)
+
+            test = MVK(case)
+
+            test.update_testlog("test1", case_name, str(run_dir))
+
+            print(append_testlog.call_args_list)
+            append_testlog.assert_any_call(
+                f"""BASELINE PASS for test 'test1'.
+    Test status: pass; Variables analyzed: v1; Rejecting: 2; Critical value: 12
+    EVV results can be viewed at:
+        [{run_dir!s}_URL]/evv/MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2/index.html""",
+                str(temp_dir),
+            )
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.utils.get_htmlroot")
+    @mock.patch("CIME.SystemTests.mvk.utils.append_testlog")
+    @mock.patch("CIME.SystemTests.mvk.Machines")
+    def test_update_testlog_htmlroot(self, machines, append_testlog, get_htmlroot):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            run_dir.mkdir(parents=True)
+
+            evv_output_path = run_dir / "index.json"
+
+            write_evv_output(evv_output_path, True)
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            machines.return_value.get_value.return_value = "docker"
+
+            get_htmlroot.return_value = None
+
+            case = create_complex_case(case_name, temp_dir, run_dir, baseline_dir)
+
+            test = MVK(case)
+
+            test.update_testlog("test1", case_name, str(run_dir))
+
+            append_testlog.assert_any_call(
+                f"""BASELINE PASS for test 'test1'.
+    Test status: pass; Variables analyzed: v1; Rejecting: 2; Critical value: 12
+    EVV results can be viewed at:
+        {run_dir!s}
+    EVV viewing instructions can be found at:         https://github.com/E3SM-Project/E3SM/blob/master/cime/scripts/climate_reproducibility/README.md#test-passfail-and-extended-output""",
+                str(temp_dir),
+            )
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.test_mods.find_test_mods")
+    @mock.patch("CIME.SystemTests.mvk.evv")
+    def test_testmod_simple(self, evv, find_test_mods):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+            testmods_dir = temp_dir / "testmods" / "eam"
+
+            testmods_dir.mkdir(parents=True)
+
+            find_test_mods.return_value = [str(testmods_dir)]
+
+            with open(testmods_dir / "params.py", "w") as fd:
+                fd.write(
+                    """
+component = "new-comp"
+components = ["new-comp", "second-comp"]
+ninst = 8
+var_set = "special"
+ref_case = "Reference"
+test_case = "Default"
+                         """
+                )
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            case = create_complex_case(case_name, temp_dir, run_dir, baseline_dir)
+
+            test = MVK(case)
+
+            stack.enter_context(mock.patch.object(test, "build_indv"))
+
+            test.build_phase(False, True)
+            test._compare_baseline()
+
+            with open(run_dir / f"{case_name}.json", "r") as fd:
+                config = json.load(fd)
+
+            expected_config = {
+                "20240515_212034_41b5u2": {
+                    "test-case": "Default",
+                    "test-dir": f"{run_dir}",
+                    "ref-case": "Reference",
+                    "ref-dir": f"{baseline_dir}/",
+                    "var-set": "special",
+                    "ninst": 8,
+                    "component": "new-comp",
+                }
+            }
+
+            module = config["20240515_212034_41b5u2"].pop("module")
+
+            assert (
+                re.search(
+                    r"/opt/conda/lib/python.*/site-packages/evv4esm/extensions/ks.py",
+                    module,
+                )
+                is not None
+            )
+            assert config == expected_config
+
+            nml_files = [x for x in os.listdir(temp_dir) if x.startswith("user_nl")]
+
+            assert len(nml_files) == 16
+
+            with open(sorted(nml_files)[0], "r") as fd:
+                lines = fd.readlines()
+
+            assert lines == [
+                "new_random = .true.\n",
+                "pertlim = 1.0e-10\n",
+                "seed_clock = .true.\n",
+                "seed_custom = 1\n",
+            ]
+
+            with open(sorted(nml_files)[-1], "r") as fd:
+                lines = fd.readlines()
+
+            assert lines == [
+                "new_random = .true.\n",
+                "pertlim = 1.0e-10\n",
+                "seed_clock = .true.\n",
+                "seed_custom = 8\n",
+            ]
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.case_setup")
+    @mock.patch("CIME.SystemTests.mvk.MVK.build_indv")
+    def test_build_phase(self, build_indv, case_setup):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            case = create_complex_case(
+                case_name, temp_dir, run_dir, baseline_dir, True, mock_evv_output=True
+            )
+
+            case.get_values.side_effect = (("CPL", "LND"),)
+
+            side_effect = [x for x in case.get_value.side_effect]
+
+            n = 7
+            side_effect.insert(n, 8)
+            side_effect.insert(n, 16)
+
+            case.get_value.side_effect = side_effect
+
+            test = MVK(case)
+
+            test.build_phase(sharedlib_only=True)
+
+            case.set_value.assert_any_call("NTHRDS_CPL", 1)
+            case.set_value.assert_any_call("NTASKS_CPL", 480)
+            case.set_value.assert_any_call("NTHRDS_LND", 1)
+            case.set_value.assert_any_call("NTASKS_LND", 240)
+            case.set_value.assert_any_call("NINST_LND", 30)
+
+            case.flush.assert_called()
+
+            case_setup.assert_any_call(case, test_mode=False, reset=True)
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.SystemTestsCommon._generate_baseline")
+    @mock.patch("CIME.SystemTests.mvk.utils.append_testlog")
+    @mock.patch("CIME.SystemTests.mvk.evv")
+    def test__generate_baseline(self, evv, append_testlog, _generate_baseline):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            case = create_complex_case(
+                case_name, temp_dir, run_dir, baseline_dir, True, mock_evv_output=True
+            )
+
+            # use original 5 args
+            side_effect = [x for x in case.get_value.side_effect][:7]
+
+            side_effect.extend(
+                [
+                    str(baseline_dir),
+                    "MVK.f19_g16.S",
+                    str(run_dir),
+                    "MVK.f19_g16.S",
+                    case_name,
+                ]
+            )
+
+            case.get_value.side_effect = side_effect
+
+            case_baseline_dir = baseline_dir / "MVK.f19_g16.S" / "eam"
+
+            case_baseline_dir.mkdir(parents=True, exist_ok=True)
+
+            (run_dir / "eam").mkdir(parents=True, exist_ok=True)
+
+            (run_dir / "eam" / "test1.nc").touch()
+            (run_dir / "eam" / "test2.nc").touch()
+
+            case.get_env.return_value.get_all_hist_files.return_value = (
+                "eam/test1.nc",
+                "eam/test2.nc",
+            )
+
+            test = MVK(case)
+
+            test._generate_baseline()
+
+            files = os.listdir(case_baseline_dir)
+
+            assert files == ["test1.nc", "test2.nc"]
+
+            # reset side_effect
+            case.get_value.side_effect = side_effect
+
+            test = MVK(case)
+
+            # test baseline_dir already exists
+            test._generate_baseline()
+
+            files = os.listdir(case_baseline_dir)
+
+            assert files == ["test1.nc", "test2.nc"]
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.utils.append_testlog")
+    @mock.patch("CIME.SystemTests.mvk.evv")
+    def test__compare_baseline_resubmit(self, evv, append_testlog):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            case = create_complex_case(
+                case_name, temp_dir, run_dir, baseline_dir, True, mock_evv_output=True
+            )
+
+            side_effect = [x for x in case.get_value.side_effect][:-8]
+
+            side_effect.extend([1, 1])
+
+            case.get_value.side_effect = side_effect
+
+            test = MVK(case)
+
+            with mock.patch.object(test, "_test_status") as _test_status:
+                test._compare_baseline()
+
+            _test_status.set_status.assert_any_call("BASELINE", "PASS")
        
+
+
+
        
+[docs]
+    @mock.patch("CIME.SystemTests.mvk.utils.append_testlog")
+    @mock.patch("CIME.SystemTests.mvk.evv")
+    def test__compare_baseline(self, evv, append_testlog):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            # convert to Path
+            temp_dir = Path(temp_dir)
+            run_dir = temp_dir / "run"
+            baseline_dir = temp_dir / "baselines"
+
+            case_name = "MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2"  # CASE
+
+            case = create_complex_case(
+                case_name, temp_dir, run_dir, baseline_dir, True, mock_evv_output=True
+            )
+
+            test = MVK(case)
+
+            test._compare_baseline()
+
+            with open(run_dir / f"{case_name}.json", "r") as fd:
+                config = json.load(fd)
+
+            expected_config = {
+                "20240515_212034_41b5u2": {
+                    "test-case": "Test",
+                    "test-dir": f"{run_dir}",
+                    "ref-case": "Baseline",
+                    "ref-dir": f"{baseline_dir}/",
+                    "var-set": "default",
+                    "ninst": 30,
+                    "component": "eam",
+                }
+            }
+
+            module = config["20240515_212034_41b5u2"].pop("module")
+
+            assert (
+                re.search(
+                    r"/opt/conda/lib/python.*/site-packages/evv4esm/extensions/ks.py",
+                    module,
+                )
+                is not None
+            )
+            assert config == expected_config
+
+            expected_comments = f"""BASELINE PASS for test '20240515_212034_41b5u2'.
+    Test status: pass; Variables analyzed: v1; Rejecting: 2; Critical value: 12
+    EVV results can be viewed at:
+        {run_dir}/MVK.f19_g16.S.docker_gnu.20240515_212034_41b5u2.evv
+    EVV viewing instructions can be found at:         https://github.com/E3SM-Project/E3SM/blob/master/cime/scripts/climate_reproducibility/README.md#test-passfail-and-extended-output"""
+
+            append_testlog.assert_any_call(
+                expected_comments, str(temp_dir)
+            ), append_testlog.call_args.args
        
+
+
+
        
+[docs]
+    def test_generate_namelist_multiple_components(self):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            case = create_simple_case()
+
+            test = MVK(case)
+
+            stack.enter_context(mock.patch.object(test, "build_indv"))
+
+            test._config.components = ["eam", "elm"]
+
+            test.build_phase(False, True)
+
+            nml_files = os.listdir(temp_dir)
+
+            assert len(nml_files) == 60
+
+            with open(sorted(nml_files)[0], "r") as fd:
+                lines = fd.readlines()
+
+            assert lines == [
+                "new_random = .true.\n",
+                "pertlim = 1.0e-10\n",
+                "seed_clock = .true.\n",
+                "seed_custom = 1\n",
+            ]
        
