Clin_CT_PUMA

[pdecazes]

Hello,

Congratulations for your project.

I would like to use clin_ct_PUMA but have some problems. First of all, the automatic import and installation of the models doesn't work (file incompletely downloaded), so I have to import it manually.

So I first used the link found in the source code
"url": "https://ucd-emic-muv.s3.us-west-2.amazonaws.com/moose/clin_ct_puma_04042024.zip",

But I got an error during the use
[1/1] Running prediction for S01 using clin_ct_PUMA...Traceback (most recent call last):
File "/home/piedec/miniconda3/envs/moose-env/bin/moosez", line 8, in
sys.exit(main())
File "/home/piedec/miniconda3/envs/moose-env/lib/python3.9/site-packages/moosez/moosez.py", line 198, in main
predict.predict(model_name, input_dir, output_dir, accelerator)
File "/home/piedec/miniconda3/envs/moose-env/lib/python3.9/site-packages/moosez/predict.py", line 78, in predict
postprocess(original_image_files[0], output_dir, model_name)
File "/home/piedec/miniconda3/envs/moose-env/lib/python3.9/site-packages/moosez/predict.py", line 131, in postprocess
predicted_image = file_utilities.get_files(output_dir, '.nii.gz')[0]
IndexError: list index out of range

Using the previous file on this link the model works
"url": "https://ucd-emic-muv.s3.us-west-2.amazonaws.com/moose/clin_ct_PUMA_06112023.zip"

Best regards

[LalithShiyam]

Hi @pdecazes, thank you for the message. This might be on me. I didn't do a proper release with the updated links. We are facing issues in hosting the model as we are migrating to a new vendor. So it is going to be turbulent for sometime. I am really sorry about that. I made the latest build, kindly check moosez==2.4.5 in a new environment, with the new clin_ct_PUMA.

Also please use python3.10!

[mprires]

Hi @pdecazes I just tested the PUMA model on python3.10 and everything was working as intended. Please let us know if it fixes the problem for you too!

[pdecazes]

Effectively, it's OK with python3.10 (both download and running clin_ct_PUMA). Many thanks.

[LalithShiyam]

You are welcome - let us know if you have further issues, closing this for now.