How to run all models at once?

[rullator]

Hi all,

as stated MOOSE can simply be started by typing:
moosez -d <path_to_image_dir> -m clin_ct_organs

Im comparison to the earlier version, seperated models exist. But how can I start MOOSE aiming to run all models at once?
I already tried:
moosez -d <path_to_image_dir> -m clin_ct_organs -m clin_ct_cardiac
-> It uses only the last given model.

moosez -d <path_to_image_dir> -m clin_ct_organs clin_ct_cardiac
-> Returns an error: moosez: error: unrecognized arguments: clin_ct_cardiac

Running sequentially
moosez -d <path_to_image_dir> -m clin_ct_organs
moosez -d <path_to_image_dir> -m clin_ct_cardiac
-> Runs into error since it creates a folder within each subject (moosez-clin_*) and MOOSE cannot handle the created folder in the second run (IsADirectoryError: [Errno 21] Is a directory: 'SUBJECT/moosez-clin_ct_organs-2023-10-16-12-14-09/CT').

Can someone possibly help?

PS: Wasn't sure whether this question belongs to "Issues" or whether I'm just on the wrong way and missed something..

[LalithShiyam]

Hi @rullator, many thanks for asking this question! I think this is a feature request, you are right, you need to clean up the generated moosez folder before running the next model. I realize that it can be annoying. I think I can make a quick patch to ignore these moosez generated folders. And you can run it one by one (sequentially).

E.g: moosez -d path_to_dir -m your_model_1
And
moosez -d path_to_dir -m your_model_2

Would that be a reasonable fix for you?

[rullator]

That would help a lot :)
Thanks!

[LalithShiyam]

Hi @rullator: Fixed this in the latest commit!

[LalithShiyam]

@rullator : moosez 2.2.36 is your friend! A patch was included to ignore the previously generated moosez folder. Let me know if it works.

pip install --upgrade moosez