+
+
+
        
+[docs]
+    def test_generate_namelist(self):
+        with contextlib.ExitStack() as stack:
+            temp_dir = stack.enter_context(tempfile.TemporaryDirectory())
+
+            stack.enter_context(chdir(temp_dir))
+
+            case = create_simple_case()
+
+            test = MVK(case)
+
+            stack.enter_context(mock.patch.object(test, "build_indv"))
+
+            test.build_phase(False, True)
+
+            nml_files = os.listdir(temp_dir)
+
+            assert len(nml_files) == 30
+
+            with open(sorted(nml_files)[0], "r") as fd:
+                lines = fd.readlines()
+
+            assert lines == [
+                "new_random = .true.\n",
+                "pertlim = 1.0e-10\n",
+                "seed_clock = .true.\n",
+                "seed_custom = 1\n",
+            ]
        
+
+
+
        
+[docs]
+    def test_compare_baseline(self):
+        case = create_simple_case()
+
+        MVK(case)
+
+        case.set_value.assert_any_call("COMPARE_BASELINE", True)
+
+        case = create_simple_case(generate_baseline=True)
+
+        MVK(case)
+
+        case.set_value.assert_any_call("COMPARE_BASELINE", False)
+
+        case = create_simple_case(resubmit=1, generate_baseline=True)
+
+        MVK(case)
+
+        case.set_value.assert_any_call("COMPARE_BASELINE", False)
        
+
+
+
        
+[docs]
+    def test_mvk(self):
+        case = create_simple_case()
+
+        test = MVK(case)
+
+        assert test._config.component == "eam"
+        assert test._config.components == ["eam"]
+
+        case = create_simple_case("cesm")
+
+        test = MVK(case)
+
+        assert test._config.component == "cam"
+        assert test._config.components == ["cam"]
        
+
        
+
+
        + +
        +
        +
        + +
        + +
        +

        © Copyright 2017, U.S. National Science Foundation and U.S. Department of Energy.

        +
        + + Built with Sphinx using a + theme + provided by Read the Docs. + + + + + +
        +
        +
        +
        +
        + + + +
        + + Read the Docs + v: master + + +
        + +
        +
        Versions
        +
        + + +
        +
        + + + + \ No newline at end of file diff --git a/branch/update-mvk-config/html/_modules/index.html b/branch/update-mvk-config/html/_modules/index.html index e6ba45594aa..cf5db0f9a8b 100644 --- a/branch/update-mvk-config/html/_modules/index.html +++ b/branch/update-mvk-config/html/_modules/index.html @@ -110,6 +110,7 @@

        All modules for which code is available

      • CIME.SystemTests.irt
      • CIME.SystemTests.ldsta
      • CIME.SystemTests.mcc
        • +
      • CIME.SystemTests.mvk
      • CIME.SystemTests.nck
      • CIME.SystemTests.ncr
      • CIME.SystemTests.nodefail
        • @@ -248,6 +249,7 @@

        All modules for which code is available

      • CIME.tests.test_unit_nmlgen
      • CIME.tests.test_unit_paramgen
      • CIME.tests.test_unit_system_tests
        • +
      • CIME.tests.test_unit_system_tests_mvk
      • CIME.tests.test_unit_test_status
      • CIME.tests.test_unit_two_link_to_case2_output
      • CIME.tests.test_unit_user_mod_support
        • diff --git a/branch/update-mvk-config/html/genindex.html b/branch/update-mvk-config/html/genindex.html index af66ae4a47f..3fb199b6527 100644 --- a/branch/update-mvk-config/html/genindex.html +++ b/branch/update-mvk-config/html/genindex.html @@ -272,6 +272,8 @@

        B

      • (CIME.SystemTests.hommebaseclass.HommeBase method)
      • (CIME.SystemTests.icp.ICP method) +
        • +
      • (CIME.SystemTests.mvk.MVK method)
      • (CIME.SystemTests.system_tests_common.FakeTest method)
        • @@ -946,6 +948,13 @@

        C

        +
      • + CIME.SystemTests.mvk + +
      • @@ -1403,6 +1412,13 @@

        C

        • +
      • + CIME.tests.test_unit_system_tests_mvk + +
      • @@ -1939,6 +1955,8 @@

        C

      • (in module CIME.case.case_clone)

      • +
    • create_complex_case() (in module CIME.tests.test_unit_system_tests_mvk) +
    • create_cs_status() (in module CIME.cs_status_creator)
    • create_dirs() (CIME.case.case.Case method) @@ -1974,6 +1992,8 @@

      C

  • create_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method) +
    • +
  • create_simple_case() (in module CIME.tests.test_unit_system_tests_mvk)
  • create_stream_file_and_update_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method)
    • @@ -2083,10 +2103,10 @@

    E

  • ERI (class in CIME.SystemTests.eri)
    • - - + @@ -3508,10 +3540,10 @@

    P

  • perf_write_baseline() (in module CIME.baselines.performance)
    • - - +
  • TemporaryDirectory (class in CIME.tests.utils) +
    • +
  • test__compare_baseline() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method) +
    • +
  • test__compare_baseline_resubmit() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method) +
    • +
  • test__generate_baseline() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test__perf_get_memory() (CIME.tests.test_unit_baselines_performance.TestUnitBaselinesPerformance method)
    • @@ -4229,6 +4271,8 @@

    T

  • test_bless_throughput_only() (CIME.tests.test_unit_bless_test_results.TestUnitBlessTestResults method)
  • test_bless_throughput_report_only() (CIME.tests.test_unit_bless_test_results.TestUnitBlessTestResults method) +
    • +
  • test_build_phase() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test_c_create_clone_keepexe() (CIME.tests.test_sys_create_newcase.TestCreateNewcase method)
    • @@ -4331,6 +4375,8 @@

    T

  • test_cmd_arg() (CIME.tests.test_unit_case.TestCase_RecordCmd method)
  • test_cmd_path() (CIME.tests.test_unit_xml_env_mach_specific.TestXMLEnvMachSpecific method) +
    • +
  • test_compare_baseline() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test_compare_fails() (CIME.tests.test_unit_compare_two.TestSystemTestsCompareTwo method)
    • @@ -4475,6 +4521,10 @@

    T

  • test_gen_domain() (CIME.tests.test_sys_grid_generation.TestGridGeneration method)
  • test_generate_baseline() (CIME.tests.test_unit_system_tests.TestUnitSystemTests method) +
    • +
  • test_generate_namelist() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method) +
    • +
  • test_generate_namelist_multiple_components() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test_get_aprun_mode_default() (CIME.tests.test_unit_xml_env_mach_specific.TestXMLEnvMachSpecific method)
    • @@ -4631,6 +4681,8 @@

    T

  • TEST_MPILIB (CIME.tests.base.BaseTestCase attribute)
  • test_multiple_files() (CIME.tests.test_unit_bless_test_results.TestUnitBlessTestResults method) +
    • +
  • test_mvk() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test_n_createnewcase_bad_compset() (CIME.tests.test_sys_create_newcase.TestCreateNewcase method)
    • @@ -4825,6 +4877,10 @@

    T

  • test_support_single_exe() (CIME.tests.test_unit_xml_tests.TestXMLTests method)
  • test_support_single_exe_error() (CIME.tests.test_unit_xml_tests.TestXMLTests method) +
    • +
  • test_testmod_complex() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method) +
    • +
  • test_testmod_simple() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test_testmods() (CIME.tests.test_sys_test_scheduler.TestTestScheduler method)
    • @@ -4843,6 +4899,12 @@

    T

  • test_unlock_file() (CIME.tests.test_unit_locked_files.TestLockedFiles method)
  • test_unlock_file_error_path() (CIME.tests.test_unit_locked_files.TestLockedFiles method) +
    • +
  • test_update_testlog() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method) +
    • +
  • test_update_testlog_htmlroot() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method) +
    • +
  • test_update_testlog_urlroot_None() (CIME.tests.test_unit_system_tests_mvk.TestSystemTestsMVK method)
  • test_user_concurrent_mods() (CIME.tests.test_sys_user_concurrent_mods.TestUserConcurrentMods method)
    • @@ -4995,6 +5057,8 @@

    T

  • TestStatus (class in CIME.test_status)
  • TestSystemTestsCompareTwo (class in CIME.tests.test_unit_compare_two) +
    • +
  • TestSystemTestsMVK (class in CIME.tests.test_unit_system_tests_mvk)
  • TESTTESTDIFF (class in CIME.SystemTests.system_tests_common)
    • @@ -5107,6 +5171,8 @@

    U

  • update_shr_strdata_nml() (CIME.nmlgen.NamelistGenerator method)
  • update_test_status() (CIME.XML.testspec.TestSpec method) +
    • +
  • update_testlog() (CIME.SystemTests.mvk.MVK method)
  • user namelist files (CASEROOT/user_nl_*)
    • @@ -5160,11 +5226,13 @@

    W

  • (CIME.XML.generic_xml.GenericXML method)
    • - - +
    • write_config_grids() (in module CIME.tests.test_unit_xml_grids) +
      • +
    • write_evv_output() (in module CIME.tests.test_unit_system_tests_mvk)
    • write_modelio_file() (CIME.nmlgen.NamelistGenerator method)
      • diff --git a/branch/update-mvk-config/html/objects.inv b/branch/update-mvk-config/html/objects.inv index c2f6b76549ffd3ccc718865419a848fd819fcda8..e86a1f7497b8591d6b802e7260bee6ece9df18ab 100644 GIT binary patch delta 15215 zcmV-#JCMYKivjJ70g#Cl9M2qky~pA3hFVhh$fwmUOX@S@k)1YwKb>ES1kcaHAK;JW zwuqw-^4sE1=ZiB;{8)z3>M>0tK2WmCGzPK^(qtWO%A66yEkF6s?9%6m8$>?m=Rc0X zPQzPnSm8ZE4zJke%wMq;vd)Tax}u~Jh(EkMO^d_8zxYwf=%G0|bYq09%OohmG;zkv zcHW9*ELm}H9Y&0Q6M}D8!g9Z09!p-l*blZI&sY$y!@!Qn1Iu4nJ~ZD{j_%o^Kdy_6 z0Al&+@veVLHBkDBFQLKNTgVGOFi0js6`2>Mn=o-k5_4h|<}4`Ed`AHWm9)meAruB4 z$KS5q)sAG^cS{;vMK(`T{nw`HS zuB|R0mJfgbv*`g{0buy$nT(^C=jH9+|3<(Oz>v-)jhW?Xz&Q8V%ZrzmMOGGM&}FuQ z%Lmx(qjWacBm3i%e#B$1C@dytYgl|WN`ttyuWsq#dGnmpUZ#y1bXa;FCMI zC1;^H)Ek2c8g}cbqE){?T;F`XdHi(q<=T0oaP~VDp8_dr`EdPT&K$*LEhnIs54Y}Z zgn!H7A|$OiP7^W?_o2}eh+;GjVUvpFlN$st0{b$POaxm3(;Jhi1Z)Lc)1V)WlNtq1 z7Jhs%(SP)mTAX`DiYY%Gn-{v#gm>bTeg!8i@DhblrPIg#MTeN^rq0RCaRk)z@xl2> zreH`Xx5jjvDPzv(1CHYIlQ9ellhFkr2XX)&Cu01?llTQv7*|;+uZ}D@ht(-(S(+Dv 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        CIME.SystemTests.mcc + + +     + CIME.SystemTests.mvk +     @@ -797,6 +802,11 @@

    Python Module Index

        CIME.tests.test_unit_system_tests + + +     + CIME.tests.test_unit_system_tests_mvk +     diff --git a/branch/update-mvk-config/html/searchindex.js b/branch/update-mvk-config/html/searchindex.js index 9e5fed8d93a..a59dd7cd22d 100644 --- a/branch/update-mvk-config/html/searchindex.js +++ b/branch/update-mvk-config/html/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"Adding a \u2013user-mods-dir argument to create_newcase": [[87, "adding-a-user-mods-dir-argument-to-create-newcase"]], "Adding components": [[69, null]], "Adding grids": [[88, "adding-grids"]], "Adding to the appropriate cmake file": [[100, "adding-to-the-appropriate-cmake-file"]], "Advice on setting your wallclock time": [[98, "advice-on-setting-your-wallclock-time"]], "An MPI example": [[94, "an-mpi-example"]], "Appendices": [[74, "appendices"]], "Archiving model output data": [[95, "archiving-model-output-data"]], "Assertion methods": [[100, "assertion-methods"]], "Backing up to a previous restart": [[95, "backing-up-to-a-previous-restart"]], "Baselines and Baseline Testing": [[97, "baselines-and-baseline-testing"]], "Batch system definition": [[91, "batch-system-definition"]], "Building a Case": [[78, null]], "Building a Coupled Model with CIME": [[70, null]], "Building pFUnit": [[100, "building-pfunit"]], "CAM": [[79, "cam"]], "CCS and your environment": [[90, "ccs-and-your-environment"]], "CESM Coupled Model XML Files": [[104, null]], "CESM Linux and Mac Support": [[94, "cesm-linux-and-mac-support"]], "CESM-ECT (CESM Ensemble Consistency Test):": [[75, null]], "CICE": [[79, "cice"]], "CIME": [[15, null]], "CIME Atmosphere Data and Stub XML Files": [[103, null]], "CIME ESP Data and Stub XML Files": [[109, null]], "CIME Land Data and Stub XML Files": [[111, null]], "CIME Land Ice Data and Stub XML Files": [[112, null]], "CIME Load Balancing Tool": [[77, null]], "CIME Ocean Data and Stub XML Files": [[113, null]], "CIME River Runoff Data and Stub XML Files": [[114, null]], "CIME Sea Ice Data and Stub XML Files": [[115, null]], "CIME Wave Data and Stub XML Files": [[116, null]], "CIME config": [[81, "cime-config"]], "CIME config and hooks": [[81, null]], "CIME directory content": [[82, "id2"]], "CIME directory in a climate model": [[82, "id1"]], "CIME documentation": [[74, null]], "CIME hooks": [[81, "cime-hooks"]], "CIME package": [[0, null]], "CIME user config directory": [[80, null]], "CIME.BuildTools package": [[1, null]], "CIME.BuildTools.configure module": [[1, "module-CIME.BuildTools.configure"]], "CIME.Servers package": [[2, null]], "CIME.Servers.ftp module": [[2, "module-CIME.Servers.ftp"]], "CIME.Servers.generic_server module": [[2, "module-CIME.Servers.generic_server"]], "CIME.Servers.gftp module": [[2, "module-CIME.Servers.gftp"]], "CIME.Servers.svn module": [[2, "module-CIME.Servers.svn"]], "CIME.Servers.wget module": [[2, "module-CIME.Servers.wget"]], "CIME.SystemTests package": [[3, null]], "CIME.SystemTests.dae module": [[3, "module-CIME.SystemTests.dae"]], "CIME.SystemTests.eri module": [[3, "module-CIME.SystemTests.eri"]], "CIME.SystemTests.erio module": [[3, "module-CIME.SystemTests.erio"]], "CIME.SystemTests.erp module": [[3, "module-CIME.SystemTests.erp"]], "CIME.SystemTests.err module": [[3, "module-CIME.SystemTests.err"]], "CIME.SystemTests.erri module": [[3, "module-CIME.SystemTests.erri"]], "CIME.SystemTests.ers module": [[3, "module-CIME.SystemTests.ers"]], "CIME.SystemTests.ers2 module": [[3, "module-CIME.SystemTests.ers2"]], "CIME.SystemTests.ert module": [[3, "module-CIME.SystemTests.ert"]], "CIME.SystemTests.funit module": [[3, "module-CIME.SystemTests.funit"]], "CIME.SystemTests.homme module": [[3, "module-CIME.SystemTests.homme"]], "CIME.SystemTests.hommebaseclass module": [[3, "module-CIME.SystemTests.hommebaseclass"]], "CIME.SystemTests.hommebfb module": [[3, "module-CIME.SystemTests.hommebfb"]], "CIME.SystemTests.icp module": [[3, "module-CIME.SystemTests.icp"]], "CIME.SystemTests.irt module": [[3, "module-CIME.SystemTests.irt"]], "CIME.SystemTests.ldsta module": [[3, "module-CIME.SystemTests.ldsta"]], "CIME.SystemTests.mcc module": [[3, "module-CIME.SystemTests.mcc"]], "CIME.SystemTests.mvk module": [[3, "cime-systemtests-mvk-module"]], "CIME.SystemTests.nck module": [[3, "module-CIME.SystemTests.nck"]], "CIME.SystemTests.ncr module": [[3, "module-CIME.SystemTests.ncr"]], "CIME.SystemTests.nodefail module": [[3, "module-CIME.SystemTests.nodefail"]], "CIME.SystemTests.pea module": [[3, "module-CIME.SystemTests.pea"]], "CIME.SystemTests.pem module": [[3, "module-CIME.SystemTests.pem"]], "CIME.SystemTests.pet module": [[3, "module-CIME.SystemTests.pet"]], "CIME.SystemTests.pfs module": [[3, "module-CIME.SystemTests.pfs"]], "CIME.SystemTests.pgn module": [[3, "cime-systemtests-pgn-module"]], "CIME.SystemTests.pre module": [[3, "module-CIME.SystemTests.pre"]], "CIME.SystemTests.rep module": [[3, "module-CIME.SystemTests.rep"]], "CIME.SystemTests.restart_tests module": [[3, "module-CIME.SystemTests.restart_tests"]], "CIME.SystemTests.reuseinitfiles module": [[3, "module-CIME.SystemTests.reuseinitfiles"]], "CIME.SystemTests.seq module": [[3, "module-CIME.SystemTests.seq"]], "CIME.SystemTests.sms module": [[3, "module-CIME.SystemTests.sms"]], "CIME.SystemTests.system_tests_common module": [[3, "module-CIME.SystemTests.system_tests_common"]], "CIME.SystemTests.system_tests_compare_n module": [[3, "module-CIME.SystemTests.system_tests_compare_n"]], "CIME.SystemTests.system_tests_compare_two module": [[3, "module-CIME.SystemTests.system_tests_compare_two"]], "CIME.SystemTests.test_mods module": [[3, "module-CIME.SystemTests.test_mods"]], "CIME.SystemTests.test_utils package": [[4, null]], "CIME.SystemTests.test_utils.user_nl_utils module": [[4, "module-CIME.SystemTests.test_utils.user_nl_utils"]], "CIME.SystemTests.tsc module": [[3, "module-CIME.SystemTests.tsc"]], "CIME.Tools package": [[5, null]], "CIME.Tools.generate_cylc_workflow module": [[5, "module-CIME.Tools.generate_cylc_workflow"]], "CIME.Tools.standard_script_setup module": [[5, "module-CIME.Tools.standard_script_setup"]], "CIME.Tools.testreporter module": [[5, "module-CIME.Tools.testreporter"]], "CIME.XML package": [[6, null]], "CIME.XML.archive module": [[6, "module-CIME.XML.archive"]], "CIME.XML.archive_base module": [[6, "module-CIME.XML.archive_base"]], "CIME.XML.batch module": [[6, "module-CIME.XML.batch"]], "CIME.XML.component module": [[6, "module-CIME.XML.component"]], "CIME.XML.compsets module": [[6, "module-CIME.XML.compsets"]], "CIME.XML.entry_id module": [[6, "module-CIME.XML.entry_id"]], "CIME.XML.env_archive module": [[6, "module-CIME.XML.env_archive"]], "CIME.XML.env_base module": [[6, "module-CIME.XML.env_base"]], "CIME.XML.env_batch module": [[6, "module-CIME.XML.env_batch"]], "CIME.XML.env_build module": [[6, "module-CIME.XML.env_build"]], "CIME.XML.env_case module": [[6, "module-CIME.XML.env_case"]], "CIME.XML.env_mach_pes module": [[6, "module-CIME.XML.env_mach_pes"]], "CIME.XML.env_mach_specific module": [[6, "module-CIME.XML.env_mach_specific"]], "CIME.XML.env_run module": [[6, "module-CIME.XML.env_run"]], "CIME.XML.env_test module": [[6, "module-CIME.XML.env_test"]], "CIME.XML.env_workflow module": [[6, "module-CIME.XML.env_workflow"]], "CIME.XML.expected_fails_file module": [[6, "module-CIME.XML.expected_fails_file"]], "CIME.XML.files module": [[6, "module-CIME.XML.files"]], "CIME.XML.generic_xml module": [[6, "module-CIME.XML.generic_xml"]], "CIME.XML.grids module": [[6, "module-CIME.XML.grids"]], "CIME.XML.headers module": [[6, "module-CIME.XML.headers"]], "CIME.XML.inputdata module": [[6, "module-CIME.XML.inputdata"]], "CIME.XML.machines module": [[6, "module-CIME.XML.machines"]], "CIME.XML.namelist_definition module": [[6, "module-CIME.XML.namelist_definition"]], "CIME.XML.pes module": [[6, "module-CIME.XML.pes"]], "CIME.XML.pio module": [[6, "module-CIME.XML.pio"]], "CIME.XML.standard_module_setup module": [[6, "module-CIME.XML.standard_module_setup"]], "CIME.XML.stream module": [[6, "module-CIME.XML.stream"]], "CIME.XML.test_reporter module": [[6, "module-CIME.XML.test_reporter"]], "CIME.XML.testlist module": [[6, "module-CIME.XML.testlist"]], "CIME.XML.tests module": [[6, "module-CIME.XML.tests"]], "CIME.XML.testspec module": [[6, "module-CIME.XML.testspec"]], "CIME.XML.workflow module": [[6, "module-CIME.XML.workflow"]], "CIME.aprun module": [[0, "module-CIME.aprun"]], "CIME.baselines package": [[7, null]], "CIME.baselines.performance module": [[7, "module-CIME.baselines.performance"]], "CIME.bless_test_results module": [[0, "module-CIME.bless_test_results"]], "CIME.build module": [[0, "module-CIME.build"]], "CIME.build_scripts package": [[8, null]], "CIME.buildlib module": [[0, "module-CIME.buildlib"]], "CIME.buildnml module": [[0, "module-CIME.buildnml"]], "CIME.case package": [[9, null]], "CIME.case.case module": [[9, "module-CIME.case.case"]], "CIME.case.case_clone module": [[9, "module-CIME.case.case_clone"]], "CIME.case.case_cmpgen_namelists module": [[9, "module-CIME.case.case_cmpgen_namelists"]], "CIME.case.case_run module": [[9, "module-CIME.case.case_run"]], "CIME.case.case_setup module": [[9, "module-CIME.case.case_setup"]], "CIME.case.case_st_archive module": [[9, "module-CIME.case.case_st_archive"]], "CIME.case.case_submit module": [[9, "module-CIME.case.case_submit"]], "CIME.case.case_test module": [[9, "module-CIME.case.case_test"]], "CIME.case.check_input_data module": [[9, "module-CIME.case.check_input_data"]], "CIME.case.preview_namelists module": [[9, "module-CIME.case.preview_namelists"]], "CIME.code_checker module": [[0, "module-CIME.code_checker"]], "CIME.compare_namelists module": [[0, "module-CIME.compare_namelists"]], "CIME.compare_test_results module": [[0, "module-CIME.compare_test_results"]], "CIME.config module": [[0, "module-CIME.config"]], "CIME.cs_status module": [[0, "module-CIME.cs_status"]], "CIME.cs_status_creator module": [[0, "module-CIME.cs_status_creator"]], "CIME.data package": [[10, null]], "CIME.data.config package": [[11, null]], "CIME.data.templates package": [[12, null]], "CIME.date module": [[0, "module-CIME.date"]], "CIME.expected_fails module": [[0, "module-CIME.expected_fails"]], "CIME.get_tests module": [[0, "module-CIME.get_tests"]], "CIME.get_timing module": [[0, "module-CIME.get_timing"]], "CIME.gitinterface module": [[0, "module-CIME.gitinterface"]], "CIME.hist_utils module": [[0, "module-CIME.hist_utils"]], "CIME.jenkins_generic_job module": [[0, "module-CIME.jenkins_generic_job"]], "CIME.locked_files module": [[0, "module-CIME.locked_files"]], "CIME.namelist module": [[0, "module-CIME.namelist"]], "CIME.nmlgen module": [[0, "module-CIME.nmlgen"]], "CIME.provenance module": [[0, "module-CIME.provenance"]], "CIME.scripts package": [[13, null]], "CIME.scripts.create_clone module": [[13, "module-CIME.scripts.create_clone"]], "CIME.scripts.create_newcase module": [[13, "module-CIME.scripts.create_newcase"]], "CIME.scripts.create_test module": [[13, "module-CIME.scripts.create_test"]], "CIME.scripts.query_config module": [[13, "module-CIME.scripts.query_config"]], "CIME.scripts.query_testlists module": [[13, "module-CIME.scripts.query_testlists"]], "CIME.simple_compare module": [[0, "module-CIME.simple_compare"]], "CIME.status module": [[0, "module-CIME.status"]], "CIME.test_scheduler module": [[0, "module-CIME.test_scheduler"]], "CIME.test_status module": [[0, "module-CIME.test_status"]], "CIME.test_utils module": [[0, "module-CIME.test_utils"]], "CIME.tests package": [[14, null]], "CIME.tests.base module": [[14, "module-CIME.tests.base"]], "CIME.tests.case_fake module": [[14, "module-CIME.tests.case_fake"]], "CIME.tests.custom_assertions_test_status module": [[14, "module-CIME.tests.custom_assertions_test_status"]], "CIME.tests.scripts_regression_tests module": [[14, "module-CIME.tests.scripts_regression_tests"]], "CIME.tests.test_sys_bless_tests_results module": [[14, "module-CIME.tests.test_sys_bless_tests_results"]], "CIME.tests.test_sys_build_system module": [[14, "module-CIME.tests.test_sys_build_system"]], "CIME.tests.test_sys_cime_case module": [[14, "module-CIME.tests.test_sys_cime_case"]], "CIME.tests.test_sys_cime_performance module": [[14, "module-CIME.tests.test_sys_cime_performance"]], "CIME.tests.test_sys_create_newcase module": [[14, "module-CIME.tests.test_sys_create_newcase"]], "CIME.tests.test_sys_full_system module": [[14, "module-CIME.tests.test_sys_full_system"]], "CIME.tests.test_sys_grid_generation module": [[14, "module-CIME.tests.test_sys_grid_generation"]], "CIME.tests.test_sys_jenkins_generic_job module": [[14, "module-CIME.tests.test_sys_jenkins_generic_job"]], "CIME.tests.test_sys_manage_and_query module": [[14, "module-CIME.tests.test_sys_manage_and_query"]], "CIME.tests.test_sys_query_config module": [[14, "module-CIME.tests.test_sys_query_config"]], "CIME.tests.test_sys_run_restart module": [[14, "module-CIME.tests.test_sys_run_restart"]], "CIME.tests.test_sys_save_timings module": [[14, "module-CIME.tests.test_sys_save_timings"]], "CIME.tests.test_sys_single_submit module": [[14, "module-CIME.tests.test_sys_single_submit"]], "CIME.tests.test_sys_test_scheduler module": [[14, "module-CIME.tests.test_sys_test_scheduler"]], "CIME.tests.test_sys_unittest module": [[14, "module-CIME.tests.test_sys_unittest"]], "CIME.tests.test_sys_user_concurrent_mods module": [[14, "module-CIME.tests.test_sys_user_concurrent_mods"]], "CIME.tests.test_sys_wait_for_tests module": [[14, "module-CIME.tests.test_sys_wait_for_tests"]], "CIME.tests.test_unit_aprun module": [[14, "module-CIME.tests.test_unit_aprun"]], "CIME.tests.test_unit_baselines_performance module": [[14, "module-CIME.tests.test_unit_baselines_performance"]], "CIME.tests.test_unit_bless_test_results module": [[14, "module-CIME.tests.test_unit_bless_test_results"]], "CIME.tests.test_unit_case module": [[14, "module-CIME.tests.test_unit_case"]], "CIME.tests.test_unit_case_fake module": [[14, "module-CIME.tests.test_unit_case_fake"]], "CIME.tests.test_unit_case_run module": [[14, "module-CIME.tests.test_unit_case_run"]], "CIME.tests.test_unit_case_setup module": [[14, "module-CIME.tests.test_unit_case_setup"]], "CIME.tests.test_unit_compare_test_results module": [[14, "module-CIME.tests.test_unit_compare_test_results"]], "CIME.tests.test_unit_compare_two module": [[14, "module-CIME.tests.test_unit_compare_two"]], "CIME.tests.test_unit_config module": [[14, "module-CIME.tests.test_unit_config"]], "CIME.tests.test_unit_cs_status module": [[14, "module-CIME.tests.test_unit_cs_status"]], "CIME.tests.test_unit_custom_assertions_test_status module": [[14, "module-CIME.tests.test_unit_custom_assertions_test_status"]], "CIME.tests.test_unit_doctest module": [[14, "module-CIME.tests.test_unit_doctest"]], "CIME.tests.test_unit_expected_fails_file module": [[14, "module-CIME.tests.test_unit_expected_fails_file"]], "CIME.tests.test_unit_grids module": [[14, "module-CIME.tests.test_unit_grids"]], "CIME.tests.test_unit_hist_utils module": [[14, "module-CIME.tests.test_unit_hist_utils"]], "CIME.tests.test_unit_locked_files module": [[14, "module-CIME.tests.test_unit_locked_files"]], "CIME.tests.test_unit_nmlgen module": [[14, "module-CIME.tests.test_unit_nmlgen"]], "CIME.tests.test_unit_paramgen module": [[14, "module-CIME.tests.test_unit_paramgen"]], "CIME.tests.test_unit_system_tests module": [[14, "module-CIME.tests.test_unit_system_tests"]], "CIME.tests.test_unit_system_tests_mvk module": [[14, "cime-tests-test-unit-system-tests-mvk-module"]], "CIME.tests.test_unit_test_status module": [[14, "module-CIME.tests.test_unit_test_status"]], "CIME.tests.test_unit_two_link_to_case2_output module": [[14, "module-CIME.tests.test_unit_two_link_to_case2_output"]], "CIME.tests.test_unit_user_mod_support module": [[14, 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"compare_namelist": [0, 33], "compare_test_result": [0, 34], "compil": 91, "compon": [6, 69, 79, 85, 86, 92, 94, 97, 103, 106, 109, 111, 112, 113, 114, 115, 116], "component_compare_baselin": 35, "component_compare_copi": 36, "component_compare_test": 37, "component_generate_baselin": 38, "compset": [6, 86, 90], "concat_daily_hist": 39, "concept": 90, "config": [0, 11, 80, 81, 104, 105, 108], "config_batch": 91, "config_compil": 91, "config_head": 105, "config_machin": 91, "config_test": 105, "configur": [1, 83, 85, 89], "consist": 75, "content": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 74, 82], "control": [89, 93, 95, 97, 98], "coupl": [70, 73, 104, 108], "creat": [75, 86, 87, 97], "create_clon": [13, 40], "create_newcas": [13, 41, 87], "create_test": [13, 42, 97], "creation": 99, "cs_statu": 0, "cs_status_cr": 0, "csh": 39, "custom": [79, 81], "custom_assertions_test_statu": 14, "dae": 3, "data": [10, 11, 12, 78, 79, 95, 98, 103, 106, 109, 111, 112, 113, 114, 115, 116], "data_comp": [103, 109, 111, 113, 114, 115, 116], "date": 0, "datm": [79, 103], "defin": [90, 91, 100], "definit": 91, "deprec": 91, "desp": 109, "detail": 100, "develop": [73, 102], "dice": [79, 115], "dictionari": 97, "dir": 87, "direct": 91, "directori": [73, 80, 82, 87], "discov": 90, "distribut": 95, "dlnd": [79, 111], "docn": [79, 113], "document": [74, 100], "doe": 81, "driver": [79, 106, 107], "drof": [79, 114], "dwav": 116, "e3sm": 108, "e3sm_check_env": 44, "ect": 75, "ensembl": 75, "entri": 93, "entry_id": 6, "env_arch": 6, "env_bas": 6, "env_batch": 6, "env_build": 6, "env_cas": 6, "env_mach_p": [6, 93], "env_mach_specif": 6, "env_run": 6, "env_test": 6, "env_workflow": 6, "environ": 90, "er": 3, "eri": 3, "erio": 3, "erp": 3, "err": 3, "erri": 3, "ers2": 3, "ert": 3, "esp": 109, "exampl": [94, 97, 100], "expected_fail": 0, "expected_fails_fil": 6, "extend": 77, "extern": 95, "fail": 95, "file": [6, 73, 75, 79, 83, 87, 91, 97, 100, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116], "find": 100, "fortran": 100, "from": 95, "ftp": 2, "function": 92, "funit": 3, "gener": [73, 100], "generate_cylc_workflow": [5, 16, 45], "generic_serv": 2, "generic_xml": 6, "get_case_env": 47, "get_standard_makefile_arg": 48, "get_test": 0, "get_tim": 0, "gettim": 46, "gftp": 2, "gitinterfac": 0, "glossari": 73, "grid": [6, 88], "group": 97, "guidelin": 100, "header": 6, "hist_util": 0, "homm": 3, "hommebaseclass": 3, "hommebfb": 3, "hook": 81, "how": [81, 100], "hybrid": 79, "i": [100, 102], "ic": [79, 112, 115], "icp": 3, "indic": [70, 74, 76, 89], "initi": 95, "input": [78, 79, 95], "inputdata": 6, "instanc": 92, "introduct": [71, 90, 100], "irt": 3, "jenkins_generic_job": [0, 50], "job": [95, 99], "kei": 90, "land": [79, 111, 112], "layout": [77, 93], "ldsta": 3, "librari": 94, "line": 97, "linux": 94, "list_e3sm_test": 51, "load": [77, 81], "load_balacing_solv": 77, "load_balancing_submit": 77, "lock": 87, "locked_fil": 0, "long": 95, "longnam": [86, 88], "mac": 94, "machin": [6, 91, 100], "main": 83, "manag": 97, "mcc": 3, "mct": 107, "method": [97, 100], "miscellan": [73, 76], "mkdepend": 52, "mksrcfile": 53, "mod": 87, "model": [70, 78, 79, 82, 88, 95, 98, 104, 108], "modifi": 97, "modul": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 74], "monitor": 95, "more": [77, 100], "mosart": 79, "mpi": 94, "multi": [79, 92], "multipl": 97, "mvk": [3, 97], "mvsourc": 54, "namelist": [0, 79], "namelist_definit": 6, "namelist_definition_": 107, "nck": 3, "ncr": 3, "new": [86, 94, 100], "nmlgen": 0, "nodefail": 3, "normalize_cas": 55, "obtain": 75, "ocean": [79, 113], "optim": [77, 93], "option": 91, "order": 100, "other": [95, 97, 100], "output": [95, 97], "overview": [100, 102], "packag": [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 16, 94], "param": 97, "paramet": [6, 7], "path": 91, "pe": [6, 93], "pea": 3, "pelayout": 56, "pem": 3, "perform": [7, 94, 97], "pet": 3, "pf": 3, "pfunit": 100, "pgn": 3, "pio": 6, "platform": 94, "pop2": 79, "port": 94, "post": 95, "pre": [3, 90, 95], "prerequisit": 90, "preview_namelist": [9, 57], "preview_run": 58, "previou": 95, "problem": 99, "process": 95, "processor": 93, "prof": [18, 62], "prognost": 94, "progress": 97, "proven": 0, "py": [18, 45, 62, 64, 77, 97], "python": [74, 97], "qstatu": 24, "query_config": [13, 59, 90], "query_testlist": [13, 60], "quick": 90, "rebuild": [78, 85], "refcas": 95, "refer": 95, "rep": 3, "repositori": 95, "requir": 94, "resourc": 93, "restart": 95, "restart_test": 3, "result": [87, 95], "return": [6, 7], "reuseinitfil": 3, "river": [79, 114], "run": [75, 77, 79, 95, 97, 100], "runoff": 114, "runtim": 99, "satm": 103, "save_proven": 61, "script": [13, 95, 99], "scripts_regression_test": 14, "sea": [79, 115], "search": 74, "seq": 3, "server": 2, "sesp": 109, "set": [79, 86, 91, 93, 96, 98], "setup": [25, 96, 100], "sglc": 112, "shell_command": 97, "short": 95, "sice": 115, "simpl": 62, "simple_compar": [0, 63], "simul": 77, "slnd": 111, "sm": 3, "socn": 113, "sourc": 100, "specif": [79, 86, 91], "src": [103, 107, 109, 111, 112, 113, 114, 115, 116], "srof": 114, "standard_module_setup": 6, "standard_script_setup": [5, 16], "start": [90, 95], "statu": [0, 43], "status": 95, "step": 94, "stop": 95, "stream": [6, 79], "stub": [103, 106, 109, 111, 112, 113, 114, 115, 116], "stub_comp": [103, 109, 111, 112, 113, 114, 115, 116], "submiss": 99, "submit": [26, 95], "submodul": [0, 1, 2, 3, 4, 5, 6, 7, 9, 13, 14, 16], "subpackag": [0, 3, 10], "summari": 75, "support": [94, 100], "svn": 2, "swav": 116, "syntax": 97, "system": [89, 91, 100], "system_tests_common": 3, "system_tests_compare_n": 3, "system_tests_compare_two": 3, "systemtest": [3, 4], "tabl": [70, 74, 76, 89], "teardown": 100, "templat": 12, "term": [90, 95], "test": [6, 14, 73, 75, 77, 97, 100], "test_mod": 3, "test_report": 6, "test_schedul": 0, "test_statu": 0, "test_sys_bless_tests_result": 14, "test_sys_build_system": 14, "test_sys_cime_cas": 14, "test_sys_cime_perform": 14, "test_sys_create_newcas": 14, "test_sys_full_system": 14, "test_sys_grid_gener": 14, "test_sys_jenkins_generic_job": 14, "test_sys_manage_and_queri": 14, "test_sys_query_config": 14, "test_sys_run_restart": 14, "test_sys_save_tim": 14, "test_sys_single_submit": 14, "test_sys_test_schedul": 14, "test_sys_unittest": 14, "test_sys_user_concurrent_mod": 14, "test_sys_wait_for_test": 14, "test_unit_aprun": 14, "test_unit_baselines_perform": 14, "test_unit_bless_test_result": 14, "test_unit_cas": 14, "test_unit_case_fak": 14, "test_unit_case_run": 14, "test_unit_case_setup": 14, "test_unit_compare_test_result": 14, "test_unit_compare_two": 14, "test_unit_config": 14, "test_unit_cs_statu": 14, "test_unit_custom_assertions_test_statu": 14, "test_unit_doctest": 14, "test_unit_expected_fails_fil": 14, "test_unit_grid": 14, "test_unit_hist_util": 14, "test_unit_locked_fil": 14, "test_unit_nmlgen": 14, "test_unit_paramgen": 14, "test_unit_system_test": 14, 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101], "write": 100, "xatm": 103, "xcpl_comp": [103, 111, 112, 113, 114, 115, 116], "xglc": 112, "xice": 115, "xlnd": 111, "xml": [6, 91, 93, 97, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116], "xmlchang": 66, "xmlqueri": 67, "xmltestentri": 68, "xocn": 113, "xrof": 114, "xwav": 116, "year": 79, "your": [79, 87, 90, 98, 100]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"Adding a \u2013user-mods-dir argument to create_newcase": [[87, "adding-a-user-mods-dir-argument-to-create-newcase"]], "Adding components": [[69, null]], "Adding grids": [[88, "adding-grids"]], "Adding to the appropriate cmake file": [[100, "adding-to-the-appropriate-cmake-file"]], "Advice on setting your wallclock time": [[98, "advice-on-setting-your-wallclock-time"]], "An MPI example": [[94, "an-mpi-example"]], "Appendices": [[74, "appendices"]], "Archiving model output data": [[95, "archiving-model-output-data"]], "Assertion methods": [[100, "assertion-methods"]], "Backing up to a previous restart": [[95, "backing-up-to-a-previous-restart"]], "Baselines and Baseline Testing": [[97, "baselines-and-baseline-testing"]], "Batch system definition": [[91, "batch-system-definition"]], "Building a Case": [[78, null]], "Building a Coupled Model with CIME": [[70, null]], "Building pFUnit": [[100, "building-pfunit"]], "CAM": [[79, "cam"]], "CCS and your environment": [[90, "ccs-and-your-environment"]], "CESM Coupled Model XML Files": [[104, null]], "CESM Linux and Mac Support": [[94, "cesm-linux-and-mac-support"]], "CESM-ECT (CESM Ensemble Consistency Test):": [[75, null]], "CICE": [[79, "cice"]], "CIME": [[15, null]], "CIME Atmosphere Data and Stub XML Files": [[103, null]], "CIME ESP Data and Stub XML Files": [[109, null]], "CIME Land Data and Stub XML Files": [[111, null]], "CIME Land Ice Data and Stub XML Files": [[112, null]], "CIME Load Balancing Tool": [[77, null]], "CIME Ocean Data and Stub XML Files": [[113, null]], "CIME River Runoff Data and Stub XML Files": [[114, null]], "CIME Sea Ice Data and Stub XML Files": [[115, null]], "CIME Wave Data and Stub XML Files": [[116, null]], "CIME config": [[81, "cime-config"]], "CIME config and hooks": [[81, null]], "CIME directory content": [[82, "id2"]], "CIME directory in a climate model": [[82, "id1"]], "CIME documentation": [[74, null]], "CIME hooks": [[81, "cime-hooks"]], "CIME package": [[0, null]], "CIME user config directory": [[80, null]], "CIME.BuildTools package": [[1, null]], "CIME.BuildTools.configure module": [[1, "module-CIME.BuildTools.configure"]], "CIME.Servers package": [[2, null]], "CIME.Servers.ftp module": [[2, "module-CIME.Servers.ftp"]], "CIME.Servers.generic_server module": [[2, "module-CIME.Servers.generic_server"]], "CIME.Servers.gftp module": [[2, "module-CIME.Servers.gftp"]], "CIME.Servers.svn module": [[2, "module-CIME.Servers.svn"]], "CIME.Servers.wget module": [[2, "module-CIME.Servers.wget"]], "CIME.SystemTests package": [[3, null]], "CIME.SystemTests.dae module": [[3, "module-CIME.SystemTests.dae"]], "CIME.SystemTests.eri module": [[3, "module-CIME.SystemTests.eri"]], "CIME.SystemTests.erio module": [[3, "module-CIME.SystemTests.erio"]], "CIME.SystemTests.erp module": [[3, "module-CIME.SystemTests.erp"]], "CIME.SystemTests.err module": [[3, "module-CIME.SystemTests.err"]], "CIME.SystemTests.erri module": [[3, "module-CIME.SystemTests.erri"]], "CIME.SystemTests.ers module": [[3, "module-CIME.SystemTests.ers"]], "CIME.SystemTests.ers2 module": [[3, "module-CIME.SystemTests.ers2"]], "CIME.SystemTests.ert module": [[3, "module-CIME.SystemTests.ert"]], "CIME.SystemTests.funit module": [[3, "module-CIME.SystemTests.funit"]], "CIME.SystemTests.homme module": [[3, "module-CIME.SystemTests.homme"]], "CIME.SystemTests.hommebaseclass module": [[3, "module-CIME.SystemTests.hommebaseclass"]], "CIME.SystemTests.hommebfb module": [[3, "module-CIME.SystemTests.hommebfb"]], "CIME.SystemTests.icp module": [[3, "module-CIME.SystemTests.icp"]], "CIME.SystemTests.irt module": [[3, "module-CIME.SystemTests.irt"]], "CIME.SystemTests.ldsta module": [[3, "module-CIME.SystemTests.ldsta"]], "CIME.SystemTests.mcc module": [[3, "module-CIME.SystemTests.mcc"]], "CIME.SystemTests.mvk module": [[3, "module-CIME.SystemTests.mvk"]], "CIME.SystemTests.nck module": [[3, "module-CIME.SystemTests.nck"]], "CIME.SystemTests.ncr module": [[3, "module-CIME.SystemTests.ncr"]], "CIME.SystemTests.nodefail module": [[3, "module-CIME.SystemTests.nodefail"]], "CIME.SystemTests.pea module": [[3, "module-CIME.SystemTests.pea"]], "CIME.SystemTests.pem module": [[3, "module-CIME.SystemTests.pem"]], "CIME.SystemTests.pet module": [[3, "module-CIME.SystemTests.pet"]], "CIME.SystemTests.pfs module": [[3, "module-CIME.SystemTests.pfs"]], "CIME.SystemTests.pgn module": [[3, "cime-systemtests-pgn-module"]], "CIME.SystemTests.pre module": [[3, "module-CIME.SystemTests.pre"]], "CIME.SystemTests.rep module": [[3, "module-CIME.SystemTests.rep"]], "CIME.SystemTests.restart_tests module": [[3, "module-CIME.SystemTests.restart_tests"]], "CIME.SystemTests.reuseinitfiles module": [[3, "module-CIME.SystemTests.reuseinitfiles"]], "CIME.SystemTests.seq module": [[3, "module-CIME.SystemTests.seq"]], "CIME.SystemTests.sms module": [[3, "module-CIME.SystemTests.sms"]], "CIME.SystemTests.system_tests_common module": [[3, "module-CIME.SystemTests.system_tests_common"]], "CIME.SystemTests.system_tests_compare_n module": [[3, "module-CIME.SystemTests.system_tests_compare_n"]], "CIME.SystemTests.system_tests_compare_two module": [[3, "module-CIME.SystemTests.system_tests_compare_two"]], "CIME.SystemTests.test_mods module": [[3, "module-CIME.SystemTests.test_mods"]], "CIME.SystemTests.test_utils package": [[4, null]], "CIME.SystemTests.test_utils.user_nl_utils module": [[4, "module-CIME.SystemTests.test_utils.user_nl_utils"]], "CIME.SystemTests.tsc module": [[3, "module-CIME.SystemTests.tsc"]], "CIME.Tools package": [[5, null]], "CIME.Tools.generate_cylc_workflow module": [[5, "module-CIME.Tools.generate_cylc_workflow"]], "CIME.Tools.standard_script_setup module": [[5, "module-CIME.Tools.standard_script_setup"]], "CIME.Tools.testreporter module": [[5, "module-CIME.Tools.testreporter"]], "CIME.XML package": [[6, null]], "CIME.XML.archive module": [[6, "module-CIME.XML.archive"]], "CIME.XML.archive_base module": [[6, "module-CIME.XML.archive_base"]], "CIME.XML.batch module": [[6, "module-CIME.XML.batch"]], "CIME.XML.component module": [[6, "module-CIME.XML.component"]], "CIME.XML.compsets module": [[6, "module-CIME.XML.compsets"]], "CIME.XML.entry_id module": [[6, "module-CIME.XML.entry_id"]], "CIME.XML.env_archive module": [[6, "module-CIME.XML.env_archive"]], "CIME.XML.env_base module": [[6, "module-CIME.XML.env_base"]], "CIME.XML.env_batch module": [[6, "module-CIME.XML.env_batch"]], "CIME.XML.env_build module": [[6, "module-CIME.XML.env_build"]], "CIME.XML.env_case module": [[6, "module-CIME.XML.env_case"]], "CIME.XML.env_mach_pes module": [[6, "module-CIME.XML.env_mach_pes"]], "CIME.XML.env_mach_specific module": [[6, "module-CIME.XML.env_mach_specific"]], "CIME.XML.env_run module": [[6, "module-CIME.XML.env_run"]], "CIME.XML.env_test module": [[6, "module-CIME.XML.env_test"]], "CIME.XML.env_workflow module": [[6, "module-CIME.XML.env_workflow"]], "CIME.XML.expected_fails_file module": [[6, "module-CIME.XML.expected_fails_file"]], "CIME.XML.files module": [[6, "module-CIME.XML.files"]], "CIME.XML.generic_xml module": [[6, "module-CIME.XML.generic_xml"]], "CIME.XML.grids module": [[6, "module-CIME.XML.grids"]], "CIME.XML.headers module": [[6, "module-CIME.XML.headers"]], "CIME.XML.inputdata module": [[6, "module-CIME.XML.inputdata"]], "CIME.XML.machines module": [[6, "module-CIME.XML.machines"]], "CIME.XML.namelist_definition module": [[6, "module-CIME.XML.namelist_definition"]], "CIME.XML.pes module": [[6, "module-CIME.XML.pes"]], "CIME.XML.pio module": [[6, "module-CIME.XML.pio"]], "CIME.XML.standard_module_setup module": [[6, "module-CIME.XML.standard_module_setup"]], "CIME.XML.stream module": [[6, "module-CIME.XML.stream"]], "CIME.XML.test_reporter module": [[6, "module-CIME.XML.test_reporter"]], "CIME.XML.testlist module": [[6, "module-CIME.XML.testlist"]], "CIME.XML.tests module": [[6, "module-CIME.XML.tests"]], "CIME.XML.testspec module": [[6, "module-CIME.XML.testspec"]], "CIME.XML.workflow module": [[6, "module-CIME.XML.workflow"]], "CIME.aprun module": [[0, "module-CIME.aprun"]], "CIME.baselines package": [[7, null]], "CIME.baselines.performance module": [[7, "module-CIME.baselines.performance"]], "CIME.bless_test_results module": [[0, "module-CIME.bless_test_results"]], "CIME.build module": [[0, "module-CIME.build"]], "CIME.build_scripts package": [[8, null]], "CIME.buildlib module": [[0, "module-CIME.buildlib"]], "CIME.buildnml module": [[0, "module-CIME.buildnml"]], "CIME.case package": [[9, null]], "CIME.case.case module": [[9, "module-CIME.case.case"]], "CIME.case.case_clone module": [[9, "module-CIME.case.case_clone"]], "CIME.case.case_cmpgen_namelists module": [[9, "module-CIME.case.case_cmpgen_namelists"]], "CIME.case.case_run module": [[9, "module-CIME.case.case_run"]], "CIME.case.case_setup module": [[9, "module-CIME.case.case_setup"]], "CIME.case.case_st_archive module": [[9, "module-CIME.case.case_st_archive"]], "CIME.case.case_submit module": [[9, "module-CIME.case.case_submit"]], "CIME.case.case_test module": [[9, "module-CIME.case.case_test"]], "CIME.case.check_input_data module": [[9, "module-CIME.case.check_input_data"]], "CIME.case.preview_namelists module": [[9, "module-CIME.case.preview_namelists"]], "CIME.code_checker module": [[0, "module-CIME.code_checker"]], "CIME.compare_namelists module": [[0, "module-CIME.compare_namelists"]], "CIME.compare_test_results module": [[0, "module-CIME.compare_test_results"]], "CIME.config module": [[0, "module-CIME.config"]], "CIME.cs_status module": [[0, 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"CIME.scripts.create_newcase module": [[13, "module-CIME.scripts.create_newcase"]], "CIME.scripts.create_test module": [[13, "module-CIME.scripts.create_test"]], "CIME.scripts.query_config module": [[13, "module-CIME.scripts.query_config"]], "CIME.scripts.query_testlists module": [[13, "module-CIME.scripts.query_testlists"]], "CIME.simple_compare module": [[0, "module-CIME.simple_compare"]], "CIME.status module": [[0, "module-CIME.status"]], "CIME.test_scheduler module": [[0, "module-CIME.test_scheduler"]], "CIME.test_status module": [[0, "module-CIME.test_status"]], "CIME.test_utils module": [[0, "module-CIME.test_utils"]], "CIME.tests package": [[14, null]], "CIME.tests.base module": [[14, "module-CIME.tests.base"]], "CIME.tests.case_fake module": [[14, "module-CIME.tests.case_fake"]], "CIME.tests.custom_assertions_test_status module": [[14, "module-CIME.tests.custom_assertions_test_status"]], "CIME.tests.scripts_regression_tests module": [[14, "module-CIME.tests.scripts_regression_tests"]], "CIME.tests.test_sys_bless_tests_results module": [[14, "module-CIME.tests.test_sys_bless_tests_results"]], "CIME.tests.test_sys_build_system module": [[14, "module-CIME.tests.test_sys_build_system"]], "CIME.tests.test_sys_cime_case module": [[14, "module-CIME.tests.test_sys_cime_case"]], "CIME.tests.test_sys_cime_performance module": [[14, "module-CIME.tests.test_sys_cime_performance"]], "CIME.tests.test_sys_create_newcase module": [[14, "module-CIME.tests.test_sys_create_newcase"]], "CIME.tests.test_sys_full_system module": [[14, "module-CIME.tests.test_sys_full_system"]], "CIME.tests.test_sys_grid_generation module": [[14, "module-CIME.tests.test_sys_grid_generation"]], "CIME.tests.test_sys_jenkins_generic_job module": [[14, "module-CIME.tests.test_sys_jenkins_generic_job"]], "CIME.tests.test_sys_manage_and_query module": [[14, "module-CIME.tests.test_sys_manage_and_query"]], "CIME.tests.test_sys_query_config module": [[14, "module-CIME.tests.test_sys_query_config"]], "CIME.tests.test_sys_run_restart module": [[14, "module-CIME.tests.test_sys_run_restart"]], "CIME.tests.test_sys_save_timings module": [[14, "module-CIME.tests.test_sys_save_timings"]], "CIME.tests.test_sys_single_submit module": [[14, "module-CIME.tests.test_sys_single_submit"]], "CIME.tests.test_sys_test_scheduler module": [[14, "module-CIME.tests.test_sys_test_scheduler"]], "CIME.tests.test_sys_unittest module": [[14, "module-CIME.tests.test_sys_unittest"]], "CIME.tests.test_sys_user_concurrent_mods module": [[14, "module-CIME.tests.test_sys_user_concurrent_mods"]], "CIME.tests.test_sys_wait_for_tests module": [[14, "module-CIME.tests.test_sys_wait_for_tests"]], "CIME.tests.test_unit_aprun module": [[14, "module-CIME.tests.test_unit_aprun"]], "CIME.tests.test_unit_baselines_performance module": [[14, "module-CIME.tests.test_unit_baselines_performance"]], "CIME.tests.test_unit_bless_test_results module": [[14, "module-CIME.tests.test_unit_bless_test_results"]], "CIME.tests.test_unit_case module": [[14, "module-CIME.tests.test_unit_case"]], "CIME.tests.test_unit_case_fake module": [[14, "module-CIME.tests.test_unit_case_fake"]], "CIME.tests.test_unit_case_run module": [[14, "module-CIME.tests.test_unit_case_run"]], "CIME.tests.test_unit_case_setup module": [[14, "module-CIME.tests.test_unit_case_setup"]], "CIME.tests.test_unit_compare_test_results module": [[14, "module-CIME.tests.test_unit_compare_test_results"]], "CIME.tests.test_unit_compare_two module": [[14, "module-CIME.tests.test_unit_compare_two"]], "CIME.tests.test_unit_config module": [[14, "module-CIME.tests.test_unit_config"]], "CIME.tests.test_unit_cs_status module": [[14, "module-CIME.tests.test_unit_cs_status"]], "CIME.tests.test_unit_custom_assertions_test_status module": [[14, "module-CIME.tests.test_unit_custom_assertions_test_status"]], "CIME.tests.test_unit_doctest module": [[14, "module-CIME.tests.test_unit_doctest"]], "CIME.tests.test_unit_expected_fails_file module": [[14, "module-CIME.tests.test_unit_expected_fails_file"]], "CIME.tests.test_unit_grids module": [[14, "module-CIME.tests.test_unit_grids"]], "CIME.tests.test_unit_hist_utils module": [[14, "module-CIME.tests.test_unit_hist_utils"]], "CIME.tests.test_unit_locked_files module": [[14, "module-CIME.tests.test_unit_locked_files"]], "CIME.tests.test_unit_nmlgen module": [[14, "module-CIME.tests.test_unit_nmlgen"]], "CIME.tests.test_unit_paramgen module": [[14, "module-CIME.tests.test_unit_paramgen"]], "CIME.tests.test_unit_system_tests module": [[14, "module-CIME.tests.test_unit_system_tests"]], "CIME.tests.test_unit_system_tests_mvk module": [[14, "module-CIME.tests.test_unit_system_tests_mvk"]], "CIME.tests.test_unit_test_status module": [[14, "module-CIME.tests.test_unit_test_status"]], "CIME.tests.test_unit_two_link_to_case2_output module": [[14, "module-CIME.tests.test_unit_two_link_to_case2_output"]], "CIME.tests.test_unit_user_mod_support module": [[14, "module-CIME.tests.test_unit_user_mod_support"]], "CIME.tests.test_unit_user_nl_utils module": [[14, "module-CIME.tests.test_unit_user_nl_utils"]], "CIME.tests.test_unit_utils module": [[14, "module-CIME.tests.test_unit_utils"]], "CIME.tests.test_unit_xml_archive_base module": [[14, "module-CIME.tests.test_unit_xml_archive_base"]], "CIME.tests.test_unit_xml_env_batch module": [[14, "module-CIME.tests.test_unit_xml_env_batch"]], "CIME.tests.test_unit_xml_env_mach_specific module": [[14, "module-CIME.tests.test_unit_xml_env_mach_specific"]], "CIME.tests.test_unit_xml_grids module": [[14, "module-CIME.tests.test_unit_xml_grids"]], "CIME.tests.test_unit_xml_machines module": [[14, "module-CIME.tests.test_unit_xml_machines"]], "CIME.tests.test_unit_xml_namelist_definition module": [[14, "module-CIME.tests.test_unit_xml_namelist_definition"]], "CIME.tests.test_unit_xml_tests module": [[14, "module-CIME.tests.test_unit_xml_tests"]], "CIME.tests.utils module": [[14, "module-CIME.tests.utils"]], "CIME.user_mod_support module": [[0, "module-CIME.user_mod_support"]], "CIME.utils module": [[0, "module-CIME.utils"]], "CIME.wait_for_tests module": [[0, "module-CIME.wait_for_tests"]], "CIMEROOT/config/cesm": [[104, "cimeroot-config-cesm"]], "CIMEROOT/config/config_headers.xml": [[105, "cimeroot-config-config-headers-xml"]], "CIMEROOT/config/config_tests.xml": [[105, "cimeroot-config-config-tests-xml"]], "CIMEROOT/config/e3sm": [[108, "cimeroot-config-e3sm"]], "CIMEROOT/src/components/data_comps/datm/cime_config": [[103, "cimeroot-src-components-data-comps-datm-cime-config"]], "CIMEROOT/src/components/data_comps/desp/cime_config": [[109, "cimeroot-src-components-data-comps-desp-cime-config"]], "CIMEROOT/src/components/data_comps/dice/cime_config": [[115, "cimeroot-src-components-data-comps-dice-cime-config"]], "CIMEROOT/src/components/data_comps/dlnd/cime_config": [[111, "cimeroot-src-components-data-comps-dlnd-cime-config"]], "CIMEROOT/src/components/data_comps/docn/cime_config": [[113, "cimeroot-src-components-data-comps-docn-cime-config"]], "CIMEROOT/src/components/data_comps/drof/cime_config": [[114, "cimeroot-src-components-data-comps-drof-cime-config"]], "CIMEROOT/src/components/data_comps/dwav/cime_config": [[116, "cimeroot-src-components-data-comps-dwav-cime-config"]], "CIMEROOT/src/components/stub_comps/satm/cime_config": [[103, "cimeroot-src-components-stub-comps-satm-cime-config"]], "CIMEROOT/src/components/stub_comps/sesp/cime_config": [[109, "cimeroot-src-components-stub-comps-sesp-cime-config"]], "CIMEROOT/src/components/stub_comps/sglc/cime_config": [[112, "cimeroot-src-components-stub-comps-sglc-cime-config"]], "CIMEROOT/src/components/stub_comps/sice/cime_config": [[115, "cimeroot-src-components-stub-comps-sice-cime-config"]], "CIMEROOT/src/components/stub_comps/slnd/cime_config": [[111, "cimeroot-src-components-stub-comps-slnd-cime-config"]], "CIMEROOT/src/components/stub_comps/socn/cime_config": [[113, "cimeroot-src-components-stub-comps-socn-cime-config"]], "CIMEROOT/src/components/stub_comps/srof/cime_config": [[114, "cimeroot-src-components-stub-comps-srof-cime-config"]], "CIMEROOT/src/components/stub_comps/swav/cime_config": [[116, "cimeroot-src-components-stub-comps-swav-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xatm/cime_config": [[103, "cimeroot-src-components-xcpl-comps-xatm-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xglc/cime_config": [[112, "cimeroot-src-components-xcpl-comps-xglc-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xice/cime_config": [[115, "cimeroot-src-components-xcpl-comps-xice-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xlnd/cime_config": [[111, "cimeroot-src-components-xcpl-comps-xlnd-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xocn/cime_config": [[113, "cimeroot-src-components-xcpl-comps-xocn-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xrof/cime_config": [[114, "cimeroot-src-components-xcpl-comps-xrof-cime-config"]], "CIMEROOT/src/components/xcpl_comps/xwav/cime_config": [[116, "cimeroot-src-components-xcpl-comps-xwav-cime-config"]], "CIMEROOT/src/drivers/mct/cime_config": [[107, "cimeroot-src-drivers-mct-cime-config"]], "CIMEROOT/src/drivers/mct/cime_config/namelist_definition_*.xml": [[107, "cimeroot-src-drivers-mct-cime-config-namelist-definition-xml"]], "CISM": [[79, "cism"]], "CLM": [[79, "clm"]], "Calling case.build": [[78, "calling-case-build"]], "Calling case.setup": [[96, "calling-case-setup"]], "Calling case.submit": [[95, "calling-case-submit"]], "Calling create_newcase": [[87, "calling-create-newcase"]], "Case Resource Allocation": [[93, "case-resource-allocation"]], "Cloning a Case": [[84, null]], "Common XML Files": [[105, null]], "Comparing a baseline": [[97, "comparing-a-baseline"]], "Compiler settings": [[91, "compiler-settings"]], "Component sets": [[86, null]], "Component specific settings in a compset": [[86, "component-specific-settings-in-a-compset"]], "Components": [[85, null]], "Compset longname": [[86, "compset-longname"]], "Configuration": [[85, "configuration"]], "Configuring the Case Control System": [[89, "configuring-the-case-control-system"]], "Controlling output data": [[95, "controlling-output-data"]], "Controlling processors and threads": [[93, null]], "Controlling timers": [[98, "controlling-timers"]], "Coupling": [[73, "coupling"]], "Create_test output": [[97, "create-test-output"]], "Creating New Compsets": [[86, "creating-new-compsets"]], "Creating a Case": [[87, null]], "Creating a baseline": [[97, "creating-a-baseline"]], "Creating or obtaining a summary file:": [[75, "creating-or-obtaining-a-summary-file"]], "Creating test runs:": [[75, "creating-test-runs"]], "Customizing CESM active component-specific namelist settings": [[79, "customizing-cesm-active-component-specific-namelist-settings"]], "Customizing data model input variable and stream files": [[79, "customizing-data-model-input-variable-and-stream-files"]], "Customizing driver input variables": [[79, "customizing-driver-input-variables"]], "Customizing your input variables": [[79, null]], "Data Assimilation and other External Processing": [[95, "data-assimilation-and-other-external-processing"]], "Data Assimilation scripts": [[95, "data-assimilation-scripts"]], "Data Atmosphere (DATM)": [[79, "data-atmosphere-datm"]], "Data Land (DLND)": [[79, "data-land-dlnd"]], "Data Ocean (DOCN)": [[79, "data-ocean-docn"]], "Data River (DROF)": [[79, "data-river-drof"]], "Data Sea-ice (DICE)": [[79, "data-sea-ice-dice"]], "Data, Stub and Driver Component XML Files": [[106, null]], "Defining a test class in order to define setUp and tearDown methods": [[100, "defining-a-test-class-in-order-to-define-setup-and-teardown-methods"]], "Defining the machine": [[91, null]], "Development": [[73, "development"], [102, "development"]], "Directory content": [[82, null]], "Discovering available pre-defined compsets with query_config": [[90, "discovering-available-pre-defined-compsets-with-query-config"]], "Distributed Input Data Repositories": [[95, "distributed-input-data-repositories"]], "Documentation of the unit test build system": [[100, "documentation-of-the-unit-test-build-system"]], "Driver XML Files": [[107, null]], "E3SM Coupled Model XML Files": [[108, null]], "Entries in env_mach_pes.xml": [[93, "id3"]], "Example params.py": [[97, "example-params-py"]], "Example shell_commands": [[97, "example-shell-commands"]], "Example user_mods": [[97, "example-user-mods"]], "Example user_nl_": [[97, "example-user-nl-component"]], "Examples": [[97, "examples"]], "Extending the Load Balancing Tool": [[77, "extending-the-load-balancing-tool"]], "Files and Directories": [[73, "files-and-directories"]], "Finding more documentation and examples": [[100, "finding-more-documentation-and-examples"]], "Fortran Unit Testing": [[100, null]], "GROUP-TESTMODS": [[97, "group-testmods"]], "General": [[73, "general"]], "General guidelines for writing unit tests": [[100, "general-guidelines-for-writing-unit-tests"]], "Glossary": [[73, null]], "Grid longname": [[88, "grid-longname"]], "How does CIME load customizations?": [[81, "how-does-cime-load-customizations"]], "How to add unit testing support on your machine": [[100, "how-to-add-unit-testing-support-on-your-machine"]], "How to write a new unit test": [[100, "how-to-write-a-new-unit-test"]], "Indices and tables": [[70, "indices-and-tables"], [76, "indices-and-tables"], [89, "indices-and-tables"]], "Input data": [[78, "input-data"], [95, "input-data"]], "Introduction": [[71, null], [90, null], [100, "introduction"]], "Key Terms and concepts": [[90, "key-terms-and-concepts"]], "Locked files in your case directory": [[87, "locked-files-in-your-case-directory"]], "Long-term archiving": [[95, "long-term-archiving"]], "MODIFIERS": [[97, "modifiers"]], "MOSART": [[79, "mosart"]], "MVK": [[97, "mvk"]], "Main Configuration File": [[83, null]], "Managing baselines": [[97, "managing-baselines"]], "Methods": [[97, "methods"]], "Miscellaneous": [[73, "miscellaneous"]], "Miscellaneous Tools": [[76, null]], "Model grids": [[88, null]], "Model timing data": [[98, "model-timing-data"]], "Module contents": [[0, "module-CIME"], [1, "module-CIME.BuildTools"], [2, "module-CIME.Servers"], [3, "module-CIME.SystemTests"], [4, "module-CIME.SystemTests.test_utils"], [5, "module-CIME.Tools"], [6, "module-CIME.XML"], [7, "module-CIME.baselines"], [8, "module-CIME.build_scripts"], [9, "module-CIME.case"], [10, "module-CIME.data"], [11, "module-CIME.data.config"], [12, "module-CIME.data.templates"], [13, "module-CIME.scripts"], [14, "module-CIME.tests"], [16, "module-Tools"]], "Monitoring case job statuses": [[95, "monitoring-case-job-statuses"]], "More about the algorithm": [[77, "more-about-the-algorithm"]], "More detailed examples in CIME": [[100, "more-detailed-examples-in-cime"]], "More details on writing pFUnit-based unit tests": [[100, "more-details-on-writing-pfunit-based-unit-tests"]], "More on test teardown": [[100, "more-on-test-teardown"]], "Multi-instance component functionality": [[92, null]], "No archiving": [[95, "no-archiving"]], "Optimizing processor layout": [[93, "optimizing-processor-layout"]], "Optimizing the layout using load_balacing_solve.py": [[77, "optimizing-the-layout-using-load-balacing-solve-py"]], "Other pFUnit documentation sources": [[100, "other-pfunit-documentation-sources"]], "Overview": [[102, "overview"]], "Overview of unit test support in CIME": [[100, "overview-of-unit-test-support-in-cime"]], "POP2": [[79, "pop2"]], "Parameters": [[6, "parameters"], [7, "parameters"], [7, "id1"], [7, "id3"], [7, "id5"], [7, "id7"], [7, "id9"], [7, "id11"], [7, "id13"], [7, "id14"], [7, "id16"]], "Performance baselines": [[97, "performance-baselines"]], "Performance tuning of a CESM port": [[94, "performance-tuning-of-a-cesm-port"]], "Porting and validating CIME on a new platform": [[94, null]], "Pre and Post run scripts": [[95, "pre-and-post-run-scripts"]], "Prerequisites": [[90, "prerequisites"]], "Python Module Indices and Search": [[74, "python-module-indices-and-search"]], "Quick start": [[90, "quick-start"]], "Rebuilding the model": [[78, "rebuilding-the-model"]], "Required libraries/packages": [[94, "required-libraries-packages"]], "Restarting a run": [[95, "restarting-a-run"]], "Result of running case.submit": [[95, "result-of-running-case-submit"]], "Results of calling create_newcase": [[87, "results-of-calling-create-newcase"]], "Returns": [[6, "returns"], [7, "returns"], [7, "id2"], [7, "id4"], [7, "id6"], [7, "id8"], [7, "id10"], [7, "id12"], [7, "id15"]], "Run-type initialization": [[95, "run-type-initialization"]], "Running CIME\u2019s Fortran unit tests": [[100, 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